Rmu_sc0004961.1_g000020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004961.1
OG0017008
Physical Location & Seq
Forward (+)
62651 .. 63025
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004961.1_g000020.1.cds

Sequence Viewer

Length: 375 bp
atggctcctactagaaagtttaagtccggggtgcagaaaagaaaagagaaagagaggagagaagctttacgtaaaactcaagttggttctcttaataagtattttagtagcaacaaagaagaggcatgtcaagctgtgaatgagaatacaagtgaggaaccagagcaggtggtgaatgatcatcatattgaagaggcagaagagctaaatcaatcagagaatgaggaaaataatgaaattctcaatgaagatgttcacaatgcagagccaaatcagtcagagaatgaggaaattaatgacattatcaatgaagatgttcacactacaaattcaactgaggaaattctttttgacatggatgatccagggaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.31

Weight (kDa)

4.42

Isoelectric Point (pI)

80.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 157
Acc36I ACCTGC 1 cut(s) 157
AclWI GGATC 1 cut(s) 356
AcsI RAATTY 3 cut(s) 237, 328, 342
AgsI TTSAA 2 cut(s) 191, 333
AjnI CCWGG 1 cut(s) 364
AluBI AGCT 3 cut(s) 65, 134, 205
AluI AGCT 3 cut(s) 65, 134, 205
AlwI GGATC 1 cut(s) 356
ApoI RAATTY 3 cut(s) 237, 328, 342
AseI ATTAAT 1 cut(s) 294
Asp700I GAANNNNTTC 2 cut(s) 252, 315
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 1 cut(s) 184
BciT130I CCWGG 1 cut(s) 366
BclI TGATCA 1 cut(s) 178
BcnI CCSGG 1 cut(s) 28
BfaI CTAG 1 cut(s) 12
BfuAI ACCTGC 1 cut(s) 157
Bme1390I CCNGG 2 cut(s) 28, 366
BmiI GGNNCC 2 cut(s) 6, 159
BmrFI CCNGG 2 cut(s) 28, 366
BpuEI CTTGAG 1 cut(s) 63
BpuMI CCSGG 1 cut(s) 28
BsaAI YACGTR 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 27, 365
BseBI CCWGG 1 cut(s) 366
BseDI CCNNGG 2 cut(s) 27, 365
BseGI GGATG 1 cut(s) 364
BseMII CTCAG 1 cut(s) 327
BseRI GAGGAG 1 cut(s) 70
BsgI GTGCAG 1 cut(s) 53
BsiSI CCGG 1 cut(s) 27
Bsp143I GATC 2 cut(s) 178, 361
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 2 cut(s) 6, 159
BspMI ACCTGC 1 cut(s) 157
BspPI GGATC 1 cut(s) 356
BspQI GCTCTTC 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 27, 365
BssMI GATC 2 cut(s) 178, 361
Bst2UI CCWGG 1 cut(s) 366
Bst6I CTCTTC 3 cut(s) 114, 186, 195
BstBAI YACGTR 1 cut(s) 71
BstDEI CTNAG 1 cut(s) 336
BstF5I GGATG 1 cut(s) 364
BstKTI GATC 2 cut(s) 181, 364
BstMBI GATC 2 cut(s) 178, 361
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNI CCWGG 1 cut(s) 366
BstNSI RCATGY 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 26, 364
BstSNI TACGTA 1 cut(s) 71
BtsCI GGATG 1 cut(s) 364
BveI ACCTGC 1 cut(s) 157
CviAII CATG 2 cut(s) 126, 355
CviJI RGCY 5 cut(s) 5, 65, 134, 205, 268
CviKI_1 RGCY 5 cut(s) 5, 65, 134, 205, 268
DdeI CTNAG 1 cut(s) 336
DpnI GATC 2 cut(s) 180, 363
DpnII GATC 2 cut(s) 178, 361
Eam1104I CTCTTC 3 cut(s) 114, 186, 195
EarI CTCTTC 3 cut(s) 114, 186, 195
Eco105I TACGTA 1 cut(s) 71
EcoRII CCWGG 1 cut(s) 364
FaeI CATG 2 cut(s) 129, 358
FaiI YATR 3 cut(s) 127, 186, 356
FatI CATG 2 cut(s) 125, 354
FbaI TGATCA 1 cut(s) 178
FokI GGATG 1 cut(s) 371
FspBI CTAG 1 cut(s) 12
HapII CCGG 1 cut(s) 27
Hin1II CATG 2 cut(s) 129, 358
HindIII AAGCTT 1 cut(s) 63
HpaII CCGG 1 cut(s) 27
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 2 cut(s) 256, 319
Hpy188I TCNGA 2 cut(s) 217, 280
Hpy8I GTNNAC 2 cut(s) 256, 319
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 2 cut(s) 34, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 336
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 2 cut(s) 129, 358
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 2 cut(s) 178, 361
LguI GCTCTTC 1 cut(s) 195
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 4 cut(s) 40, 152, 174, 351
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 70
MalI GATC 2 cut(s) 180, 363
MboI GATC 2 cut(s) 178, 361
MboII GAAGA 5 cut(s) 131, 203, 212, 260, 323
MluCI AATT 5 cut(s) 237, 291, 328, 342, 370
MnlI CCTC 7 cut(s) 48, 115, 148, 187, 217, 280, 331
MroXI GAANNNNTTC 2 cut(s) 252, 315
MseI TTAA 3 cut(s) 21, 93, 294
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 2 cut(s) 28, 366
MvaI CCWGG 1 cut(s) 366
MwoI GCNNNNNNNGC 1 cut(s) 131
NciI CCSGG 1 cut(s) 28
NdeII GATC 2 cut(s) 178, 361
NlaIII CATG 2 cut(s) 129, 358
NlaIV GGNNCC 2 cut(s) 6, 159
NspI RCATGY 1 cut(s) 129
PaqCI CACCTGC 1 cut(s) 157
PciSI GCTCTTC 1 cut(s) 195
PdmI GAANNNNTTC 2 cut(s) 252, 315
Ppu21I YACGTR 1 cut(s) 71
PshBI ATTAAT 1 cut(s) 294
Psp6I CCWGG 1 cut(s) 364
PspGI CCWGG 1 cut(s) 364
PspN4I GGNNCC 2 cut(s) 6, 159
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 3 cut(s) 21, 93, 294
Sau3AI GATC 2 cut(s) 178, 361
ScrFI CCNGG 2 cut(s) 28, 366
SetI ASST 5 cut(s) 67, 73, 136, 171, 207
SmlI CTYRAG 1 cut(s) 78
SmoI CTYRAG 1 cut(s) 78
SnaBI TACGTA 1 cut(s) 71
Sse9I AATT 5 cut(s) 237, 291, 328, 342, 370
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 2 cut(s) 26, 364
TaiI ACGT 1 cut(s) 73
TasI AATT 5 cut(s) 237, 291, 328, 342, 370
Tru1I TTAA 3 cut(s) 21, 93, 294
Tru9I TTAA 3 cut(s) 21, 93, 294
TspDTI ATGAA 3 cut(s) 249, 261, 324
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 3 cut(s) 237, 328, 342
XceI RCATGY 1 cut(s) 129
XmnI GAANNNNTTC 2 cut(s) 252, 315
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.