Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0017008

Physical Location & Seq

Genomic Coordinates Forward (+)

25449286 .. 25451632

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG117100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGTCCTCTTCGAAATTGGAGTCGGAATTGGGAGCCCGTAGCCGTCCTCCTCCTCGTCTATCGCCTACGTCGTCGCTTTGTGGCCGGAACTCCGGAATAGTGGAGTTCGATCGAGGGCTCAAGGAAGAGAGGCCGAGACGGAGTAGCCGAGTAGGGACTAGGGAGAGTGGAGAATTCCAAAATCCCAAATTCTCCCATCTCAAATCTAACAGATTTGGGAATTGGCAAGAGCCAAGAAGGATTTTTGAGTCTAACACAACAATTTCGTTGGGTTATAATATCATGGCTCCAATTAGAAAATATTCTTCCGGTGCTCAAAAGAGAAAAGAGAAGCAAAAGAGAGATGAATTAGTTAAGCTTCAAGCCGGATCTCTTAGTAAGTACTTCAACACAAATAATAAACAAGCACAGACTTCAGCTGATGCAAGTATACTTGAGAATGAGAATGAGAAGGATGTTAAAGAACATGATCAGTTAATGACTGAAAATGAGAGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006355 GO:0006357 GO:0006996 GO:0007010 GO:0007275 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FCS

Protein Analysis

166

Amino Acids

18.87

Weight (kDa)

9.74

Isoelectric Point (pI)

55.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017008)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0080901 RchiOBHm_Chr6g0263321
rosa_multiflora	Rmu_sc0004961.1_g000020
rosa_roxburghii	Rroxscaffold_1G00046640 Rroxscaffold_4G00295330 Rroxscaffold_5G00335240 Rroxscaffold_7G00185610
rosa_samantha	Rh1BG163700 Rh1CG117100 Rh2CG360100 Rh4BG172900 Rh5DG247700 Rh7AG117800 Rh7BG240600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
AccI	GTMKAC	1 cut(s)	430
AccIII	TCCGGA	1 cut(s)	92
AclWI	GGATC	1 cut(s)	376
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	2 cut(s)	173, 188
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	362, 388
AluBI	AGCT	2 cut(s)	358, 419
AluI	AGCT	2 cut(s)	358, 419
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	1 cut(s)	376
Aor13HI	TCCGGA	1 cut(s)	92
AoxI	GGCC	2 cut(s)	82, 131
ApoI	RAATTY	2 cut(s)	173, 188
ArsI	GACNNNNNNTTYG	1 cut(s)	37
Asp700I	GAANNNNTTC	1 cut(s)	301
AsuII	TTCGAA	1 cut(s)	11
BanII	GRGCYC	2 cut(s)	37, 120
Bbv12I	GWGCWC	1 cut(s)	316
BccI	CCATC	1 cut(s)	204
BceAI	ACGGC	1 cut(s)	27
BclI	TGATCA	1 cut(s)	469
BcoDI	GTCTC	1 cut(s)	130
BfaI	CTAG	1 cut(s)	159
BmcAI	AGTACT	1 cut(s)	383
BmiI	GGNNCC	2 cut(s)	34, 288
BmsI	GCATC	1 cut(s)	412
Bpu14I	TTCGAA	1 cut(s)	11
BpuEI	CTTGAG	2 cut(s)	104, 455
BsaWI	WCCGGW	2 cut(s)	92, 308
BseAI	TCCGGA	1 cut(s)	92
BseGI	GGATG	1 cut(s)	460
BseRI	GAGGAG	2 cut(s)	39, 42
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	84, 133
BsiEI	CGRYCG	1 cut(s)	112
BsiHKAI	GWGCWC	1 cut(s)	316
BsiSI	CCGG	4 cut(s)	85, 93, 309, 366
BslFI	GGGAC	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	130
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	169
BsnI	GGCC	2 cut(s)	84, 133
Bsp119I	TTCGAA	1 cut(s)	11
Bsp1286I	GDGCHC	3 cut(s)	37, 120, 316
Bsp13I	TCCGGA	1 cut(s)	92
Bsp143I	GATC	3 cut(s)	109, 368, 469
BspANI	GGCC	2 cut(s)	84, 133
BspEI	TCCGGA	1 cut(s)	92
BspLI	GGNNCC	2 cut(s)	34, 288
BspPI	GGATC	1 cut(s)	376
BspT104I	TTCGAA	1 cut(s)	11
BssMI	GATC	3 cut(s)	109, 368, 469
BssNAI	GTATAC	1 cut(s)	431
Bst1107I	GTATAC	1 cut(s)	431
Bst6I	CTCTTC	2 cut(s)	13, 120
BstBI	TTCGAA	1 cut(s)	11
BstDEI	CTNAG	1 cut(s)	374
BstF5I	GGATG	1 cut(s)	460
BstKTI	GATC	3 cut(s)	112, 371, 472
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	3 cut(s)	109, 368, 469
BstMCI	CGRYCG	1 cut(s)	112
BstX2I	RGATCY	1 cut(s)	368
BstYI	RGATCY	1 cut(s)	368
BstZ17I	GTATAC	1 cut(s)	431
BsuRI	GGCC	2 cut(s)	84, 133
BtsCI	GGATG	1 cut(s)	460
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	2 cut(s)	283, 467
CviQI	GTAC	1 cut(s)	382
DdeI	CTNAG	1 cut(s)	374
DpnI	GATC	3 cut(s)	111, 370, 471
DpnII	GATC	3 cut(s)	109, 368, 469
EaeI	YGGCCR	1 cut(s)	82
Eam1104I	CTCTTC	2 cut(s)	13, 120
EarI	CTCTTC	2 cut(s)	13, 120
Eco24I	GRGCYC	2 cut(s)	37, 120
Eco57I	CTGAAG	1 cut(s)	399
EcoRI	GAATTC	1 cut(s)	173
EcoT38I	GRGCYC	2 cut(s)	37, 120
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	2 cut(s)	286, 470
FaiI	YATR	5 cut(s)	276, 284, 431, 468, 499
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	2 cut(s)	282, 466
FbaI	TGATCA	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	430
FokI	GGATG	1 cut(s)	467
FriOI	GRGCYC	2 cut(s)	37, 120
FspBI	CTAG	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	84, 133
HapII	CCGG	4 cut(s)	85, 93, 309, 366
Hin1II	CATG	2 cut(s)	286, 470
HindIII	AAGCTT	1 cut(s)	356
HinfI	GANTC	2 cut(s)	20, 248
HpaII	CCGG	4 cut(s)	85, 93, 309, 366
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	1 cut(s)	93
Hpy8I	GTNNAC	1 cut(s)	431
Hpy99I	CGWCG	2 cut(s)	73, 76
HpyAV	CCTTC	2 cut(s)	231, 445
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	2 cut(s)	425, 497
HpyF3I	CTNAG	1 cut(s)	374
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	2 cut(s)	286, 470
Kpn2I	TCCGGA	1 cut(s)	92
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	3 cut(s)	109, 368, 469
LmnI	GCTCC	2 cut(s)	32, 292
LpnPI	CCDG	4 cut(s)	98, 106, 322, 379
LweI	GCATC	1 cut(s)	412
MaeI	CTAG	1 cut(s)	159
MaeII	ACGT	1 cut(s)	68
MalI	GATC	3 cut(s)	111, 370, 471
MboI	GATC	3 cut(s)	109, 368, 469
MboII	GAAGA	2 cut(s)	137, 297
MflI	RGATCY	1 cut(s)	368
MhlI	GDGCHC	3 cut(s)	37, 120, 316
MluCI	AATT	8 cut(s)	14, 26, 173, 188, 220, 261, 291, 347
MlyI	GAGTC	2 cut(s)	29, 257
MnlI	CCTC	6 cut(s)	16, 57, 60, 63, 107, 123
MroI	TCCGGA	1 cut(s)	92
MroXI	GAANNNNTTC	1 cut(s)	301
MseI	TTAA	3 cut(s)	354, 459, 476
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	4 cut(s)	85, 93, 309, 366
NdeII	GATC	3 cut(s)	109, 368, 469
NlaIII	CATG	2 cut(s)	286, 470
NlaIV	GGNNCC	2 cut(s)	34, 288
NmeAIII	GCCGAG	2 cut(s)	159, 173
NspV	TTCGAA	1 cut(s)	11
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 145
PdmI	GAANNNNTTC	1 cut(s)	301
Ple19I	CGATCG	1 cut(s)	112
PleI	GAGTC	2 cut(s)	28, 256
PpsI	GAGTC	2 cut(s)	28, 256
PsiI	TTATAA	1 cut(s)	276
PspN4I	GGNNCC	2 cut(s)	34, 288
PsuI	RGATCY	1 cut(s)	368
PvuI	CGATCG	1 cut(s)	112
PvuII	CAGCTG	1 cut(s)	419
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SaqAI	TTAA	3 cut(s)	354, 459, 476
Sau3AI	GATC	3 cut(s)	109, 368, 469
ScaI	AGTACT	1 cut(s)	383
SchI	GAGTC	2 cut(s)	29, 257
SduI	GDGCHC	3 cut(s)	37, 120, 316
SetI	ASST	3 cut(s)	71, 360, 421
SfaNI	GCATC	1 cut(s)	412
SfuI	TTCGAA	1 cut(s)	11
SmlI	CTYRAG	2 cut(s)	119, 434
SmoI	CTYRAG	2 cut(s)	119, 434
Sse9I	AATT	8 cut(s)	14, 26, 173, 188, 220, 261, 291, 347
SspI	AATATT	1 cut(s)	302
SspMI	CTAG	1 cut(s)	159
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	3 cut(s)	11, 108, 112
TasI	AATT	8 cut(s)	14, 26, 173, 188, 220, 261, 291, 347
TatI	WGTACW	1 cut(s)	381
Tru1I	TTAA	3 cut(s)	354, 459, 476
Tru9I	TTAA	3 cut(s)	354, 459, 476
TspDTI	ATGAA	1 cut(s)	360
TspGWI	ACGGA	1 cut(s)	154
XapI	RAATTY	2 cut(s)	173, 188
XmiI	GTMKAC	1 cut(s)	430
XmnI	GAANNNNTTC	1 cut(s)	301
XspI	CTAG	1 cut(s)	159
ZrmI	AGTACT	1 cut(s)	383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.