Rroxscaffold_1G00046640

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
65981451 .. 65988450
7000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046640.1

Sequence Viewer

Length: 435 bp
ATGCCCACCCTTCTCAATGAGATTTGGAACCCCAACCCCAATCTCAAATGCCCACTCTTCTCTTTGAAAGGAAGACCACTTGGATACAGCCTCCTTCTCCTTCTTGTCATGCTTAGTCTCCTTCTCACCATTCATCTTAACACGGATTTGGGAATTGGCAAGAGCCAAGAAGGATTTTTGAGTCTAACACAACAATTTCGTTGGGTTATAATGTCATGGCTCCAATTAGAAAATATTCTTCCGGTGCTCAAAAGAGAAAAAGAGAAGCAAAAGAGAGATGCATTAGTTAAGCTTCAAGCCGGATCTCTTAGTAAGTACTTCAACACAAATAATAAACAAGCACAGACTTCAGCTGATGCAAGTATACTTGAGAATGAGAATGAGAAGGATGTTGAAGAATATGATAAGTTAATGACTGAAAATGAGAGTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

16.46

Weight (kDa)

5.88

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 209
AccI GTMKAC 1 cut(s) 364
AclWI GGATC 1 cut(s) 310
AcuI CTGAAG 1 cut(s) 333
AfaI GTAC 1 cut(s) 317
AgsI TTSAA 4 cut(s) 67, 296, 322, 395
AluBI AGCT 2 cut(s) 292, 353
AluI AGCT 2 cut(s) 292, 353
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 310
Asp700I GAANNNNTTC 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 79
Bbv12I GWGCWC 1 cut(s) 249
BciVI GTATCC 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 122
BfuI GTATCC 1 cut(s) 77
BmcAI AGTACT 1 cut(s) 317
BmiI GGNNCC 2 cut(s) 29, 221
BmsI GCATC 2 cut(s) 268, 346
BpiI GAAGAC 1 cut(s) 79
BpuEI CTTGAG 1 cut(s) 389
BsaWI WCCGGW 1 cut(s) 241
BseGI GGATG 1 cut(s) 394
BsiHKAI GWGCWC 1 cut(s) 249
BsiSI CCGG 2 cut(s) 242, 300
BsmAI GTCTC 1 cut(s) 122
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 1 cut(s) 302
BspLI GGNNCC 2 cut(s) 29, 221
BspPI GGATC 1 cut(s) 310
BssMI GATC 1 cut(s) 302
BssNAI GTATAC 1 cut(s) 365
Bst1107I GTATAC 1 cut(s) 365
Bst6I CTCTTC 1 cut(s) 62
BstDEI CTNAG 2 cut(s) 113, 308
BstF5I GGATG 1 cut(s) 394
BstKTI GATC 1 cut(s) 305
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 1 cut(s) 302
BstV2I GAAGAC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 302
BstYI RGATCY 1 cut(s) 302
BstZ17I GTATAC 1 cut(s) 365
BsuI GTATCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 394
Csp6I GTAC 1 cut(s) 316
CviAII CATG 2 cut(s) 109, 216
CviJI RGCY 6 cut(s) 90, 165, 220, 292, 299, 353
CviKI_1 RGCY 6 cut(s) 90, 165, 220, 292, 299, 353
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 2 cut(s) 113, 308
DpnI GATC 1 cut(s) 304
DpnII GATC 1 cut(s) 302
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 333
EcoT22I ATGCAT 1 cut(s) 283
FaeI CATG 2 cut(s) 112, 219
FaiI YATR 6 cut(s) 110, 209, 217, 365, 402, 433
FatI CATG 2 cut(s) 108, 215
FblI GTMKAC 1 cut(s) 364
FokI GGATG 1 cut(s) 401
HapII CCGG 2 cut(s) 242, 300
Hin1II CATG 2 cut(s) 112, 219
HindIII AAGCTT 1 cut(s) 290
HinfI GANTC 1 cut(s) 181
HpaII CCGG 2 cut(s) 242, 300
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 365
Hpy8I GTNNAC 1 cut(s) 365
HpyAV CCTTC 6 cut(s) 20, 104, 110, 131, 164, 379
HpyCH4V TGCA 3 cut(s) 281, 359, 431
HpyF3I CTNAG 2 cut(s) 113, 308
Hsp92II CATG 2 cut(s) 112, 219
Kzo9I GATC 1 cut(s) 302
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 2 cut(s) 255, 313
LweI GCATC 2 cut(s) 268, 346
MalI GATC 1 cut(s) 304
MboI GATC 1 cut(s) 302
MboII GAAGA 4 cut(s) 49, 84, 230, 407
MflI RGATCY 1 cut(s) 302
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 3 cut(s) 153, 194, 224
MlyI GAGTC 1 cut(s) 190
MnlI CCTC 1 cut(s) 101
Mph1103I ATGCAT 1 cut(s) 283
MroXI GAANNNNTTC 1 cut(s) 234
MseI TTAA 3 cut(s) 138, 288, 410
MspA1I CMGCKG 1 cut(s) 353
MspI CCGG 2 cut(s) 242, 300
NdeII GATC 1 cut(s) 302
NlaIII CATG 2 cut(s) 112, 219
NlaIV GGNNCC 2 cut(s) 29, 221
NsiI ATGCAT 1 cut(s) 283
PdmI GAANNNNTTC 1 cut(s) 234
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PsiI TTATAA 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 29, 221
PsuI RGATCY 1 cut(s) 302
PvuII CAGCTG 1 cut(s) 353
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SaqAI TTAA 3 cut(s) 138, 288, 410
Sau3AI GATC 1 cut(s) 302
ScaI AGTACT 1 cut(s) 317
SchI GAGTC 1 cut(s) 190
SduI GDGCHC 1 cut(s) 249
SetI ASST 2 cut(s) 294, 355
SfaNI GCATC 2 cut(s) 268, 346
SmlI CTYRAG 1 cut(s) 368
SmoI CTYRAG 1 cut(s) 368
Sse9I AATT 3 cut(s) 153, 194, 224
SspI AATATT 1 cut(s) 235
TasI AATT 3 cut(s) 153, 194, 224
TatI WGTACW 1 cut(s) 315
Tru1I TTAA 3 cut(s) 138, 288, 410
Tru9I TTAA 3 cut(s) 138, 288, 410
TspDTI ATGAA 1 cut(s) 122
TspGWI ACGGA 1 cut(s) 158
XmiI GTMKAC 1 cut(s) 364
XmnI GAANNNNTTC 1 cut(s) 234
ZrmI AGTACT 1 cut(s) 317
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.