DNA-binding transcription factor activity, RNA polymerase II-specific
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0080901 RchiOBHm_Chr6g0263321 |
| rosa_multiflora | Rmu_sc0004961.1_g000020 |
| rosa_roxburghii | Rroxscaffold_1G00046640 Rroxscaffold_4G00295330 Rroxscaffold_5G00335240 Rroxscaffold_7G00185610 |
| rosa_samantha | Rh1BG163700 Rh1CG117100 Rh2CG360100 Rh4BG172900 Rh5DG247700 Rh7AG117800 Rh7BG240600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AdeI | CACNNNGTG | 1 cut(s) | 116 |
| AfaI | GTAC | 1 cut(s) | 101 |
| AgsI | TTSAA | 2 cut(s) | 80, 216 |
| AluBI | AGCT | 3 cut(s) | 76, 210, 282 |
| AluI | AGCT | 3 cut(s) | 76, 210, 282 |
| Alw26I | GTCTC | 4 cut(s) | 93, 131, 137, 167 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 211 |
| BciVI | GTATCC | 1 cut(s) | 30 |
| BcoDI | GTCTC | 4 cut(s) | 93, 131, 137, 167 |
| BfuI | GTATCC | 1 cut(s) | 30 |
| BmcAI | AGTACT | 1 cut(s) | 101 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmsI | GCATC | 1 cut(s) | 52 |
| BsaI | GGTCTC | 2 cut(s) | 93, 131 |
| BseMII | CTCAG | 2 cut(s) | 138, 168 |
| BsmAI | GTCTC | 4 cut(s) | 93, 131, 137, 167 |
| Bso31I | GGTCTC | 2 cut(s) | 93, 131 |
| Bsp143I | GATC | 2 cut(s) | 229, 246 |
| BspCNI | CTCAG | 2 cut(s) | 139, 169 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspTNI | GGTCTC | 2 cut(s) | 93, 131 |
| BssMI | GATC | 2 cut(s) | 229, 246 |
| BstDEI | CTNAG | 2 cut(s) | 147, 177 |
| BstKTI | GATC | 2 cut(s) | 232, 249 |
| BstMAI | GTCTC | 4 cut(s) | 93, 131, 137, 167 |
| BstMBI | GATC | 2 cut(s) | 229, 246 |
| BsuI | GTATCC | 1 cut(s) | 30 |
| Csp6I | GTAC | 1 cut(s) | 100 |
| CviJI | RGCY | 5 cut(s) | 5, 32, 76, 210, 282 |
| CviKI_1 | RGCY | 5 cut(s) | 5, 32, 76, 210, 282 |
| CviQI | GTAC | 1 cut(s) | 100 |
| DdeI | CTNAG | 2 cut(s) | 147, 177 |
| DpnI | GATC | 2 cut(s) | 231, 248 |
| DpnII | GATC | 2 cut(s) | 229, 246 |
| DraIII | CACNNNGTG | 1 cut(s) | 116 |
| Eco31I | GGTCTC | 2 cut(s) | 93, 131 |
| EcoT22I | ATGCAT | 1 cut(s) | 67 |
| FaiI | YATR | 6 cut(s) | 96, 114, 129, 185, 255, 285 |
| FspEI | CC | 9 cut(s) | 12, 13, 14, 21, 36, 69, 70, 154, 259 |
| HindIII | AAGCTT | 2 cut(s) | 74, 208 |
| HpyAV | CCTTC | 1 cut(s) | 33 |
| HpyCH4V | TGCA | 2 cut(s) | 65, 110 |
| HpyF3I | CTNAG | 2 cut(s) | 147, 177 |
| Kzo9I | GATC | 2 cut(s) | 229, 246 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| LpnPI | CCDG | 1 cut(s) | 12 |
| LweI | GCATC | 1 cut(s) | 52 |
| MaeIII | GTNAC | 1 cut(s) | 256 |
| MalI | GATC | 2 cut(s) | 231, 248 |
| MboI | GATC | 2 cut(s) | 229, 246 |
| MboII | GAAGA | 1 cut(s) | 234 |
| MluCI | AATT | 2 cut(s) | 9, 218 |
| Mph1103I | ATGCAT | 1 cut(s) | 67 |
| MroXI | GAANNNNTTC | 1 cut(s) | 211 |
| MseI | TTAA | 2 cut(s) | 105, 221 |
| MslI | CAYNNNNRTG | 1 cut(s) | 132 |
| NdeII | GATC | 2 cut(s) | 229, 246 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| NmuCI | GTSAC | 1 cut(s) | 256 |
| NsiI | ATGCAT | 1 cut(s) | 67 |
| PdmI | GAANNNNTTC | 1 cut(s) | 211 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| RsaI | GTAC | 1 cut(s) | 101 |
| RsaNI | GTAC | 1 cut(s) | 100 |
| RseI | CAYNNNNRTG | 1 cut(s) | 132 |
| SaqAI | TTAA | 2 cut(s) | 105, 221 |
| Sau3AI | GATC | 2 cut(s) | 229, 246 |
| ScaI | AGTACT | 1 cut(s) | 101 |
| SetI | ASST | 3 cut(s) | 78, 212, 284 |
| SfaNI | GCATC | 1 cut(s) | 52 |
| SgeI | CNNG | 5 cut(s) | 39, 85, 92, 154, 273 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 132 |
| Sse9I | AATT | 2 cut(s) | 9, 218 |
| TaqI | TCGA | 1 cut(s) | 245 |
| TaqII | GACCGA | 1 cut(s) | 155 |
| TasI | AATT | 2 cut(s) | 9, 218 |
| TatI | WGTACW | 1 cut(s) | 99 |
| Tru1I | TTAA | 2 cut(s) | 105, 221 |
| Tru9I | TTAA | 2 cut(s) | 105, 221 |
| TseFI | GTSAC | 1 cut(s) | 256 |
| Tsp45I | GTSAC | 1 cut(s) | 256 |
| TspDTI | ATGAA | 1 cut(s) | 200 |
| XmnI | GAANNNNTTC | 1 cut(s) | 211 |
| ZrmI | AGTACT | 1 cut(s) | 101 |
| Zsp2I | ATGCAT | 1 cut(s) | 67 |