Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004350

Physical Location & Seq

Genomic Coordinates Reverse (-)

2793448 .. 2798295

Gene Structure 4848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0022200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGACTTTGCAAATTGGGCCGTGCGTTGCAGCTGCTATAGATGAATCAATAAAGGAGGGGCGCTTGAACGTAGTTTGCGAGAGATTGCATTATTCCGTGAGATTGATAAGAAGCAGAGCTCTACGCAACCCTTATTTTCGAGTAGCAGACGTCTTTCACAGACACAGTCAGAAAGATGATACACAGGACAGAGAACAACCCTTGATCAGACCTGATTTGACAAAGAGAGAGAGTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

79

Amino Acids

9.27

Weight (kDa)

9.58

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45000 AT1G45000 AT5G43010
fragaria_vesca	FvH4_2g09670 FvH4_2g09690 FvH4_2g09690
malus_domestica	MD04G1152100.v1.1 MD05G1060900.v1.1 MD10G1068700.v1.1
prunus_persica	Prupe.8G090700_v2.0.a1 Prupe.8G090700_v2.0.a1 Prupe.8G090700_v2.0.a1 Prupe.8G090700_v2.0.a1
pyrus_communis	pycom04g13810 pycom05g05180 pycom10g05480
rosa_chinensis	RchiOBHm_Chr6g0265991 RchiOBHm_Chr6g0266001
rosa_laevigata	RLG00000014139 RLG00000014140
rosa_multiflora	Rmu_sc0020372.1_g000001 Rmu_sc0030533.1_g000001 Rmu_sc0030533.1_g000002
rosa_roxburghii	Rroxscaffold_7G00202150 Rroxscaffold_7G00202160
rosa_rugosa	Rorug06G0022200 Rorug06G0022300
rosa_samantha	Rh6AG143600 Rh6BG143700 Rh6CG140400
rosa_wichuraiana	Rw6G012400 Rw6G012410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	67
AluBI	AGCT	2 cut(s)	32, 119
AluI	AGCT	2 cut(s)	32, 119
Alw21I	GWGCWC	1 cut(s)	121
AoxI	GGCC	1 cut(s)	17
ApeKI	GCWGC	2 cut(s)	29, 32
AspLEI	GCGC	1 cut(s)	63
AspS9I	GGNCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	121
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	19, 41
BceAI	ACGGC	1 cut(s)	4
BclI	TGATCA	1 cut(s)	204
BfmI	CTRYAG	1 cut(s)	36
BfoI	RGCGCY	1 cut(s)	64
BisI	GCNGC	2 cut(s)	30, 33
BlsI	GCNGC	2 cut(s)	31, 34
BmgT120I	GGNCC	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	150
BseXI	GCAGC	2 cut(s)	19, 41
BshFI	GGCC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	19
BssMI	GATC	1 cut(s)	204
BssNI	GRCGYC	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	167
BstACI	GRCGYC	1 cut(s)	150
BstH2I	RGCGCY	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstSFI	CTRYAG	1 cut(s)	36
BstV1I	GCAGC	2 cut(s)	19, 41
BsuRI	GGCC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	63
Cfr13I	GGNCC	1 cut(s)	17
CviJI	RGCY	3 cut(s)	19, 32, 119
CviKI_1	RGCY	3 cut(s)	19, 32, 119
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	119
Eco24I	GRGCYC	1 cut(s)	121
Eco53kI	GAGCTC	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	119
EcoT38I	GRGCYC	1 cut(s)	121
FaiI	YATR	1 cut(s)	38
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	2 cut(s)	30, 33
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	30, 33
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	2 cut(s)	30, 33
HaeII	RGCGCY	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	19
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	150
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HinfI	GANTC	2 cut(s)	44, 232
Hpy188I	TCNGA	2 cut(s)	171, 209
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4IV	ACGT	2 cut(s)	69, 150
HpyCH4V	TGCA	3 cut(s)	10, 29, 88
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpySE526I	ACGT	2 cut(s)	69, 150
Hsp92I	GRCGYC	1 cut(s)	150
HspAI	GCGC	1 cut(s)	61
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	204
LpnPI	CCDG	2 cut(s)	170, 225
Lsp1109I	GCAGC	2 cut(s)	19, 41
MaeII	ACGT	2 cut(s)	69, 150
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	1 cut(s)	12
MnlI	CCTC	1 cut(s)	49
MspA1I	CMGCKG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	16
NdeII	GATC	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	1 cut(s)	44
PflFI	GACNNNGTC	1 cut(s)	165
PkrI	GCNGC	2 cut(s)	31, 34
Psp124BI	GAGCTC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	17
PsyI	GACNNNGTC	1 cut(s)	165
PvuII	CAGCTG	1 cut(s)	32
SacI	GAGCTC	1 cut(s)	121
SatI	GCNGC	2 cut(s)	30, 33
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	1 cut(s)	17
SduI	GDGCHC	1 cut(s)	121
SetI	ASST	5 cut(s)	34, 72, 121, 153, 214
SfcI	CTRYAG	1 cut(s)	36
SgeI	CNNG	8 cut(s)	33, 76, 91, 109, 152, 197, 214, 224
Sse9I	AATT	1 cut(s)	12
SstI	GAGCTC	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	167
TaiI	ACGT	2 cut(s)	72, 153
TaqI	TCGA	2 cut(s)	139, 235
TasI	AATT	1 cut(s)	12
TfiI	GAWTC	1 cut(s)	44
TseI	GCWGC	2 cut(s)	29, 32
TspDTI	ATGAA	1 cut(s)	57
TspGWI	ACGGA	1 cut(s)	85
Tth111I	GACNNNGTC	1 cut(s)	165
ZraI	GACGTC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.