Rh7BG240600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017008
Physical Location & Seq
Forward (+)
21259081 .. 21260884
1804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG240600.1

Sequence Viewer

Length: 219 bp
ATGCAGTCTGCAAAGGAGAAGATCAGTAACTTGGCCAGTGCTGCCAAGGAGAAAGAAGAGACTCACAAAGCCAAAACGGAAGAGAAGGACCGCGGTTCCATCGTATCCCCTGGGAGGTTACAGCACCCGAAAACTGCCCTAGTCGTAGCTAAGCGAGCTTCACAACTAAAAGTGAGCGTCACAACTAAAACAGTGATCGAGACACCGAGAGGAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.84

Weight (kDa)

10.14

Isoelectric Point (pI)

41.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_1 PF03760 1 - 29 4.6e-07 Late embryogenesis abundant (LEA) group 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 93
AciI CCGC 2 cut(s) 91, 93
AcoI YGGCCR 1 cut(s) 33
AfiI CCNNNNNNNGG 1 cut(s) 114
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 2 cut(s) 149, 158
AluI AGCT 2 cut(s) 149, 158
Alw26I GTCTC 2 cut(s) 53, 194
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 88
AvaII GGWCC 1 cut(s) 88
BalI TGGCCA 1 cut(s) 35
BbvI GCAGC 1 cut(s) 28
BccI CCATC 1 cut(s) 107
BciT130I CCWGG 1 cut(s) 111
BciVI GTATCC 1 cut(s) 115
BcoDI GTCTC 2 cut(s) 53, 194
BfaI CTAG 1 cut(s) 140
BfuI GTATCC 1 cut(s) 115
BisI GCNGC 1 cut(s) 42
BlpI GCTNAGC 1 cut(s) 150
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 111
Bme18I GGWCC 1 cut(s) 88
BmgT120I GGNCC 1 cut(s) 88
BmiI GGNNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 111
Bpu1102I GCTNAGC 1 cut(s) 150
BsaJI CCNNGG 4 cut(s) 45, 91, 109, 110
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 36
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 4 cut(s) 45, 91, 109, 110
BseLI CCNNNNNNNGG 1 cut(s) 114
BseNI ACTGG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 28
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 35
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 53, 194
BsnI GGCC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 21, 195
Bsp1720I GCTNAGC 1 cut(s) 150
BspACI CCGC 2 cut(s) 91, 93
BspANI GGCC 1 cut(s) 35
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 97
BsrI ACTGG 1 cut(s) 36
BssECI CCNNGG 4 cut(s) 45, 91, 109, 110
BssMI GATC 2 cut(s) 21, 195
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 193
Bst6I CTCTTC 2 cut(s) 51, 75
BstC8I GCNNGC 1 cut(s) 156
BstDEI CTNAG 1 cut(s) 150
BstDSI CCRYGG 1 cut(s) 91
BstFNI CGCG 1 cut(s) 93
BstKTI GATC 2 cut(s) 24, 198
BstMAI GTCTC 2 cut(s) 53, 194
BstMBI GATC 2 cut(s) 21, 195
BstMWI GCNNNNNNNGC 2 cut(s) 41, 155
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 109
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 28
BsuI GTATCC 1 cut(s) 115
BsuRI GGCC 1 cut(s) 35
BtgI CCRYGG 1 cut(s) 91
BtsIMutI CAGTG 2 cut(s) 43, 198
Cac8I GCNNGC 1 cut(s) 156
Cfr13I GGNCC 1 cut(s) 88
Cfr42I CCGCGG 1 cut(s) 94
CseI GACGC 1 cut(s) 166
CviJI RGCY 4 cut(s) 35, 71, 149, 158
CviKI_1 RGCY 4 cut(s) 35, 71, 149, 158
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 23, 197
DpnII GATC 2 cut(s) 21, 195
EaeI YGGCCR 1 cut(s) 33
Eam1104I CTCTTC 2 cut(s) 51, 75
EarI CTCTTC 2 cut(s) 51, 75
Eco130I CCWWGG 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 1 cut(s) 140
GluI GCNGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 35
HgaI GACGC 1 cut(s) 166
HinfI GANTC 1 cut(s) 61
Hpy188III TCNNGA 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 2 cut(s) 4, 11
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 155
HpyF3I CTNAG 1 cut(s) 150
KspI CCGCGG 1 cut(s) 94
Kzo9I GATC 2 cut(s) 21, 195
LpnPI CCDG 3 cut(s) 49, 96, 123
Lsp1109I GCAGC 1 cut(s) 28
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 3 cut(s) 26, 117, 178
MalI GATC 2 cut(s) 23, 197
MboI GATC 2 cut(s) 21, 195
MboII GAAGA 3 cut(s) 31, 68, 92
MlsI TGGCCA 1 cut(s) 35
MluNI TGGCCA 1 cut(s) 35
MlyI GAGTC 1 cut(s) 55
MnlI CCTC 2 cut(s) 108, 203
Mox20I TGGCCA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 35
MspA1I CMGCKG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 111
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 2 cut(s) 41, 155
NdeII GATC 2 cut(s) 21, 195
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 178
PasI CCCWGGG 1 cut(s) 110
PkrI GCNGC 1 cut(s) 43
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 88
SacII CCGCGG 1 cut(s) 94
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 2 cut(s) 21, 195
Sau96I GGNCC 1 cut(s) 88
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 111
SetI ASST 3 cut(s) 119, 151, 160
Sfr303I CCGCGG 1 cut(s) 94
SgrBI CCGCGG 1 cut(s) 94
SinI GGWCC 1 cut(s) 88
SsiI CCGC 2 cut(s) 91, 93
SspMI CTAG 1 cut(s) 140
StyD4I CCNGG 1 cut(s) 109
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 1 cut(s) 198
TscAI CASTG 2 cut(s) 43, 198
TseFI GTSAC 1 cut(s) 178
TseI GCWGC 1 cut(s) 41
Tsp45I GTSAC 1 cut(s) 178
TspGWI ACGGA 1 cut(s) 92
TspRI CASTG 2 cut(s) 43, 198
VpaK11BI GGWCC 1 cut(s) 88
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.