Rmu_sc0002584.1_g000002

Belongs to the pyruvate kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002584.1
OG0011610
Physical Location & Seq
Reverse (-)
3617 .. 4158
542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002584.1_g000002.1.cds

Sequence Viewer

Length: 414 bp
atgcactatttccactcaaaggaaaatggggctgaaggtgttgatttcattgctgtatcttttgtcaagtctgctgaagtgatcaatcaccttaaaagctatattgcagcacggtctcgcgatatttctgttgtggcaaagatagagagtattgactctctaaagaacttggaagagatcatccttgcatcagatggagcaatggtagcaagaggtgacctaggtgctcagataccattggaacaggtcccatcagcccagcaaaagattgttcaagtatgtcggcagctaaataagccagtcattgttgcttctcaactactcgaatctatgatcgagtatcctacacccactagagctgaagtggctgatgtttctgaagtcgtgaggcagcgagctgatgctttctggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006629 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0010431 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0021700 GO:0022414 GO:0030955 GO:0031420 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046872 GO:0046939 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230
Pfam Domains
Protein Families
PK PK_C

Protein Analysis

137

Amino Acids

15.09

Weight (kDa)

5.35

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Tree File
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 120
AcuI CTGAAG 4 cut(s) 54, 96, 381, 399
AfiI CCNNNNNNNGG 1 cut(s) 19
AgsI TTSAA 1 cut(s) 275
AluBI AGCT 4 cut(s) 99, 289, 359, 398
AluI AGCT 4 cut(s) 99, 289, 359, 398
Alw21I GWGCWC 1 cut(s) 229
Alw26I GTCTC 1 cut(s) 120
ApeKI GCWGC 3 cut(s) 107, 286, 391
AspA2I CCTAGG 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 2 cut(s) 80, 227
AvaII GGWCC 1 cut(s) 247
AvrII CCTAGG 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 229
BbvI GCAGC 3 cut(s) 119, 298, 403
BccI CCATC 2 cut(s) 188, 259
BciVI GTATCC 1 cut(s) 351
BclI TGATCA 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 2 cut(s) 221, 354
BfuI GTATCC 1 cut(s) 351
BisI GCNGC 3 cut(s) 108, 287, 392
BlnI CCTAGG 1 cut(s) 220
BlsI GCNGC 3 cut(s) 109, 288, 393
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 249
BmsI GCATC 2 cut(s) 197, 391
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 220
BsaXI ACNNNNNCTCC 2 cut(s) 189, 219
Bsc4I CCNNNNNNNGG 1 cut(s) 19
Bse1I ACTGG 1 cut(s) 299
Bse3DI GCAATG 2 cut(s) 48, 207
BseDI CCNNGG 1 cut(s) 220
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 19
BseMI GCAATG 2 cut(s) 48, 207
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 299
BseXI GCAGC 3 cut(s) 119, 298, 403
BseYI CCCAGC 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 229
BslFI GGGAC 1 cut(s) 233
BslI CCNNNNNNNGG 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 233
Bso31I GGTCTC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 229
Bsp143I GATC 3 cut(s) 81, 177, 333
Bsp68I TCGCGA 1 cut(s) 120
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 249
BspTNI GGTCTC 1 cut(s) 120
BsrDI GCAATG 2 cut(s) 48, 207
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 220
BssMI GATC 3 cut(s) 81, 177, 333
BssT1I CCWWGG 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 114
Bst6I CTCTTC 1 cut(s) 168
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 1 cut(s) 228
BstEII GGTNACC 1 cut(s) 215
BstF5I GGATG 1 cut(s) 180
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 3 cut(s) 84, 180, 336
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 3 cut(s) 81, 177, 333
BstMWI GCNNNNNNNGC 3 cut(s) 206, 295, 365
BstPI GGTNACC 1 cut(s) 215
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 3 cut(s) 119, 298, 403
BsuI GTATCC 1 cut(s) 351
BtsCI GGATG 1 cut(s) 180
BtuMI TCGCGA 1 cut(s) 120
Cac8I GCNNGC 1 cut(s) 396
Cfr13I GGNCC 1 cut(s) 247
CviJI RGCY 8 cut(s) 32, 99, 257, 289, 298, 359, 368, 398
CviKI_1 RGCY 8 cut(s) 32, 99, 257, 289, 298, 359, 368, 398
DdeI CTNAG 1 cut(s) 228
DpnI GATC 3 cut(s) 83, 179, 335
DpnII GATC 3 cut(s) 81, 177, 333
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco130I CCWWGG 1 cut(s) 220
Eco31I GGTCTC 1 cut(s) 120
Eco47I GGWCC 1 cut(s) 247
Eco57I CTGAAG 4 cut(s) 54, 96, 381, 399
Eco91I GGTNACC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 247
EcoO65I GGTNACC 1 cut(s) 215
EcoT14I CCWWGG 1 cut(s) 220
ErhI CCWWGG 1 cut(s) 220
FaiI YATR 3 cut(s) 102, 280, 332
FaqI GGGAC 1 cut(s) 233
FbaI TGATCA 1 cut(s) 81
Fnu4HI GCNGC 3 cut(s) 108, 287, 392
FokI GGATG 1 cut(s) 167
Fsp4HI GCNGC 3 cut(s) 108, 287, 392
FspBI CTAG 2 cut(s) 221, 354
GluI GCNGC 3 cut(s) 108, 287, 392
GsaI CCCAGC 1 cut(s) 262
HinfI GANTC 2 cut(s) 155, 326
HphI GGTGA 2 cut(s) 80, 227
Hpy188I TCNGA 3 cut(s) 193, 231, 379
Hpy188III TCNNGA 2 cut(s) 119, 385
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 114
HpyCH4V TGCA 3 cut(s) 4, 107, 188
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 295, 365
HpyF3I CTNAG 1 cut(s) 228
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 3 cut(s) 81, 177, 333
LmnI GCTCC 1 cut(s) 197
LpnPI CCDG 4 cut(s) 230, 272, 312, 394
Lsp1109I GCAGC 3 cut(s) 119, 298, 403
LweI GCATC 2 cut(s) 197, 391
MaeI CTAG 2 cut(s) 221, 354
MaeIII GTNAC 1 cut(s) 215
MalI GATC 3 cut(s) 83, 179, 335
MboI GATC 3 cut(s) 81, 177, 333
MboII GAAGA 1 cut(s) 185
MhlI GDGCHC 1 cut(s) 229
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 2 cut(s) 206, 381
MseI TTAA 1 cut(s) 93
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 3 cut(s) 206, 295, 365
NdeII GATC 3 cut(s) 81, 177, 333
NlaIV GGNNCC 1 cut(s) 249
NmuCI GTSAC 1 cut(s) 215
NruI TCGCGA 1 cut(s) 120
PfeI GAWTC 1 cut(s) 326
PkrI GCNGC 3 cut(s) 109, 288, 393
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
PpuMI RGGWCCY 1 cut(s) 247
Psp5II RGGWCCY 1 cut(s) 247
PspEI GGTNACC 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 258
PspN4I GGNNCC 1 cut(s) 249
PspPI GGNCC 1 cut(s) 247
PspPPI RGGWCCY 1 cut(s) 247
RruI TCGCGA 1 cut(s) 120
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 3 cut(s) 108, 287, 392
Sau3AI GATC 3 cut(s) 81, 177, 333
Sau96I GGNCC 1 cut(s) 247
SchI GAGTC 1 cut(s) 149
SduI GDGCHC 1 cut(s) 229
SfaNI GCATC 2 cut(s) 197, 391
SinI GGWCC 1 cut(s) 247
SspMI CTAG 2 cut(s) 221, 354
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 324, 336
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 3 cut(s) 107, 286, 391
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 1 cut(s) 37
VpaK11BI GGWCC 1 cut(s) 247
XmaJI CCTAGG 1 cut(s) 220
XspI CTAG 2 cut(s) 221, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.