Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011777.1

Orthogroup ID

OG0011610

Physical Location & Seq

Genomic Coordinates Reverse (-)

38976 .. 39317

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011777.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

atggtaaatttgtatctcatgagatttctttcatcatgttggtgcatcgatatttctgttgtggcaaagatagagagtattgactctctaaagaacttggaagagatcatccttgcatcagatggagcaatggtagcaagaggtgacctaggtgctcagataccattggaacaggtcccatcagcccagcaaaagattgttcaagtatgtcggcagctaaataagccagtcattgttgcttctcaactactcgaatctatgatcgagtatcctacacccactagagctgaagtggctgatgtttctgaagtcgtgaggcagcgagctgatgctttctggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000287 GO:0003006 GO:0003674 GO:0003824 GO:0004743 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006629 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009791 GO:0009987 GO:0010035 GO:0010038 GO:0010154 GO:0010431 GO:0016052 GO:0016053 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019752 GO:0021700 GO:0022414 GO:0030955 GO:0031420 GO:0032501 GO:0032502 GO:0032504 GO:0032787 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042221 GO:0042866 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046686 GO:0046700 GO:0046872 GO:0046939 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0061458 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00230 ko00620 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 ko04922 ko04930 ko05165 ko05203 ko05230 map00010 map00230 map00620 map01100 map01110 map01120 map01130 map01200 map01230 map04922 map04930 map05165 map05203 map05230

Pfam Domains

Protein Families

PK PK_C

Protein Analysis

113

Amino Acids

12.56

Weight (kDa)

4.71

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011610)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0322031 RchiOBHm_Chr5g0027841 RchiOBHm_Chr5g0027851 RchiOBHm_Chr6g0250351
rosa_multiflora	Rmu_sc0002584.1_g000001 Rmu_sc0002584.1_g000002 Rmu_sc0008159.1_g000015 Rmu_sc0011777.1_g000007 Rmu_sc0011777.1_g000008
rosa_samantha	Rh1AG007800 Rh1AG048600 Rh2CG641700 Rh2DG692400 Rh4AG045500 Rh5AG178300 Rh5DG195900 Rh5DG196000 Rh7DG367300
rosa_wichuraiana	Rw5G026220 Rw7G041350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	2 cut(s)	309, 327
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	3 cut(s)	217, 287, 326
AluI	AGCT	3 cut(s)	217, 287, 326
Alw21I	GWGCWC	1 cut(s)	157
ApeKI	GCWGC	2 cut(s)	214, 319
ApoI	RAATTY	1 cut(s)	7
AspA2I	CCTAGG	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	1 cut(s)	155
AvaII	GGWCC	1 cut(s)	175
AvrII	CCTAGG	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	2 cut(s)	226, 331
BccI	CCATC	2 cut(s)	116, 187
BciVI	GTATCC	1 cut(s)	279
BfaI	CTAG	2 cut(s)	149, 282
BfuI	GTATCC	1 cut(s)	279
BisI	GCNGC	2 cut(s)	215, 320
BlnI	CCTAGG	1 cut(s)	148
BlsI	GCNGC	2 cut(s)	216, 321
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	177
BmsI	GCATC	3 cut(s)	54, 125, 319
Bsa29I	ATCGAT	1 cut(s)	48
BsaJI	CCNNGG	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	135
BseCI	ATCGAT	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	1 cut(s)	108
BseMI	GCAATG	1 cut(s)	135
BseMII	CTCAG	1 cut(s)	170
BseNI	ACTGG	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	226, 331
BseYI	CCCAGC	1 cut(s)	186
BshVI	ATCGAT	1 cut(s)	48
BsiHKAI	GWGCWC	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	157
Bsp143I	GATC	2 cut(s)	105, 261
BspCNI	CTCAG	1 cut(s)	169
BspDI	ATCGAT	1 cut(s)	48
BspHI	TCATGA	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	177
BsrDI	GCAATG	1 cut(s)	135
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	2 cut(s)	105, 261
BssT1I	CCWWGG	1 cut(s)	148
Bst6I	CTCTTC	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	1 cut(s)	156
BstEII	GGTNACC	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	108
BstKTI	GATC	2 cut(s)	108, 264
BstMBI	GATC	2 cut(s)	105, 261
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 223, 293
BstPI	GGTNACC	1 cut(s)	143
BstV1I	GCAGC	2 cut(s)	226, 331
Bsu15I	ATCGAT	1 cut(s)	48
BsuI	GTATCC	1 cut(s)	279
BsuTUI	ATCGAT	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	108
Cac8I	GCNNGC	1 cut(s)	324
CciI	TCATGA	1 cut(s)	18
Cfr13I	GGNCC	1 cut(s)	175
ClaI	ATCGAT	1 cut(s)	48
CviAII	CATG	2 cut(s)	19, 36
CviJI	RGCY	6 cut(s)	185, 217, 226, 287, 296, 326
CviKI_1	RGCY	6 cut(s)	185, 217, 226, 287, 296, 326
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	2 cut(s)	107, 263
DpnII	GATC	2 cut(s)	105, 261
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	175
Eco57I	CTGAAG	2 cut(s)	309, 327
Eco91I	GGTNACC	1 cut(s)	143
EcoO109I	RGGNCCY	1 cut(s)	175
EcoO65I	GGTNACC	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	2 cut(s)	22, 39
FaiI	YATR	4 cut(s)	20, 37, 208, 260
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	2 cut(s)	18, 35
Fnu4HI	GCNGC	2 cut(s)	215, 320
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	2 cut(s)	215, 320
FspBI	CTAG	2 cut(s)	149, 282
GluI	GCNGC	2 cut(s)	215, 320
GsaI	CCCAGC	1 cut(s)	190
Hin1II	CATG	2 cut(s)	22, 39
HinfI	GANTC	2 cut(s)	83, 254
HphI	GGTGA	1 cut(s)	155
Hpy188I	TCNGA	3 cut(s)	121, 159, 307
Hpy188III	TCNNGA	2 cut(s)	19, 313
HpyCH4V	TGCA	2 cut(s)	45, 116
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 223, 293
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	22, 39
Kzo9I	GATC	2 cut(s)	105, 261
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	4 cut(s)	158, 200, 240, 322
Lsp1109I	GCAGC	2 cut(s)	226, 331
LweI	GCATC	3 cut(s)	54, 125, 319
MaeI	CTAG	2 cut(s)	149, 282
MaeIII	GTNAC	1 cut(s)	143
MalI	GATC	2 cut(s)	107, 263
MboI	GATC	2 cut(s)	105, 261
MboII	GAAGA	1 cut(s)	113
MhlI	GDGCHC	1 cut(s)	157
MluCI	AATT	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	77
MnlI	CCTC	2 cut(s)	134, 309
MslI	CAYNNNNRTG	1 cut(s)	40
MwoI	GCNNNNNNNGC	3 cut(s)	134, 223, 293
NdeII	GATC	2 cut(s)	105, 261
NlaIII	CATG	2 cut(s)	22, 39
NlaIV	GGNNCC	1 cut(s)	177
NmuCI	GTSAC	1 cut(s)	143
PagI	TCATGA	1 cut(s)	18
PfeI	GAWTC	1 cut(s)	254
PkrI	GCNGC	2 cut(s)	216, 321
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PpuMI	RGGWCCY	1 cut(s)	175
Psp5II	RGGWCCY	1 cut(s)	175
PspEI	GGTNACC	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	186
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	175
PspPPI	RGGWCCY	1 cut(s)	175
RseI	CAYNNNNRTG	1 cut(s)	40
SatI	GCNGC	2 cut(s)	215, 320
Sau3AI	GATC	2 cut(s)	105, 261
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	77
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	7 cut(s)	145, 150, 154, 177, 219, 289, 328
SfaNI	GCATC	3 cut(s)	54, 125, 319
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	40
Sse9I	AATT	1 cut(s)	7
SspMI	CTAG	2 cut(s)	149, 282
StyI	CCWWGG	1 cut(s)	148
TaqI	TCGA	3 cut(s)	48, 252, 264
TasI	AATT	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	254
TseFI	GTSAC	1 cut(s)	143
TseI	GCWGC	2 cut(s)	214, 319
Tsp45I	GTSAC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	21
VpaK11BI	GGWCC	1 cut(s)	175
XapI	RAATTY	1 cut(s)	7
XmaJI	CCTAGG	1 cut(s)	148
XspI	CTAG	2 cut(s)	149, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.