DNA-binding transcription factor activity, RNA polymerase II-specific
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0080901 RchiOBHm_Chr6g0263321 |
| rosa_multiflora | Rmu_sc0004961.1_g000020 |
| rosa_roxburghii | Rroxscaffold_1G00046640 Rroxscaffold_4G00295330 Rroxscaffold_5G00335240 Rroxscaffold_7G00185610 |
| rosa_samantha | Rh1BG163700 Rh1CG117100 Rh2CG360100 Rh4BG172900 Rh5DG247700 Rh7AG117800 Rh7BG240600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 80, 92 |
| AfaI | GTAC | 2 cut(s) | 199, 224 |
| AgsI | TTSAA | 2 cut(s) | 188, 204 |
| AjnI | CCWGG | 1 cut(s) | 99 |
| AluBI | AGCT | 2 cut(s) | 14, 184 |
| AluI | AGCT | 2 cut(s) | 14, 184 |
| ApoI | RAATTY | 2 cut(s) | 80, 92 |
| BccI | CCATC | 1 cut(s) | 103 |
| BciT130I | CCWGG | 1 cut(s) | 101 |
| BciVI | GTATCC | 1 cut(s) | 138 |
| BfuI | GTATCC | 1 cut(s) | 138 |
| Bme1390I | CCNGG | 1 cut(s) | 101 |
| BmiI | GGNNCC | 1 cut(s) | 114 |
| BmrFI | CCNGG | 1 cut(s) | 101 |
| BmsI | GCATC | 1 cut(s) | 22 |
| BoxI | GACNNNNGTC | 1 cut(s) | 71 |
| BpmI | CTGGAG | 1 cut(s) | 83 |
| BseBI | CCWGG | 1 cut(s) | 101 |
| BseGI | GGATG | 1 cut(s) | 200 |
| BsiSI | CCGG | 1 cut(s) | 192 |
| BspHI | TCATGA | 1 cut(s) | 63 |
| BspLI | GGNNCC | 1 cut(s) | 114 |
| Bst2UI | CCWGG | 1 cut(s) | 101 |
| BstF5I | GGATG | 1 cut(s) | 200 |
| BstNI | CCWGG | 1 cut(s) | 101 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 71 |
| BstSCI | CCNGG | 1 cut(s) | 99 |
| BsuI | GTATCC | 1 cut(s) | 138 |
| BtsCI | GGATG | 1 cut(s) | 200 |
| CciI | TCATGA | 1 cut(s) | 63 |
| Csp6I | GTAC | 2 cut(s) | 198, 223 |
| CviAII | CATG | 1 cut(s) | 64 |
| CviJI | RGCY | 4 cut(s) | 14, 113, 184, 191 |
| CviKI_1 | RGCY | 4 cut(s) | 14, 113, 184, 191 |
| CviQI | GTAC | 2 cut(s) | 198, 223 |
| EcoRII | CCWGG | 1 cut(s) | 99 |
| FaeI | CATG | 1 cut(s) | 67 |
| FaiI | YATR | 2 cut(s) | 65, 107 |
| FatI | CATG | 1 cut(s) | 63 |
| FokI | GGATG | 1 cut(s) | 207 |
| GsuI | CTGGAG | 1 cut(s) | 83 |
| HapII | CCGG | 1 cut(s) | 192 |
| Hin1II | CATG | 1 cut(s) | 67 |
| HindIII | AAGCTT | 2 cut(s) | 12, 182 |
| HinfI | GANTC | 1 cut(s) | 5 |
| HpaII | CCGG | 1 cut(s) | 192 |
| Hpy188I | TCNGA | 1 cut(s) | 117 |
| Hpy188III | TCNNGA | 3 cut(s) | 64, 76, 88 |
| HpyAV | CCTTC | 1 cut(s) | 141 |
| HpyCH4V | TGCA | 2 cut(s) | 21, 35 |
| Hsp92II | CATG | 1 cut(s) | 67 |
| LmnI | GCTCC | 1 cut(s) | 118 |
| LpnPI | CCDG | 5 cut(s) | 86, 101, 113, 120, 205 |
| LweI | GCATC | 1 cut(s) | 22 |
| MaeIII | GTNAC | 1 cut(s) | 73 |
| MluCI | AATT | 3 cut(s) | 38, 80, 92 |
| MnlI | CCTC | 1 cut(s) | 163 |
| MseI | TTAA | 2 cut(s) | 141, 180 |
| MspI | CCGG | 1 cut(s) | 192 |
| MspR9I | CCNGG | 1 cut(s) | 101 |
| MvaI | CCWGG | 1 cut(s) | 101 |
| NlaIII | CATG | 1 cut(s) | 67 |
| NlaIV | GGNNCC | 1 cut(s) | 114 |
| NmuCI | GTSAC | 1 cut(s) | 73 |
| PagI | TCATGA | 1 cut(s) | 63 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 74 |
| PfeI | GAWTC | 1 cut(s) | 5 |
| PshAI | GACNNNNGTC | 1 cut(s) | 71 |
| Psp6I | CCWGG | 1 cut(s) | 99 |
| PspGI | CCWGG | 1 cut(s) | 99 |
| PspN4I | GGNNCC | 1 cut(s) | 114 |
| RsaI | GTAC | 2 cut(s) | 199, 224 |
| RsaNI | GTAC | 2 cut(s) | 198, 223 |
| SaqAI | TTAA | 2 cut(s) | 141, 180 |
| ScrFI | CCNGG | 1 cut(s) | 101 |
| SetI | ASST | 3 cut(s) | 16, 105, 186 |
| SfaNI | GCATC | 1 cut(s) | 22 |
| Sse9I | AATT | 3 cut(s) | 38, 80, 92 |
| StyD4I | CCNGG | 1 cut(s) | 99 |
| TasI | AATT | 3 cut(s) | 38, 80, 92 |
| TatI | WGTACW | 2 cut(s) | 197, 222 |
| TfiI | GAWTC | 1 cut(s) | 5 |
| Tru1I | TTAA | 2 cut(s) | 141, 180 |
| Tru9I | TTAA | 2 cut(s) | 141, 180 |
| TseFI | GTSAC | 1 cut(s) | 73 |
| Tsp45I | GTSAC | 1 cut(s) | 73 |
| TspDTI | ATGAA | 1 cut(s) | 230 |
| XapI | RAATTY | 2 cut(s) | 80, 92 |