DNA-binding transcription factor activity, RNA polymerase II-specific
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr5g0080901 RchiOBHm_Chr6g0263321 |
| rosa_multiflora | Rmu_sc0004961.1_g000020 |
| rosa_roxburghii | Rroxscaffold_1G00046640 Rroxscaffold_4G00295330 Rroxscaffold_5G00335240 Rroxscaffold_7G00185610 |
| rosa_samantha | Rh1BG163700 Rh1CG117100 Rh2CG360100 Rh4BG172900 Rh5DG247700 Rh7AG117800 Rh7BG240600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 148 |
| AclWI | GGATC | 1 cut(s) | 94 |
| AcuI | CTGAAG | 1 cut(s) | 117 |
| AfaI | GTAC | 1 cut(s) | 101 |
| AgsI | TTSAA | 3 cut(s) | 80, 106, 179 |
| AluBI | AGCT | 2 cut(s) | 76, 137 |
| AluI | AGCT | 2 cut(s) | 76, 137 |
| Alw21I | GWGCWC | 1 cut(s) | 34 |
| AlwI | GGATC | 1 cut(s) | 94 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 19 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 60, 92 |
| Bbv12I | GWGCWC | 1 cut(s) | 34 |
| BclI | TGATCA | 1 cut(s) | 187 |
| BmcAI | AGTACT | 1 cut(s) | 101 |
| BmiI | GGNNCC | 1 cut(s) | 6 |
| BmsI | GCATC | 2 cut(s) | 52, 130 |
| BpuEI | CTTGAG | 1 cut(s) | 173 |
| BsaWI | WCCGGW | 1 cut(s) | 26 |
| BseGI | GGATG | 1 cut(s) | 178 |
| BsiHKAI | GWGCWC | 1 cut(s) | 34 |
| BsiSI | CCGG | 2 cut(s) | 27, 84 |
| Bsp1286I | GDGCHC | 1 cut(s) | 34 |
| Bsp143I | GATC | 2 cut(s) | 86, 187 |
| BspLI | GGNNCC | 1 cut(s) | 6 |
| BspPI | GGATC | 1 cut(s) | 94 |
| BssMI | GATC | 2 cut(s) | 86, 187 |
| BssNAI | GTATAC | 1 cut(s) | 149 |
| Bst1107I | GTATAC | 1 cut(s) | 149 |
| BstDEI | CTNAG | 1 cut(s) | 92 |
| BstF5I | GGATG | 1 cut(s) | 178 |
| BstKTI | GATC | 2 cut(s) | 89, 190 |
| BstMBI | GATC | 2 cut(s) | 86, 187 |
| BstX2I | RGATCY | 1 cut(s) | 86 |
| BstYI | RGATCY | 1 cut(s) | 86 |
| BstZ17I | GTATAC | 1 cut(s) | 149 |
| BtsCI | GGATG | 1 cut(s) | 178 |
| Csp6I | GTAC | 1 cut(s) | 100 |
| CviAII | CATG | 1 cut(s) | 185 |
| CviJI | RGCY | 4 cut(s) | 5, 76, 83, 137 |
| CviKI_1 | RGCY | 4 cut(s) | 5, 76, 83, 137 |
| CviQI | GTAC | 1 cut(s) | 100 |
| DdeI | CTNAG | 1 cut(s) | 92 |
| DpnI | GATC | 2 cut(s) | 88, 189 |
| DpnII | GATC | 2 cut(s) | 86, 187 |
| Eco57I | CTGAAG | 1 cut(s) | 117 |
| FaeI | CATG | 1 cut(s) | 188 |
| FaiI | YATR | 3 cut(s) | 149, 186, 217 |
| FatI | CATG | 1 cut(s) | 184 |
| FbaI | TGATCA | 1 cut(s) | 187 |
| FblI | GTMKAC | 1 cut(s) | 148 |
| FokI | GGATG | 1 cut(s) | 185 |
| FspEI | CC | 7 cut(s) | 12, 21, 40, 69, 97, 112, 155 |
| HapII | CCGG | 2 cut(s) | 27, 84 |
| Hin1II | CATG | 1 cut(s) | 188 |
| HindIII | AAGCTT | 1 cut(s) | 74 |
| HpaII | CCGG | 2 cut(s) | 27, 84 |
| Hpy166II | GTNNAC | 1 cut(s) | 149 |
| Hpy8I | GTNNAC | 1 cut(s) | 149 |
| HpyAV | CCTTC | 1 cut(s) | 163 |
| HpyCH4V | TGCA | 3 cut(s) | 65, 143, 215 |
| HpyF3I | CTNAG | 1 cut(s) | 92 |
| Hsp92II | CATG | 1 cut(s) | 188 |
| Ksp22I | TGATCA | 1 cut(s) | 187 |
| Kzo9I | GATC | 2 cut(s) | 86, 187 |
| LmnI | GCTCC | 1 cut(s) | 10 |
| LpnPI | CCDG | 2 cut(s) | 40, 97 |
| LweI | GCATC | 2 cut(s) | 52, 130 |
| MalI | GATC | 2 cut(s) | 88, 189 |
| MboI | GATC | 2 cut(s) | 86, 187 |
| MboII | GAAGA | 2 cut(s) | 15, 191 |
| MflI | RGATCY | 1 cut(s) | 86 |
| MhlI | GDGCHC | 1 cut(s) | 34 |
| MluCI | AATT | 1 cut(s) | 9 |
| MroXI | GAANNNNTTC | 1 cut(s) | 19 |
| MseI | TTAA | 2 cut(s) | 72, 194 |
| MspA1I | CMGCKG | 1 cut(s) | 137 |
| MspI | CCGG | 2 cut(s) | 27, 84 |
| NdeII | GATC | 2 cut(s) | 86, 187 |
| NlaIII | CATG | 1 cut(s) | 188 |
| NlaIV | GGNNCC | 1 cut(s) | 6 |
| PdmI | GAANNNNTTC | 1 cut(s) | 19 |
| PspN4I | GGNNCC | 1 cut(s) | 6 |
| PsuI | RGATCY | 1 cut(s) | 86 |
| PvuII | CAGCTG | 1 cut(s) | 137 |
| RsaI | GTAC | 1 cut(s) | 101 |
| RsaNI | GTAC | 1 cut(s) | 100 |
| SaqAI | TTAA | 2 cut(s) | 72, 194 |
| Sau3AI | GATC | 2 cut(s) | 86, 187 |
| ScaI | AGTACT | 1 cut(s) | 101 |
| SduI | GDGCHC | 1 cut(s) | 34 |
| SetI | ASST | 2 cut(s) | 78, 139 |
| SfaNI | GCATC | 2 cut(s) | 52, 130 |
| SgeI | CNNG | 8 cut(s) | 39, 92, 96, 134, 138, 156, 164, 197 |
| SmlI | CTYRAG | 1 cut(s) | 152 |
| SmoI | CTYRAG | 1 cut(s) | 152 |
| Sse9I | AATT | 1 cut(s) | 9 |
| SspI | AATATT | 1 cut(s) | 20 |
| TasI | AATT | 1 cut(s) | 9 |
| TatI | WGTACW | 1 cut(s) | 99 |
| Tru1I | TTAA | 2 cut(s) | 72, 194 |
| Tru9I | TTAA | 2 cut(s) | 72, 194 |
| TspGWI | ACGGA | 1 cut(s) | 142 |
| XmiI | GTMKAC | 1 cut(s) | 148 |
| XmnI | GAANNNNTTC | 1 cut(s) | 19 |
| ZrmI | AGTACT | 1 cut(s) | 101 |