Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0017008

Physical Location & Seq

Genomic Coordinates Reverse (-)

26343330 .. 26345080

Gene Structure 1751 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG163700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGAAATTCGTCCAGAAATTTCTCGAGGTTATGATGGCTCCGATTAGGAAGTATCCTTTTGGGGTTAAAAAAAGAAAAGAGAAGCAAAAGAGAGAGGCATTGGTTAAGCTTCAAGTTGGATCACGGCATCGGTCGGAAATTGGATTGCATCGTGGAGGCCAACAGTTAATTGTTCCTGAGAAGATCAGTAACTTGGCCAGTGCTGCCAAGGAGAAAGTAGAGACTCACAAAGCCAAAACGGAAGAGAAGGTTGAGAAGATGACAGAGGAAGGACACATGAGTAAGAGGAAGGACACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FCS

Protein Analysis

99

Amino Acids

11.47

Weight (kDa)

10.13

Isoelectric Point (pI)

62.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_1	PF03760	60 - 95	2.9e-07	Late embryogenesis abundant (LEA) group 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017008)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0080901 RchiOBHm_Chr6g0263321
rosa_multiflora	Rmu_sc0004961.1_g000020
rosa_roxburghii	Rroxscaffold_1G00046640 Rroxscaffold_4G00295330 Rroxscaffold_5G00335240 Rroxscaffold_7G00185610
rosa_samantha	Rh1BG163700 Rh1CG117100 Rh2CG360100 Rh4BG172900 Rh5DG247700 Rh7AG117800 Rh7BG240600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	127
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	2 cut(s)	5, 17
AgsI	TTSAA	1 cut(s)	113
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw26I	GTCTC	1 cut(s)	215
AlwI	GGATC	1 cut(s)	127
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	2 cut(s)	157, 195
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	2 cut(s)	5, 17
AvaI	CYCGRG	1 cut(s)	23
BalI	TGGCCA	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	1 cut(s)	28
BceAI	ACGGC	1 cut(s)	140
BciVI	GTATCC	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	215
BfuI	GTATCC	1 cut(s)	63
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	23
BmiI	GGNNCC	1 cut(s)	39
BmsI	GCATC	2 cut(s)	136, 157
BsaJI	CCNNGG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	207
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	1 cut(s)	198
BseXI	GCAGC	1 cut(s)	190
Bsh1285I	CGRYCG	1 cut(s)	134
BshFI	GGCC	2 cut(s)	159, 197
BsiEI	CGRYCG	1 cut(s)	134
BsiHKCI	CYCGRG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	159, 197
BsoBI	CYCGRG	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	119, 183
BspANI	GGCC	2 cut(s)	159, 197
BspCNI	CTCAG	1 cut(s)	169
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	207
BssMI	GATC	2 cut(s)	119, 183
BssT1I	CCWWGG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	165
Bst6I	CTCTTC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	177
BstKTI	GATC	2 cut(s)	122, 186
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	2 cut(s)	119, 183
BstMCI	CGRYCG	1 cut(s)	134
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstV1I	GCAGC	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	63
BsuRI	GGCC	2 cut(s)	159, 197
BtsIMutI	CAGTG	1 cut(s)	205
CviAII	CATG	2 cut(s)	277, 297
CviJI	RGCY	5 cut(s)	38, 109, 159, 197, 233
CviKI_1	RGCY	5 cut(s)	38, 109, 159, 197, 233
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	2 cut(s)	121, 185
DpnII	GATC	2 cut(s)	119, 183
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco130I	CCWWGG	1 cut(s)	207
Eco88I	CYCGRG	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	280, 300
FaiI	YATR	3 cut(s)	32, 278, 298
FatI	CATG	2 cut(s)	276, 296
Fnu4HI	GCNGC	1 cut(s)	204
Fsp4HI	GCNGC	1 cut(s)	204
GluI	GCNGC	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	159, 197
Hin1II	CATG	2 cut(s)	280, 300
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	1 cut(s)	223
Hpy188I	TCNGA	2 cut(s)	42, 136
Hpy188III	TCNNGA	3 cut(s)	13, 23, 176
HpyAV	CCTTC	3 cut(s)	241, 263, 283
HpyCH4III	ACNGT	1 cut(s)	165
HpyCH4V	TGCA	1 cut(s)	148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	1 cut(s)	177
Hsp92II	CATG	2 cut(s)	280, 300
Kzo9I	GATC	2 cut(s)	119, 183
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	3 cut(s)	26, 189, 211
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	2 cut(s)	136, 157
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	2 cut(s)	121, 185
MboI	GATC	2 cut(s)	119, 183
MboII	GAAGA	3 cut(s)	193, 254, 268
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	4 cut(s)	5, 17, 138, 168
MluNI	TGGCCA	1 cut(s)	197
MlyI	GAGTC	1 cut(s)	217
MmeI	TCCRAC	2 cut(s)	97, 114
MnlI	CCTC	5 cut(s)	19, 88, 149, 259, 279
Mox20I	TGGCCA	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	197
MseI	TTAA	3 cut(s)	66, 105, 167
Msp20I	TGGCCA	1 cut(s)	197
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeII	GATC	2 cut(s)	119, 183
NlaIII	CATG	2 cut(s)	280, 300
NlaIV	GGNNCC	1 cut(s)	39
PaeR7I	CTCGAG	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	66, 105, 167
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	2 cut(s)	119, 183
SchI	GAGTC	1 cut(s)	217
SetI	ASST	3 cut(s)	30, 111, 252
SfaNI	GCATC	2 cut(s)	136, 157
Sfr274I	CTCGAG	1 cut(s)	23
SlaI	CTCGAG	1 cut(s)	23
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	4 cut(s)	5, 17, 138, 168
StyI	CCWWGG	1 cut(s)	207
TaaI	ACNGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	24
TaqII	GACCGA	1 cut(s)	120
TasI	AATT	4 cut(s)	5, 17, 138, 168
Tru1I	TTAA	3 cut(s)	66, 105, 167
Tru9I	TTAA	3 cut(s)	66, 105, 167
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	1 cut(s)	203
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	254
TspRI	CASTG	1 cut(s)	205
XapI	RAATTY	2 cut(s)	5, 17
XhoI	CTCGAG	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.