Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0017008

Physical Location & Seq

Genomic Coordinates Reverse (-)

48666913 .. 48667395

Gene Structure 483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG360100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCTCCTACTAGAAAGTTTAATTCTGGGGCTCAGAAAAGAAAAGAGAAAGAAAGGAGAGAAGCTTTACATAAAACTCAAGTTGGTTATCTAAATAAGTATTTTAGTAGCAACAAAGAAGAAGCATGTCAAGCTGTGAATGAGAATATAAGTGAGGAACCAGAGCAGTTGGTGAATGATCATCATATTGAAGAGGCAGAAGAGTTTAATGACCATATCAATGGAGACGTTCACACTACAAATTCAAGTGAGGAGATTCTTTTTGACATGGATGATCCAGGGAATTGGAATTGGACAGACCAAAATATCACAGATTTTTTGGTTGAAAGAGGCCCGAAAAGAGACAATAATGTCATCTTTCCGAAAGATAAATGTGACAGGTGTTTTTCATCAAAGCATTACTTCAGAGAATTACCAAATGGAGGCTGGTATATTCGGTTTCTTTGGATAAATTTTTTTGCTTTTGTTGTAAATTGTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FCS

Protein Analysis

160

Amino Acids

18.97

Weight (kDa)

5.25

Isoelectric Point (pI)

64.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017008)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0080901 RchiOBHm_Chr6g0263321
rosa_multiflora	Rmu_sc0004961.1_g000020
rosa_roxburghii	Rroxscaffold_1G00046640 Rroxscaffold_4G00295330 Rroxscaffold_5G00335240 Rroxscaffold_7G00185610
rosa_samantha	Rh1BG163700 Rh1CG117100 Rh2CG360100 Rh4BG172900 Rh5DG247700 Rh7AG117800 Rh7BG240600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	350
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	2 cut(s)	241, 451
AcuI	CTGAAG	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	3 cut(s)	191, 246, 326
AjnI	CCWGG	1 cut(s)	277
AluBI	AGCT	2 cut(s)	65, 134
AluI	AGCT	2 cut(s)	65, 134
Alw26I	GTCTC	3 cut(s)	9, 219, 336
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	1 cut(s)	331
ApoI	RAATTY	2 cut(s)	241, 451
AspS9I	GGNCC	1 cut(s)	332
AsuHPI	GGTGA	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	279
BclI	TGATCA	1 cut(s)	178
BcoDI	GTCTC	3 cut(s)	9, 219, 336
BfaI	CTAG	1 cut(s)	12
Bme1390I	CCNGG	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	279
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMII	CTCAG	1 cut(s)	47
BseRI	GAGGAG	1 cut(s)	266
BshFI	GGCC	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	3 cut(s)	9, 219, 336
BsmBI	CGTCTC	1 cut(s)	219
BsnI	GGCC	1 cut(s)	333
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp143I	GATC	2 cut(s)	178, 274
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	1 cut(s)	46
BspLI	GGNNCC	1 cut(s)	159
BspPI	GGATC	1 cut(s)	269
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	2 cut(s)	178, 274
Bst2UI	CCWGG	1 cut(s)	279
Bst6I	CTCTTC	2 cut(s)	186, 195
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	277
BstKTI	GATC	2 cut(s)	181, 277
BstMAI	GTCTC	3 cut(s)	9, 219, 336
BstMBI	GATC	2 cut(s)	178, 274
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	1 cut(s)	279
BstNSI	RCATGY	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	277
BstXI	CCANNNNNNTGG	2 cut(s)	221, 285
BsuRI	GGCC	1 cut(s)	333
BtsCI	GGATG	1 cut(s)	277
Cfr13I	GGNCC	1 cut(s)	332
CviAII	CATG	2 cut(s)	126, 268
CviJI	RGCY	5 cut(s)	32, 65, 134, 333, 426
CviKI_1	RGCY	5 cut(s)	32, 65, 134, 333, 426
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	2 cut(s)	180, 276
DpnII	GATC	2 cut(s)	178, 274
DrdI	GACNNNNNNGTC	1 cut(s)	350
DseDI	GACNNNNNNGTC	1 cut(s)	350
Eam1104I	CTCTTC	2 cut(s)	186, 195
EarI	CTCTTC	2 cut(s)	186, 195
Eco24I	GRGCYC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	34
Esp3I	CGTCTC	1 cut(s)	219
FaeI	CATG	2 cut(s)	129, 271
FaiI	YATR	7 cut(s)	72, 127, 149, 186, 216, 269, 432
FalI	AAGNNNNNCTT	2 cut(s)	386, 418
FatI	CATG	2 cut(s)	125, 267
FbaI	TGATCA	1 cut(s)	178
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	34
FspBI	CTAG	1 cut(s)	12
HaeIII	GGCC	1 cut(s)	333
Hin1II	CATG	2 cut(s)	129, 271
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	1 cut(s)	256
HphI	GGTGA	1 cut(s)	184
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	3 cut(s)	36, 363, 407
Hpy8I	GTNNAC	1 cut(s)	232
HpyCH4IV	ACGT	1 cut(s)	228
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	33
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	2 cut(s)	129, 271
Ksp22I	TGATCA	1 cut(s)	178
Kzo9I	GATC	2 cut(s)	178, 274
LpnPI	CCDG	6 cut(s)	12, 174, 264, 291, 364, 412
MaeI	CTAG	1 cut(s)	12
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	374
MalI	GATC	2 cut(s)	180, 276
MboI	GATC	2 cut(s)	178, 274
MboII	GAAGA	3 cut(s)	131, 203, 212
MhlI	GDGCHC	1 cut(s)	34
MluCI	AATT	7 cut(s)	22, 241, 283, 289, 410, 451, 472
MnlI	CCTC	5 cut(s)	148, 187, 244, 323, 416
MseI	TTAA	3 cut(s)	21, 207, 481
MslI	CAYNNNNRTG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	2 cut(s)	178, 274
NlaIII	CATG	2 cut(s)	129, 271
NlaIV	GGNNCC	1 cut(s)	159
NmuCI	GTSAC	1 cut(s)	374
NspI	RCATGY	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	256
Psp6I	CCWGG	1 cut(s)	277
PspGI	CCWGG	1 cut(s)	277
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	332
RseI	CAYNNNNRTG	1 cut(s)	219
SaqAI	TTAA	3 cut(s)	21, 207, 481
Sau3AI	GATC	2 cut(s)	178, 274
Sau96I	GGNCC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	279
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	4 cut(s)	67, 136, 231, 383
SmiMI	CAYNNNNRTG	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	78
SmoI	CTYRAG	1 cut(s)	78
Sse9I	AATT	7 cut(s)	22, 241, 283, 289, 410, 451, 472
SspMI	CTAG	1 cut(s)	12
StyD4I	CCNGG	1 cut(s)	277
TaiI	ACGT	1 cut(s)	231
TasI	AATT	7 cut(s)	22, 241, 283, 289, 410, 451, 472
TfiI	GAWTC	1 cut(s)	256
Tru1I	TTAA	3 cut(s)	21, 207, 481
Tru9I	TTAA	3 cut(s)	21, 207, 481
TseFI	GTSAC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	378
XapI	RAATTY	2 cut(s)	241, 451
XceI	RCATGY	1 cut(s)	129
XcmI	CCANNNNNNNNNTGG	1 cut(s)	423
XspI	CTAG	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.