RchiOBHm_Chr6g0265991

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004350
Physical Location & Seq
Reverse (-)
22018883 .. 22021167
2285 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23854

Sequence Viewer

Length: 1164 bp
ATGACGACGAATGTGGATTACCGCAGAAAGTTACTAGCACTTAAGGAACTGGAAGCTAAAGTAAAGCAAGCACGAGACGAATTGCGGTCCAGAAAGAAGGAATATGAGAAAACCGAAGATGATTTGAAGTCCTTCCAAAGTTCAGGACAGATTGTAGGCGAAGTTCTGTCGCAGCTCGATGATGGACGGGTGTTAGTGAAGGCAAGTAGTGGCCCTCGGTATGTGGTAGGCTGTCGCAGTAAAATCCCCAGAGAAAAACTTACATCGGGCACTCGCGTAGTTTTGGATATCACTACTTTGACCATCATGAGGCCTCTTCCAAGAGAAGTTGATCCAGTTGTGTATAATATGCTTCAAGAAGATCCAGGTAATGTTAGCTACTCTGCTGTGGGAGGCCTATCCGATCAGATACGAGATCTTAGGGAATCTATAGAACTGCCTTTGATGAATCCTGAGCTCTTCCTTAGAGTGGGGATCAAACCTCCCAAGGGTGTTCTTCTCTACGGACCTCCGGGAACAGGAAAGACATTACTGGCTAGAGCAATTGCCAGCAATATAGATGCTAATTTTTTGAAGGTTGTATCAAGCGCAATTGTTGATAAATACATTGGCGAGAGTGCGAGAATGATAAGGGAAATGTTTAATTACGCTCGTGATCACCAGCCGTGTATCATTTTTATGGACGAGATCGATGCTATTGGTGGAGCACGTTTGAGTGAGGGGACCAGTTCAGACAGAGAAGTGCAGCGAACACTCATGGAGTTGCTTAACCAGTTAGACGGTTTTGATCAGCTTGACAAGGTTAAAATCATAATGGCAACCAATAGACCTGATACTTTAGATTCTGCACTCCTGCGCCCTGGGCGTCTAGACCGAAAGATAGAGATTCCATTGCCTAATGAACAGTCGAGAATGGAAATTCTTAAAATCCATGCTGCTGGGATAGCCAAGCACGGGGAAATTGATTATGAGGCAATTGTCAGGCTTGCTGAGGGCTTTAATGGGGCTGATCTACGGAACATATGTACTGAAGCTGGAATGTTTGCCATACGTGCTGAACGGGATTATGTTGTTCAAGAAGATTTCATGAAGGCTGTCAGAAAATTGAACGATGCCAAGAAGCTGGAGTCCAGGGCTCACTACAATTTTGGGAAAGAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

387

Amino Acids

43.48

Weight (kDa)

7.65

Isoelectric Point (pI)

30.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 52 - 107 7.4e-13 Proteasomal ATPase OB C-terminal domain
RuvB_N PF05496 164 - 231 9.7e-06 Holliday junction DNA helicase RuvB P-loop domain
AAA PF00004 165 - 298 6.3e-45 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 321 - 364 3.3e-13 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 276
AciI CCGC 2 cut(s) 22, 85
AclWI GGATC 3 cut(s) 326, 356, 482
AcsI RAATTY 1 cut(s) 918
AcuI CTGAAG 1 cut(s) 1050
AcyI GRCGYC 1 cut(s) 865
AfaI GTAC 1 cut(s) 1027
AfiI CCNNNNNNNGG 5 cut(s) 309, 469, 488, 518, 954
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 5 cut(s) 127, 356, 574, 1076, 1108
AjnI CCWGG 3 cut(s) 364, 859, 1130
AluBI AGCT 7 cut(s) 56, 175, 378, 457, 793, 1034, 1123
AluI AGCT 7 cut(s) 56, 175, 378, 457, 793, 1034, 1123
Alw21I GWGCWC 2 cut(s) 459, 709
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 3 cut(s) 326, 356, 482
AoxI GGCC 3 cut(s) 211, 311, 394
ApeKI GCWGC 3 cut(s) 172, 745, 935
ApoI RAATTY 1 cut(s) 918
Asp700I GAANNNNTTC 1 cut(s) 131
AspLEI GCGC 2 cut(s) 590, 858
AspS9I GGNCC 4 cut(s) 87, 212, 506, 723
AsuC2I CCSGG 1 cut(s) 513
AsuHPI GGTGA 1 cut(s) 650
AvaII GGWCC 3 cut(s) 87, 506, 723
BaeGI GKGCMC 1 cut(s) 272
BanII GRGCYC 2 cut(s) 459, 1138
BauI CACGAG 2 cut(s) 72, 651
Bbv12I GWGCWC 2 cut(s) 459, 709
BbvCI CCTCAGC 1 cut(s) 990
BbvI GCAGC 3 cut(s) 184, 757, 922
BccI CCATC 2 cut(s) 176, 311
BceAI ACGGC 1 cut(s) 649
BcgI CGANNNNNNTGC 2 cut(s) 674, 708
BciT130I CCWGG 3 cut(s) 366, 861, 1132
BclI TGATCA 2 cut(s) 655, 787
BcnI CCSGG 1 cut(s) 513
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 3 cut(s) 35, 537, 869
BfmI CTRYAG 1 cut(s) 429
BfrI CTTAAG 1 cut(s) 41
BglII AGATCT 1 cut(s) 415
BisI GCNGC 3 cut(s) 173, 746, 936
BlsI GCNGC 3 cut(s) 174, 747, 937
Bme1390I CCNGG 4 cut(s) 366, 513, 861, 1132
Bme18I GGWCC 3 cut(s) 87, 506, 723
BmgT120I GGNCC 4 cut(s) 87, 212, 506, 723
BmiI GGNNCC 1 cut(s) 724
BmrFI CCNGG 4 cut(s) 366, 513, 861, 1132
BmsI GCATC 3 cut(s) 550, 682, 1102
BpmI CTGGAG 1 cut(s) 1145
Bpu10I CCTNAGC 2 cut(s) 453, 990
BpuMI CCSGG 1 cut(s) 513
Bsa29I ATCGAT 1 cut(s) 690
BsaAI YACGTR 1 cut(s) 1052
BsaHI GRCGYC 1 cut(s) 865
BsaJI CCNNGG 5 cut(s) 215, 486, 859, 860, 1131
Bsc4I CCNNNNNNNGG 5 cut(s) 309, 469, 488, 518, 954
Bse1I ACTGG 5 cut(s) 54, 335, 537, 726, 772
Bse3DI GCAATG 1 cut(s) 890
BseBI CCWGG 3 cut(s) 366, 861, 1132
BseCI ATCGAT 1 cut(s) 690
BseDI CCNNGG 5 cut(s) 215, 486, 859, 860, 1131
BseLI CCNNNNNNNGG 5 cut(s) 309, 469, 488, 518, 954
BseMI GCAATG 1 cut(s) 890
BseMII CTCAG 2 cut(s) 444, 981
BseNI ACTGG 5 cut(s) 54, 335, 537, 726, 772
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 3 cut(s) 184, 757, 922
BseYI CCCAGC 1 cut(s) 938
BsgI GTGCAG 2 cut(s) 764, 831
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 3 cut(s) 213, 313, 396
BshVI ATCGAT 1 cut(s) 690
BsiHKAI GWGCWC 2 cut(s) 459, 709
BsiSI CCGG 1 cut(s) 512
BslFI GGGAC 1 cut(s) 736
BslI CCNNNNNNNGG 5 cut(s) 309, 469, 488, 518, 954
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 736
BsnI GGCC 3 cut(s) 213, 313, 396
Bsp1286I GDGCHC 4 cut(s) 272, 459, 709, 1138
Bsp143I GATC 9 cut(s) 331, 361, 403, 415, 474, 655, 687, 787, 1009
BspACI CCGC 2 cut(s) 22, 85
BspANI GGCC 3 cut(s) 213, 313, 396
BspCNI CTCAG 2 cut(s) 445, 982
BspDI ATCGAT 1 cut(s) 690
BspFNI CGCG 1 cut(s) 276
BspHI TCATGA 2 cut(s) 306, 1086
BspLI GGNNCC 1 cut(s) 724
BspPI GGATC 3 cut(s) 326, 356, 482
BspQI GCTCTTC 1 cut(s) 464
BspTI CTTAAG 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 890
BsrI ACTGG 5 cut(s) 54, 335, 537, 726, 772
BssECI CCNNGG 5 cut(s) 215, 486, 859, 860, 1131
BssMI GATC 9 cut(s) 331, 361, 403, 415, 474, 655, 687, 787, 1009
BssNI GRCGYC 1 cut(s) 865
BssSI CACGAG 2 cut(s) 72, 651
BssT1I CCWWGG 1 cut(s) 486
Bst2BI CACGAG 2 cut(s) 72, 651
Bst2UI CCWGG 3 cut(s) 366, 861, 1132
Bst4CI ACNGT 3 cut(s) 782, 906, 1161
Bst6I CTCTTC 2 cut(s) 321, 464
BstACI GRCGYC 1 cut(s) 865
BstAFI CTTAAG 1 cut(s) 41
BstBAI YACGTR 1 cut(s) 1052
BstC8I GCNNGC 3 cut(s) 69, 550, 987
BstDEI CTNAG 4 cut(s) 419, 453, 464, 990
BstFNI CGCG 1 cut(s) 276
BstHHI GCGC 2 cut(s) 590, 858
BstKTI GATC 9 cut(s) 334, 364, 406, 418, 477, 658, 690, 790, 1012
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 9 cut(s) 331, 361, 403, 415, 474, 655, 687, 787, 1009
BstMWI GCNNNNNNNGC 3 cut(s) 862, 944, 1052
BstNI CCWGG 3 cut(s) 366, 861, 1132
BstSCI CCNGG 4 cut(s) 364, 511, 859, 1130
BstSFI CTRYAG 1 cut(s) 429
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 3 cut(s) 184, 757, 922
BstX2I RGATCY 2 cut(s) 361, 415
BstXI CCANNNNNNTGG 2 cut(s) 938, 1123
BstYI RGATCY 2 cut(s) 361, 415
Bsu15I ATCGAT 1 cut(s) 690
BsuRI GGCC 3 cut(s) 213, 313, 396
BsuTUI ATCGAT 1 cut(s) 690
Cac8I GCNNGC 3 cut(s) 69, 550, 987
CciI TCATGA 2 cut(s) 306, 1086
CfoI GCGC 2 cut(s) 590, 858
Cfr13I GGNCC 4 cut(s) 87, 212, 506, 723
ClaI ATCGAT 1 cut(s) 690
CseI GACGC 1 cut(s) 854
Csp6I GTAC 1 cut(s) 1026
CviAII CATG 4 cut(s) 307, 757, 932, 1087
CviQI GTAC 1 cut(s) 1026
DdeI CTNAG 4 cut(s) 419, 453, 464, 990
DpnI GATC 9 cut(s) 333, 363, 405, 417, 476, 657, 689, 789, 1011
DpnII GATC 9 cut(s) 331, 361, 403, 415, 474, 655, 687, 787, 1009
Eam1104I CTCTTC 2 cut(s) 321, 464
EarI CTCTTC 2 cut(s) 321, 464
Ecl136II GAGCTC 1 cut(s) 457
Eco130I CCWWGG 1 cut(s) 486
Eco147I AGGCCT 2 cut(s) 313, 396
Eco24I GRGCYC 2 cut(s) 459, 1138
Eco32I GATATC 1 cut(s) 289
Eco47I GGWCC 3 cut(s) 87, 506, 723
Eco53kI GAGCTC 1 cut(s) 457
Eco57I CTGAAG 1 cut(s) 1050
EcoICRI GAGCTC 1 cut(s) 457
EcoRII CCWGG 3 cut(s) 364, 859, 1130
EcoRV GATATC 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 486
EcoT38I GRGCYC 2 cut(s) 459, 1138
ErhI CCWWGG 1 cut(s) 486
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 4 cut(s) 310, 760, 935, 1090
FaqI GGGAC 1 cut(s) 736
FatI CATG 4 cut(s) 306, 756, 931, 1086
FauNDI CATATG 1 cut(s) 1022
FbaI TGATCA 2 cut(s) 655, 787
Fnu4HI GCNGC 3 cut(s) 173, 746, 936
FriOI GRGCYC 2 cut(s) 459, 1138
Fsp4HI GCNGC 3 cut(s) 173, 746, 936
FspBI CTAG 3 cut(s) 35, 537, 869
GlaI GCGC 2 cut(s) 589, 857
GluI GCNGC 3 cut(s) 173, 746, 936
GsaI CCCAGC 1 cut(s) 942
GsuI CTGGAG 1 cut(s) 1145
HaeIII GGCC 3 cut(s) 213, 313, 396
HapII CCGG 1 cut(s) 512
HgaI GACGC 1 cut(s) 854
HhaI GCGC 2 cut(s) 590, 858
Hin1I GRCGYC 1 cut(s) 865
Hin1II CATG 4 cut(s) 310, 760, 935, 1090
Hin6I GCGC 2 cut(s) 588, 856
HinP1I GCGC 2 cut(s) 588, 856
HinfI GANTC 5 cut(s) 425, 448, 842, 886, 1127
HpaII CCGG 1 cut(s) 512
HphI GGTGA 1 cut(s) 650
Hpy188I TCNGA 4 cut(s) 403, 408, 733, 1100
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 5 cut(s) 91, 142, 193, 568, 1084
HpyCH4III ACNGT 3 cut(s) 782, 906, 1161
HpyCH4IV ACGT 2 cut(s) 709, 1051
HpyCH4V TGCA 2 cut(s) 745, 848
HpyF10VI GCNNNNNNNGC 3 cut(s) 862, 944, 1052
HpyF3I CTNAG 4 cut(s) 419, 453, 464, 990
HpySE526I ACGT 2 cut(s) 709, 1051
Hsp92I GRCGYC 1 cut(s) 865
Hsp92II CATG 4 cut(s) 310, 760, 935, 1090
HspAI GCGC 2 cut(s) 588, 856
Ksp22I TGATCA 2 cut(s) 655, 787
Kzo9I GATC 9 cut(s) 331, 361, 403, 415, 474, 655, 687, 787, 1009
LguI GCTCTTC 1 cut(s) 464
LmnI GCTCC 1 cut(s) 704
Lsp1109I GCAGC 3 cut(s) 184, 757, 922
LweI GCATC 3 cut(s) 550, 682, 1102
MaeI CTAG 3 cut(s) 35, 537, 869
MaeII ACGT 2 cut(s) 709, 1051
MaeIII GTNAC 1 cut(s) 30
MalI GATC 9 cut(s) 333, 363, 405, 417, 476, 657, 689, 789, 1011
MboI GATC 9 cut(s) 331, 361, 403, 415, 474, 655, 687, 787, 1009
MboII GAAGA 6 cut(s) 128, 308, 371, 451, 488, 1091
MfeI CAATTG 3 cut(s) 543, 591, 975
MflI RGATCY 2 cut(s) 361, 415
MhlI GDGCHC 4 cut(s) 272, 459, 709, 1138
MlyI GAGTC 1 cut(s) 1136
MnlI CCTC 9 cut(s) 225, 303, 324, 386, 492, 519, 712, 964, 985
MroXI GAANNNNTTC 1 cut(s) 131
MseI TTAA 6 cut(s) 42, 642, 768, 804, 924, 999
MslI CAYNNNNRTG 1 cut(s) 677
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 1 cut(s) 512
MspR9I CCNGG 4 cut(s) 366, 513, 861, 1132
MunI CAATTG 3 cut(s) 543, 591, 975
MvaI CCWGG 3 cut(s) 366, 861, 1132
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 862, 944, 1052
NciI CCSGG 1 cut(s) 513
NdeI CATATG 1 cut(s) 1022
NdeII GATC 9 cut(s) 331, 361, 403, 415, 474, 655, 687, 787, 1009
NlaIII CATG 4 cut(s) 310, 760, 935, 1090
NlaIV GGNNCC 1 cut(s) 724
PagI TCATGA 2 cut(s) 306, 1086
PasI CCCWGGG 1 cut(s) 860
PceI AGGCCT 2 cut(s) 313, 396
PciSI GCTCTTC 1 cut(s) 464
PdmI GAANNNNTTC 1 cut(s) 131
PfeI GAWTC 4 cut(s) 425, 448, 842, 886
PfoI TCCNGGA 1 cut(s) 511
PkrI GCNGC 3 cut(s) 174, 747, 937
PleI GAGTC 1 cut(s) 1135
PpsI GAGTC 1 cut(s) 1135
Ppu21I YACGTR 1 cut(s) 1052
Psp124BI GAGCTC 1 cut(s) 459
Psp6I CCWGG 3 cut(s) 364, 859, 1130
PspFI CCCAGC 1 cut(s) 938
PspGI CCWGG 3 cut(s) 364, 859, 1130
PspN4I GGNNCC 1 cut(s) 724
PspPI GGNCC 4 cut(s) 87, 212, 506, 723
PsrI GAACNNNNNNTAC 2 cut(s) 147, 179
PsuI RGATCY 2 cut(s) 361, 415
RsaI GTAC 1 cut(s) 1027
RsaNI GTAC 1 cut(s) 1026
RseI CAYNNNNRTG 1 cut(s) 677
SacI GAGCTC 1 cut(s) 459
SapI GCTCTTC 1 cut(s) 464
SaqAI TTAA 6 cut(s) 42, 642, 768, 804, 924, 999
SatI GCNGC 3 cut(s) 173, 746, 936
Sau3AI GATC 9 cut(s) 331, 361, 403, 415, 474, 655, 687, 787, 1009
Sau96I GGNCC 4 cut(s) 87, 212, 506, 723
SchI GAGTC 1 cut(s) 1136
ScrFI CCNGG 4 cut(s) 366, 513, 861, 1132
SduI GDGCHC 4 cut(s) 272, 459, 709, 1138
SfaNI GCATC 3 cut(s) 550, 682, 1102
SfcI CTRYAG 1 cut(s) 429
SinI GGWCC 3 cut(s) 87, 506, 723
SmiMI CAYNNNNRTG 1 cut(s) 677
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
SseBI AGGCCT 2 cut(s) 313, 396
SsiI CCGC 2 cut(s) 22, 85
SspMI CTAG 3 cut(s) 35, 537, 869
SstI GAGCTC 1 cut(s) 459
StuI AGGCCT 2 cut(s) 313, 396
StyD4I CCNGG 4 cut(s) 364, 511, 859, 1130
StyI CCWWGG 1 cut(s) 486
TaaI ACNGT 3 cut(s) 782, 906, 1161
TaiI ACGT 2 cut(s) 712, 1054
TaqI TCGA 3 cut(s) 177, 690, 908
TaqII GACCGA 1 cut(s) 888
TatI WGTACW 1 cut(s) 1025
TfiI GAWTC 4 cut(s) 425, 448, 842, 886
Tru1I TTAA 6 cut(s) 42, 642, 768, 804, 924, 999
Tru9I TTAA 6 cut(s) 42, 642, 768, 804, 924, 999
TseI GCWGC 3 cut(s) 172, 745, 935
TspDTI ATGAA 4 cut(s) 461, 915, 1075, 1103
TspGWI ACGGA 2 cut(s) 519, 1030
Vha464I CTTAAG 1 cut(s) 41
VpaK11BI GGWCC 3 cut(s) 87, 506, 723
XapI RAATTY 1 cut(s) 918
XbaI TCTAGA 1 cut(s) 868
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 3 cut(s) 35, 537, 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.