RchiOBHm_Chr6g0263321

Zinc finger MYM-type protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0017008
Physical Location & Seq
Reverse (-)
18164380 .. 18166854
2475 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23616

Sequence Viewer

Length: 285 bp
ATGGCTCCAATTAGAAAATATCCTTCTGGTGCTCAAAAAAGAAAAGAGAAGCAAAAGAGAGATGCATTAGTTAAGCTTCAAGCCGGATCTCTTAGAGCAATACCAAAAGAAACAAAAAGGGCAGTTGGAGTATTGAACTACTTGAAGCAAATGGATGGTTGTTACCCAAATGCTTGGATTGCTTACAGAATTTTGTTAACCATACCGGTTACTGTTGCCTCTGCTGAGAGAAGCTTTTCAAAATTGAAGTTGATCAAATCTTATCTTCGATCAACTATGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

94

Amino Acids

10.64

Weight (kDa)

10.48

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 40 - 94 2.2e-15 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 94
AcsI RAATTY 1 cut(s) 189
AgeI ACCGGT 1 cut(s) 205
AgsI TTSAA 5 cut(s) 80, 136, 145, 240, 247
AluBI AGCT 2 cut(s) 76, 234
AluI AGCT 2 cut(s) 76, 234
Alw21I GWGCWC 1 cut(s) 34
AlwI GGATC 1 cut(s) 94
ApoI RAATTY 1 cut(s) 189
AsiGI ACCGGT 1 cut(s) 205
Asp700I GAANNNNTTC 1 cut(s) 235
Bbv12I GWGCWC 1 cut(s) 34
BccI CCATC 1 cut(s) 149
BclI TGATCA 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 1 cut(s) 52
BsaWI WCCGGW 1 cut(s) 205
Bse118I RCCGGY 1 cut(s) 205
BseGI GGATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 216
BshTI ACCGGT 1 cut(s) 205
BsiHKAI GWGCWC 1 cut(s) 34
BsiSI CCGG 2 cut(s) 84, 206
Bsp1286I GDGCHC 1 cut(s) 34
Bsp143I GATC 3 cut(s) 86, 252, 269
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 94
BsrFI RCCGGY 1 cut(s) 205
BssAI RCCGGY 1 cut(s) 205
BssMI GATC 3 cut(s) 86, 252, 269
Bst4CI ACNGT 1 cut(s) 214
BstDEI CTNAG 2 cut(s) 92, 225
BstF5I GGATG 1 cut(s) 160
BstKTI GATC 3 cut(s) 89, 255, 272
BstMBI GATC 3 cut(s) 86, 252, 269
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 86
BstXI CCANNNNNNTGG 1 cut(s) 174
BstYI RGATCY 1 cut(s) 86
BtsCI GGATG 1 cut(s) 160
Cfr10I RCCGGY 1 cut(s) 205
CspAI ACCGGT 1 cut(s) 205
CviJI RGCY 4 cut(s) 5, 76, 83, 234
CviKI_1 RGCY 4 cut(s) 5, 76, 83, 234
DdeI CTNAG 2 cut(s) 92, 225
DpnI GATC 3 cut(s) 88, 254, 271
DpnII GATC 3 cut(s) 86, 252, 269
EcoT22I ATGCAT 1 cut(s) 67
FaiI YATR 3 cut(s) 203, 278, 283
FbaI TGATCA 1 cut(s) 252
FokI GGATG 1 cut(s) 167
HapII CCGG 2 cut(s) 84, 206
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HindIII AAGCTT 2 cut(s) 74, 232
HpaI GTTAAC 1 cut(s) 198
HpaII CCGG 2 cut(s) 84, 206
Hpy166II GTNNAC 1 cut(s) 198
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 1 cut(s) 33
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 1 cut(s) 65
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
HpyF3I CTNAG 2 cut(s) 92, 225
Ksp22I TGATCA 1 cut(s) 252
KspAI GTTAAC 1 cut(s) 198
Kzo9I GATC 3 cut(s) 86, 252, 269
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 3 cut(s) 12, 97, 219
LweI GCATC 1 cut(s) 52
MaeIII GTNAC 2 cut(s) 161, 208
MalI GATC 3 cut(s) 88, 254, 271
MboI GATC 3 cut(s) 86, 252, 269
MboII GAAGA 1 cut(s) 257
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 34
MluCI AATT 3 cut(s) 9, 189, 242
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 1 cut(s) 229
Mph1103I ATGCAT 1 cut(s) 67
MroXI GAANNNNTTC 1 cut(s) 235
MseI TTAA 2 cut(s) 72, 197
MspI CCGG 2 cut(s) 84, 206
MwoI GCNNNNNNNGC 1 cut(s) 179
NdeII GATC 3 cut(s) 86, 252, 269
NlaIV GGNNCC 1 cut(s) 6
NsiI ATGCAT 1 cut(s) 67
PdmI GAANNNNTTC 1 cut(s) 235
PinAI ACCGGT 1 cut(s) 205
PspN4I GGNNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 86
SaqAI TTAA 2 cut(s) 72, 197
Sau3AI GATC 3 cut(s) 86, 252, 269
SduI GDGCHC 1 cut(s) 34
SetI ASST 2 cut(s) 78, 236
SfaNI GCATC 1 cut(s) 52
SgeI CNNG 6 cut(s) 39, 92, 96, 154, 186, 218
Sse9I AATT 3 cut(s) 9, 189, 242
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 268
TasI AATT 3 cut(s) 9, 189, 242
Tru1I TTAA 2 cut(s) 72, 197
Tru9I TTAA 2 cut(s) 72, 197
XapI RAATTY 1 cut(s) 189
XmnI GAANNNNTTC 1 cut(s) 235
Zsp2I ATGCAT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.