Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020372.1

Orthogroup ID

OG0004350

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1147

Gene Structure 1147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020372.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atgacgtcgacagagacagaggacgccgtacgacgtcgcaccgccatcaccgattaccggaagaggctgctccagcacaaggagctcgactcccgagtccgcgcagtgcgggaaaacttgcgaggagctaagaaggagtttgggaaaactgaagatgatttgaagtcgcttcaaagcgttggtcagattataggggaagttctgagacctctcgataatgaacgcttgatagtgaaggcgagtagtggccctaggtatgtggttggctgtcgcagtaaagtggacaaagaaaaactgacagcgggcactcgggttgttttggatatgactactctgactatcatgagggctcttccaagagaggttgatccagtagtgtataatatgcttcatgaagatcccggtaatgttagctactccgctgtgggagggctaggagaccagatccgggagcttagggaatctatagagctgcctctaatgaaccctgagctcttccttagagttggcatcaaaccacccaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03050 ko05169 map03050 map05169

Pfam Domains

Protein Families

AAA

Protein Analysis

175

Amino Acids

19.75

Weight (kDa)

9.4

Isoelectric Point (pI)

39.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G45000 AT1G45000 AT5G43010
fragaria_vesca	FvH4_2g09670 FvH4_2g09690 FvH4_2g09690
malus_domestica	MD04G1152100.v1.1 MD05G1060900.v1.1 MD10G1068700.v1.1
prunus_persica	Prupe.8G090700_v2.0.a1 Prupe.8G090700_v2.0.a1 Prupe.8G090700_v2.0.a1 Prupe.8G090700_v2.0.a1
pyrus_communis	pycom04g13810 pycom05g05180 pycom10g05480
rosa_chinensis	RchiOBHm_Chr6g0265991 RchiOBHm_Chr6g0266001
rosa_laevigata	RLG00000014139 RLG00000014140
rosa_multiflora	Rmu_sc0020372.1_g000001 Rmu_sc0030533.1_g000001 Rmu_sc0030533.1_g000002
rosa_roxburghii	Rroxscaffold_7G00202150 Rroxscaffold_7G00202160
rosa_rugosa	Rorug06G0022200 Rorug06G0022300
rosa_samantha	Rh6AG143600 Rh6BG143700 Rh6CG140400
rosa_wichuraiana	Rw6G012400 Rw6G012410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	95
AatII	GACGTC	2 cut(s)	8, 37
AccI	GTMKAC	1 cut(s)	8
AccII	CGCG	1 cut(s)	102
AciI	CCGC	5 cut(s)	42, 100, 109, 302, 420
AclWI	GGATC	3 cut(s)	362, 392, 439
AcuI	CTGAAG	1 cut(s)	171
AcyI	GRCGYC	3 cut(s)	5, 24, 34
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	3 cut(s)	57, 79, 448
AgsI	TTSAA	2 cut(s)	163, 173
AluBI	AGCT	6 cut(s)	85, 128, 414, 454, 472, 493
AluI	AGCT	6 cut(s)	85, 128, 414, 454, 472, 493
Alw21I	GWGCWC	2 cut(s)	87, 495
Alw26I	GTCTC	3 cut(s)	8, 199, 432
AlwI	GGATC	3 cut(s)	362, 392, 439
Ama87I	CYCGRG	2 cut(s)	93, 309
AoxI	GGCC	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	67, 472
ArsI	GACNNNNNNTTYG	2 cut(s)	166, 198
AspA2I	CCTAGG	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	248
AsuC2I	CCSGG	2 cut(s)	402, 449
AsuHPI	GGTGA	1 cut(s)	40
AvaI	CYCGRG	2 cut(s)	93, 309
AvrII	CCTAGG	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	308
BanII	GRGCYC	3 cut(s)	87, 352, 495
Bbv12I	GWGCWC	2 cut(s)	87, 495
BbvI	GCAGC	2 cut(s)	54, 459
BccI	CCATC	1 cut(s)	53
BceAI	ACGGC	1 cut(s)	11
BcnI	CCSGG	2 cut(s)	402, 449
BcoDI	GTCTC	3 cut(s)	8, 199, 432
BfaI	CTAG	2 cut(s)	252, 434
BfmI	CTRYAG	1 cut(s)	465
BisI	GCNGC	2 cut(s)	68, 473
BlnI	CCTAGG	1 cut(s)	251
BlsI	GCNGC	2 cut(s)	69, 474
Bme1390I	CCNGG	2 cut(s)	402, 449
BmeT110I	CYCGRG	2 cut(s)	93, 309
BmgT120I	GGNCC	1 cut(s)	248
BmrFI	CCNGG	2 cut(s)	402, 449
BmsI	GCATC	1 cut(s)	519
BplI	GAGNNNNNCTC	2 cut(s)	74, 106
BpmI	CTGGAG	1 cut(s)	56
Bpu10I	CCTNAGC	2 cut(s)	455, 489
BpuMI	CCSGG	2 cut(s)	402, 449
BsaHI	GRCGYC	3 cut(s)	5, 24, 34
BsaI	GGTCTC	2 cut(s)	199, 432
BsaJI	CCNNGG	1 cut(s)	251
BsaWI	WCCGGW	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 79, 448
Bse1I	ACTGG	1 cut(s)	371
BseDI	CCNNGG	1 cut(s)	251
BseLI	CCNNNNNNNGG	3 cut(s)	57, 79, 448
BseMII	CTCAG	2 cut(s)	194, 480
BseNI	ACTGG	1 cut(s)	371
BseRI	GAGGAG	1 cut(s)	138
BseSI	GKGCMC	1 cut(s)	308
BseXI	GCAGC	2 cut(s)	54, 459
Bsh1236I	CGCG	1 cut(s)	102
BshFI	GGCC	1 cut(s)	249
BsiHKAI	GWGCWC	2 cut(s)	87, 495
BsiHKCI	CYCGRG	2 cut(s)	93, 309
BsiSI	CCGG	3 cut(s)	58, 402, 448
BsiWI	CGTACG	1 cut(s)	28
BslI	CCNNNNNNNGG	3 cut(s)	57, 79, 448
BsmAI	GTCTC	3 cut(s)	8, 199, 432
BsnI	GGCC	1 cut(s)	249
Bso31I	GGTCTC	2 cut(s)	199, 432
BsoBI	CYCGRG	2 cut(s)	93, 309
Bsp1286I	GDGCHC	4 cut(s)	87, 308, 352, 495
Bsp143I	GATC	3 cut(s)	367, 397, 444
BspACI	CCGC	5 cut(s)	42, 100, 109, 302, 420
BspANI	GGCC	1 cut(s)	249
BspCNI	CTCAG	2 cut(s)	195, 481
BspFNI	CGCG	1 cut(s)	102
BspHI	TCATGA	2 cut(s)	342, 391
BspPI	GGATC	3 cut(s)	362, 392, 439
BspQI	GCTCTTC	2 cut(s)	357, 500
BspTNI	GGTCTC	2 cut(s)	199, 432
BsrI	ACTGG	1 cut(s)	371
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	3 cut(s)	367, 397, 444
BssNI	GRCGYC	3 cut(s)	5, 24, 34
BssT1I	CCWWGG	1 cut(s)	251
Bst6I	CTCTTC	3 cut(s)	56, 357, 500
BstACI	GRCGYC	3 cut(s)	5, 24, 34
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	5 cut(s)	129, 203, 455, 489, 500
BstFNI	CGCG	1 cut(s)	102
BstHHI	GCGC	1 cut(s)	104
BstKTI	GATC	3 cut(s)	370, 400, 447
BstMAI	GTCTC	3 cut(s)	8, 199, 432
BstMBI	GATC	3 cut(s)	367, 397, 444
BstMWI	GCNNNNNNNGC	2 cut(s)	73, 82
BstSCI	CCNGG	2 cut(s)	400, 447
BstSFI	CTRYAG	1 cut(s)	465
BstSLI	GKGCMC	1 cut(s)	308
BstUI	CGCG	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	54, 459
BstX2I	RGATCY	2 cut(s)	397, 444
BstYI	RGATCY	2 cut(s)	397, 444
BsuRI	GGCC	1 cut(s)	249
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	304
CciI	TCATGA	2 cut(s)	342, 391
CfoI	GCGC	1 cut(s)	104
Cfr13I	GGNCC	1 cut(s)	248
CseI	GACGC	1 cut(s)	32
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	2 cut(s)	343, 392
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	5 cut(s)	129, 203, 455, 489, 500
DpnI	GATC	3 cut(s)	369, 399, 446
DpnII	GATC	3 cut(s)	367, 397, 444
DrdI	GACNNNNNNGTC	1 cut(s)	95
DseDI	GACNNNNNNGTC	1 cut(s)	95
Eam1104I	CTCTTC	3 cut(s)	56, 357, 500
EarI	CTCTTC	3 cut(s)	56, 357, 500
Ecl136II	GAGCTC	2 cut(s)	85, 493
Eco130I	CCWWGG	1 cut(s)	251
Eco24I	GRGCYC	3 cut(s)	87, 352, 495
Eco31I	GGTCTC	2 cut(s)	199, 432
Eco53kI	GAGCTC	2 cut(s)	85, 493
Eco57I	CTGAAG	1 cut(s)	171
Eco88I	CYCGRG	2 cut(s)	93, 309
EcoICRI	GAGCTC	2 cut(s)	85, 493
EcoT14I	CCWWGG	1 cut(s)	251
EcoT38I	GRGCYC	3 cut(s)	87, 352, 495
ErhI	CCWWGG	1 cut(s)	251
FaeI	CATG	2 cut(s)	346, 395
FaiI	YATR	8 cut(s)	191, 258, 326, 344, 381, 386, 393, 467
FatI	CATG	2 cut(s)	342, 391
FauI	CCCGC	2 cut(s)	102, 295
FblI	GTMKAC	1 cut(s)	8
Fnu4HI	GCNGC	2 cut(s)	68, 473
FriOI	GRGCYC	3 cut(s)	87, 352, 495
Fsp4HI	GCNGC	2 cut(s)	68, 473
FspBI	CTAG	2 cut(s)	252, 434
GlaI	GCGC	1 cut(s)	103
GluI	GCNGC	2 cut(s)	68, 473
GsuI	CTGGAG	1 cut(s)	56
HaeIII	GGCC	1 cut(s)	249
HapII	CCGG	3 cut(s)	58, 402, 448
HgaI	GACGC	1 cut(s)	32
HhaI	GCGC	1 cut(s)	104
Hin1I	GRCGYC	3 cut(s)	5, 24, 34
Hin1II	CATG	2 cut(s)	346, 395
Hin6I	GCGC	1 cut(s)	102
HinP1I	GCGC	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	3 cut(s)	89, 96, 461
HpaII	CCGG	3 cut(s)	58, 402, 448
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	2 cut(s)	9, 283
Hpy188I	TCNGA	3 cut(s)	186, 204, 336
Hpy188III	TCNNGA	4 cut(s)	93, 212, 343, 392
Hpy8I	GTNNAC	2 cut(s)	9, 283
Hpy99I	CGWCG	3 cut(s)	10, 36, 39
HpyAV	CCTTC	2 cut(s)	127, 229
HpyCH4IV	ACGT	2 cut(s)	5, 34
HpyF10VI	GCNNNNNNNGC	2 cut(s)	73, 82
HpyF3I	CTNAG	5 cut(s)	129, 203, 455, 489, 500
HpySE526I	ACGT	2 cut(s)	5, 34
Hsp92I	GRCGYC	3 cut(s)	5, 24, 34
Hsp92II	CATG	2 cut(s)	346, 395
HspAI	GCGC	1 cut(s)	102
Kzo9I	GATC	3 cut(s)	367, 397, 444
LguI	GCTCTTC	2 cut(s)	357, 500
LmnI	GCTCC	4 cut(s)	75, 82, 125, 451
LpnPI	CCDG	7 cut(s)	71, 86, 384, 415, 455, 461, 501
Lsp1109I	GCAGC	2 cut(s)	54, 459
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	2 cut(s)	252, 434
MaeII	ACGT	2 cut(s)	5, 34
MalI	GATC	3 cut(s)	369, 399, 446
MboI	GATC	3 cut(s)	367, 397, 444
MboII	GAAGA	5 cut(s)	73, 164, 344, 407, 487
MflI	RGATCY	2 cut(s)	397, 444
MhlI	GDGCHC	4 cut(s)	87, 308, 352, 495
MlyI	GAGTC	2 cut(s)	83, 105
MnlI	CCTC	8 cut(s)	13, 57, 116, 219, 339, 355, 422, 486
MspA1I	CMGCKG	2 cut(s)	302, 422
MspI	CCGG	3 cut(s)	58, 402, 448
MspR9I	CCNGG	2 cut(s)	402, 449
MvnI	CGCG	1 cut(s)	102
MwoI	GCNNNNNNNGC	2 cut(s)	73, 82
NciI	CCSGG	2 cut(s)	402, 449
NdeII	GATC	3 cut(s)	367, 397, 444
NlaIII	CATG	2 cut(s)	346, 395
PagI	TCATGA	2 cut(s)	342, 391
PciSI	GCTCTTC	2 cut(s)	357, 500
PfeI	GAWTC	1 cut(s)	461
Pfl23II	CGTACG	1 cut(s)	28
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	2 cut(s)	69, 474
PleI	GAGTC	2 cut(s)	83, 104
PpsI	GAGTC	2 cut(s)	83, 104
Psp124BI	GAGCTC	2 cut(s)	87, 495
PspLI	CGTACG	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	248
PsuI	RGATCY	2 cut(s)	397, 444
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
SacI	GAGCTC	2 cut(s)	87, 495
SalI	GTCGAC	1 cut(s)	7
SapI	GCTCTTC	2 cut(s)	357, 500
SatI	GCNGC	2 cut(s)	68, 473
Sau3AI	GATC	3 cut(s)	367, 397, 444
Sau96I	GGNCC	1 cut(s)	248
SchI	GAGTC	2 cut(s)	83, 105
ScrFI	CCNGG	2 cut(s)	402, 449
SduI	GDGCHC	4 cut(s)	87, 308, 352, 495
SfaNI	GCATC	1 cut(s)	519
SfcI	CTRYAG	1 cut(s)	465
SsiI	CCGC	5 cut(s)	42, 100, 109, 302, 420
SspMI	CTAG	2 cut(s)	252, 434
SstI	GAGCTC	2 cut(s)	87, 495
StyD4I	CCNGG	2 cut(s)	400, 447
StyI	CCWWGG	1 cut(s)	251
TaiI	ACGT	2 cut(s)	8, 37
TaqI	TCGA	3 cut(s)	8, 87, 213
TfiI	GAWTC	1 cut(s)	461
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	2 cut(s)	67, 472
TspDTI	ATGAA	4 cut(s)	234, 380, 408, 497
TspRI	CASTG	1 cut(s)	111
XmaJI	CCTAGG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	8
XspI	CTAG	2 cut(s)	252, 434
ZraI	GACGTC	2 cut(s)	6, 35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.