RLG00000014140

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004350
Physical Location & Seq
Forward (+)
47968943 .. 47971236
2294 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014140

Sequence Viewer

Length: 1077 bp
ATGACGACAAATGTGGATTACCGCAGAAAGTTACTAGCACTTAAGGAACTGGAAGCTAAAGTAAAGCAAGCACGAGACGAATTGCGGTCCAGAAAGAAGGAATATGAGAAAACCGAAGATGATTTGAAGTCCTTCCAAAGTTCAGGACAGATTGTAGGCGAAGTTCTGTCGCAGCTCGATGATGGACGGGTGTTAGTGAAGGCAAGTAGTGGCCCTCGGTATGTGGTAGGCTGTCGCAGTAAAATCCCCAGAGAAAAACTTACATCGGGCACTCGCGTCGTTTTGGATATCACTACTTTGACCATCATGAGGCCTCTTCCAAGAGAAGTTGATCCAGTTGTGTATAATATGCTTCAAGAAGATCCAGGTAATGTTAGCTACTCTGCTGTGGGAGGCCTATCCGATCAGATACGAGATCTTAGGGAATCTATAGAACTGCCTTTGATGAATCCTGAGCTCTTCCTTAGAGTGGGGATCAAACCTCCCAAGGGTGTTCTTCTCTACGGACCTCCGGGAACAGGAAAGACATTACTGGCTAGAGCAATTGCCAGCAATATAGATGCTAATTTTTTGAAGCCGTGTATTATTTTTATGGACGAGATCGATGCTATTGGTGGAGCACGTTTGAGTGAGGGGACCAGTTCAGATAGAGAAGTGCAGAGAACACTCATGGAGTTGCTTAATCAGTTAGACGGATTTGATCAGCTTGGCAAGGTTAAAATCATAATGGCAACCAATAGACCTGATACTTTAGATTCTGCACTCCTGCGCCCCGGGCGTCTAGACCGAAAGATAGAGATTCCATTGCCTAATGAACATTCGAGAATGGAAATTCTTAAAATCCATGCTGCTGGGATAGCCAAGCATGGGGAAATTGATTATGAGGCAATTGTCAGGCTTGCTGAGGGCTTTAATGGGGCTGATCTACGGAACATATGTACTGAAGCTGGAATGTTTGCCATACGTGCTGAACGGGATTATGTTGTTCAAGAAGATTTCATGAAGGCTGTCAGAAAATTAAACGATGCCAAGAAGCTTGAGTCCAGGGCTCACTACAATTTTGGGAAAGAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

359

Amino Acids

40.05

Weight (kDa)

8.26

Isoelectric Point (pI)

28.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 52 - 107 6.6e-13 Proteasomal ATPase OB C-terminal domain
AAA PF00004 165 - 191 1.2e-07 ATPase family associated with various cellular activities (AAA)
AAA PF00004 192 - 269 8.3e-21 ATPase family associated with various cellular activities (AAA)
AAA_lid_3 PF17862 292 - 335 3e-13 AAA+ lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 276
AciI CCGC 2 cut(s) 22, 85
AclWI GGATC 3 cut(s) 326, 356, 482
AcsI RAATTY 1 cut(s) 831
AcuI CTGAAG 1 cut(s) 963
AcyI GRCGYC 1 cut(s) 778
AfaI GTAC 1 cut(s) 940
AfiI CCNNNNNNNGG 5 cut(s) 309, 469, 488, 518, 867
AflII CTTAAG 1 cut(s) 41
AgsI TTSAA 4 cut(s) 127, 356, 574, 989
AjnI CCWGG 2 cut(s) 364, 1043
AluBI AGCT 7 cut(s) 56, 175, 378, 457, 706, 947, 1036
AluI AGCT 7 cut(s) 56, 175, 378, 457, 706, 947, 1036
Alw21I GWGCWC 2 cut(s) 459, 622
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 3 cut(s) 326, 356, 482
Ama87I CYCGRG 1 cut(s) 773
AoxI GGCC 3 cut(s) 211, 311, 394
ApeKI GCWGC 2 cut(s) 172, 848
ApoI RAATTY 1 cut(s) 831
Asp700I GAANNNNTTC 1 cut(s) 131
AspLEI GCGC 1 cut(s) 771
AspS9I GGNCC 4 cut(s) 87, 212, 506, 636
AsuC2I CCSGG 3 cut(s) 513, 774, 775
AvaI CYCGRG 1 cut(s) 773
AvaII GGWCC 3 cut(s) 87, 506, 636
BaeGI GKGCMC 1 cut(s) 272
BanII GRGCYC 2 cut(s) 459, 1051
BauI CACGAG 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 459, 622
BbvCI CCTCAGC 1 cut(s) 903
BbvI GCAGC 2 cut(s) 184, 835
BccI CCATC 2 cut(s) 176, 311
BceAI ACGGC 1 cut(s) 562
BcgI CGANNNNNNTGC 4 cut(s) 259, 293, 587, 621
BciT130I CCWGG 2 cut(s) 366, 1045
BclI TGATCA 1 cut(s) 700
BcnI CCSGG 3 cut(s) 513, 774, 775
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 3 cut(s) 35, 537, 782
BfmI CTRYAG 1 cut(s) 429
BfrI CTTAAG 1 cut(s) 41
BglII AGATCT 1 cut(s) 415
BisI GCNGC 2 cut(s) 173, 849
BlsI GCNGC 2 cut(s) 174, 850
Bme1390I CCNGG 5 cut(s) 366, 513, 774, 775, 1045
Bme18I GGWCC 3 cut(s) 87, 506, 636
BmeT110I CYCGRG 1 cut(s) 773
BmgT120I GGNCC 4 cut(s) 87, 212, 506, 636
BmiI GGNNCC 1 cut(s) 637
BmrFI CCNGG 5 cut(s) 366, 513, 774, 775, 1045
BmsI GCATC 3 cut(s) 550, 595, 1015
Bpu10I CCTNAGC 2 cut(s) 453, 903
BpuEI CTTGAG 1 cut(s) 1058
BpuMI CCSGG 3 cut(s) 513, 774, 775
Bsa29I ATCGAT 1 cut(s) 603
BsaAI YACGTR 1 cut(s) 965
BsaHI GRCGYC 1 cut(s) 778
BsaJI CCNNGG 5 cut(s) 215, 486, 772, 773, 1044
Bsc4I CCNNNNNNNGG 5 cut(s) 309, 469, 488, 518, 867
Bse1I ACTGG 4 cut(s) 54, 335, 537, 639
Bse3DI GCAATG 1 cut(s) 803
BseBI CCWGG 2 cut(s) 366, 1045
BseCI ATCGAT 1 cut(s) 603
BseDI CCNNGG 5 cut(s) 215, 486, 772, 773, 1044
BseLI CCNNNNNNNGG 5 cut(s) 309, 469, 488, 518, 867
BseMI GCAATG 1 cut(s) 803
BseMII CTCAG 2 cut(s) 444, 894
BseNI ACTGG 4 cut(s) 54, 335, 537, 639
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 2 cut(s) 184, 835
BseYI CCCAGC 1 cut(s) 851
BsgI GTGCAG 2 cut(s) 677, 744
Bsh1236I CGCG 1 cut(s) 276
BshFI GGCC 3 cut(s) 213, 313, 396
BshVI ATCGAT 1 cut(s) 603
BsiHKAI GWGCWC 2 cut(s) 459, 622
BsiHKCI CYCGRG 1 cut(s) 773
BsiSI CCGG 2 cut(s) 512, 774
BslFI GGGAC 1 cut(s) 649
BslI CCNNNNNNNGG 5 cut(s) 309, 469, 488, 518, 867
BsmAI GTCTC 1 cut(s) 69
BsmBI CGTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 649
BsnI GGCC 3 cut(s) 213, 313, 396
BsoBI CYCGRG 1 cut(s) 773
Bsp1286I GDGCHC 4 cut(s) 272, 459, 622, 1051
Bsp143I GATC 8 cut(s) 331, 361, 403, 415, 474, 600, 700, 922
BspACI CCGC 2 cut(s) 22, 85
BspANI GGCC 3 cut(s) 213, 313, 396
BspCNI CTCAG 2 cut(s) 445, 895
BspDI ATCGAT 1 cut(s) 603
BspFNI CGCG 1 cut(s) 276
BspHI TCATGA 2 cut(s) 306, 999
BspLI GGNNCC 1 cut(s) 637
BspPI GGATC 3 cut(s) 326, 356, 482
BspQI GCTCTTC 1 cut(s) 464
BspTI CTTAAG 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 803
BsrI ACTGG 4 cut(s) 54, 335, 537, 639
BssECI CCNNGG 5 cut(s) 215, 486, 772, 773, 1044
BssMI GATC 8 cut(s) 331, 361, 403, 415, 474, 600, 700, 922
BssNI GRCGYC 1 cut(s) 778
BssSI CACGAG 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 486
Bst2BI CACGAG 1 cut(s) 72
Bst2UI CCWGG 2 cut(s) 366, 1045
Bst6I CTCTTC 2 cut(s) 321, 464
BstACI GRCGYC 1 cut(s) 778
BstAFI CTTAAG 1 cut(s) 41
BstBAI YACGTR 1 cut(s) 965
BstC8I GCNNGC 3 cut(s) 69, 550, 900
BstDEI CTNAG 4 cut(s) 419, 453, 464, 903
BstFNI CGCG 1 cut(s) 276
BstHHI GCGC 1 cut(s) 771
BstKTI GATC 8 cut(s) 334, 364, 406, 418, 477, 603, 703, 925
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 8 cut(s) 331, 361, 403, 415, 474, 600, 700, 922
BstMWI GCNNNNNNNGC 3 cut(s) 775, 857, 965
BstNI CCWGG 2 cut(s) 366, 1045
BstSCI CCNGG 5 cut(s) 364, 511, 772, 773, 1043
BstSFI CTRYAG 1 cut(s) 429
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 1 cut(s) 276
BstV1I GCAGC 2 cut(s) 184, 835
BstX2I RGATCY 2 cut(s) 361, 415
BstXI CCANNNNNNTGG 1 cut(s) 851
BstYI RGATCY 2 cut(s) 361, 415
Bsu15I ATCGAT 1 cut(s) 603
BsuRI GGCC 3 cut(s) 213, 313, 396
BsuTUI ATCGAT 1 cut(s) 603
Cac8I GCNNGC 3 cut(s) 69, 550, 900
CciI TCATGA 2 cut(s) 306, 999
CfoI GCGC 1 cut(s) 771
Cfr13I GGNCC 4 cut(s) 87, 212, 506, 636
Cfr9I CCCGGG 1 cut(s) 773
ClaI ATCGAT 1 cut(s) 603
CseI GACGC 2 cut(s) 265, 767
Csp6I GTAC 1 cut(s) 939
CviAII CATG 5 cut(s) 307, 670, 845, 866, 1000
CviQI GTAC 1 cut(s) 939
DdeI CTNAG 4 cut(s) 419, 453, 464, 903
DpnI GATC 8 cut(s) 333, 363, 405, 417, 476, 602, 702, 924
DpnII GATC 8 cut(s) 331, 361, 403, 415, 474, 600, 700, 922
Eam1104I CTCTTC 2 cut(s) 321, 464
EarI CTCTTC 2 cut(s) 321, 464
Ecl136II GAGCTC 1 cut(s) 457
Eco130I CCWWGG 1 cut(s) 486
Eco147I AGGCCT 2 cut(s) 313, 396
Eco24I GRGCYC 2 cut(s) 459, 1051
Eco32I GATATC 1 cut(s) 289
Eco47I GGWCC 3 cut(s) 87, 506, 636
Eco53kI GAGCTC 1 cut(s) 457
Eco57I CTGAAG 1 cut(s) 963
Eco88I CYCGRG 1 cut(s) 773
EcoICRI GAGCTC 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 364, 1043
EcoRV GATATC 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 486
EcoT38I GRGCYC 2 cut(s) 459, 1051
ErhI CCWWGG 1 cut(s) 486
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 5 cut(s) 310, 673, 848, 869, 1003
FaqI GGGAC 1 cut(s) 649
FatI CATG 5 cut(s) 306, 669, 844, 865, 999
FauNDI CATATG 1 cut(s) 935
FbaI TGATCA 1 cut(s) 700
Fnu4HI GCNGC 2 cut(s) 173, 849
FriOI GRGCYC 2 cut(s) 459, 1051
Fsp4HI GCNGC 2 cut(s) 173, 849
FspBI CTAG 3 cut(s) 35, 537, 782
GlaI GCGC 1 cut(s) 770
GluI GCNGC 2 cut(s) 173, 849
GsaI CCCAGC 1 cut(s) 855
HaeIII GGCC 3 cut(s) 213, 313, 396
HapII CCGG 2 cut(s) 512, 774
HgaI GACGC 2 cut(s) 265, 767
HhaI GCGC 1 cut(s) 771
Hin1I GRCGYC 1 cut(s) 778
Hin1II CATG 5 cut(s) 310, 673, 848, 869, 1003
Hin6I GCGC 1 cut(s) 769
HinP1I GCGC 1 cut(s) 769
HindIII AAGCTT 1 cut(s) 1034
HinfI GANTC 5 cut(s) 425, 448, 755, 799, 1040
HpaII CCGG 2 cut(s) 512, 774
Hpy188I TCNGA 4 cut(s) 403, 408, 646, 1013
Hpy188III TCNNGA 9 cut(s) 90, 144, 307, 356, 452, 782, 822, 989, 1000
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 4 cut(s) 91, 142, 193, 997
HpyCH4IV ACGT 2 cut(s) 622, 964
HpyCH4V TGCA 2 cut(s) 658, 761
HpyF10VI GCNNNNNNNGC 3 cut(s) 775, 857, 965
HpyF3I CTNAG 4 cut(s) 419, 453, 464, 903
HpySE526I ACGT 2 cut(s) 622, 964
Hsp92I GRCGYC 1 cut(s) 778
Hsp92II CATG 5 cut(s) 310, 673, 848, 869, 1003
HspAI GCGC 1 cut(s) 769
Ksp22I TGATCA 1 cut(s) 700
Kzo9I GATC 8 cut(s) 331, 361, 403, 415, 474, 600, 700, 922
LguI GCTCTTC 1 cut(s) 464
LmnI GCTCC 1 cut(s) 617
Lsp1109I GCAGC 2 cut(s) 184, 835
LweI GCATC 3 cut(s) 550, 595, 1015
MaeI CTAG 3 cut(s) 35, 537, 782
MaeII ACGT 2 cut(s) 622, 964
MaeIII GTNAC 1 cut(s) 30
MalI GATC 8 cut(s) 333, 363, 405, 417, 476, 602, 702, 924
MboI GATC 8 cut(s) 331, 361, 403, 415, 474, 600, 700, 922
MboII GAAGA 6 cut(s) 128, 308, 371, 451, 488, 1004
MfeI CAATTG 2 cut(s) 543, 888
MflI RGATCY 2 cut(s) 361, 415
MhlI GDGCHC 4 cut(s) 272, 459, 622, 1051
MluCI AATT 8 cut(s) 80, 543, 565, 831, 873, 888, 1016, 1057
MlyI GAGTC 1 cut(s) 1049
MnlI CCTC 9 cut(s) 225, 303, 324, 386, 492, 519, 625, 877, 898
MroXI GAANNNNTTC 1 cut(s) 131
MseI TTAA 6 cut(s) 42, 681, 717, 837, 912, 1019
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 2 cut(s) 512, 774
MspR9I CCNGG 5 cut(s) 366, 513, 774, 775, 1045
MunI CAATTG 2 cut(s) 543, 888
MvaI CCWGG 2 cut(s) 366, 1045
MvnI CGCG 1 cut(s) 276
MwoI GCNNNNNNNGC 3 cut(s) 775, 857, 965
NciI CCSGG 3 cut(s) 513, 774, 775
NdeI CATATG 1 cut(s) 935
NdeII GATC 8 cut(s) 331, 361, 403, 415, 474, 600, 700, 922
NlaIII CATG 5 cut(s) 310, 673, 848, 869, 1003
NlaIV GGNNCC 1 cut(s) 637
PagI TCATGA 2 cut(s) 306, 999
PceI AGGCCT 2 cut(s) 313, 396
PciSI GCTCTTC 1 cut(s) 464
PdmI GAANNNNTTC 1 cut(s) 131
PfeI GAWTC 4 cut(s) 425, 448, 755, 799
PfoI TCCNGGA 1 cut(s) 511
PkrI GCNGC 2 cut(s) 174, 850
PleI GAGTC 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 1048
Ppu21I YACGTR 1 cut(s) 965
Psp124BI GAGCTC 1 cut(s) 459
Psp6I CCWGG 2 cut(s) 364, 1043
PspFI CCCAGC 1 cut(s) 851
PspGI CCWGG 2 cut(s) 364, 1043
PspN4I GGNNCC 1 cut(s) 637
PspPI GGNCC 4 cut(s) 87, 212, 506, 636
PsrI GAACNNNNNNTAC 2 cut(s) 147, 179
PsuI RGATCY 2 cut(s) 361, 415
RsaI GTAC 1 cut(s) 940
RsaNI GTAC 1 cut(s) 939
SacI GAGCTC 1 cut(s) 459
SapI GCTCTTC 1 cut(s) 464
SaqAI TTAA 6 cut(s) 42, 681, 717, 837, 912, 1019
SatI GCNGC 2 cut(s) 173, 849
Sau3AI GATC 8 cut(s) 331, 361, 403, 415, 474, 600, 700, 922
Sau96I GGNCC 4 cut(s) 87, 212, 506, 636
SchI GAGTC 1 cut(s) 1049
ScrFI CCNGG 5 cut(s) 366, 513, 774, 775, 1045
SduI GDGCHC 4 cut(s) 272, 459, 622, 1051
SfaNI GCATC 3 cut(s) 550, 595, 1015
SfcI CTRYAG 1 cut(s) 429
SinI GGWCC 3 cut(s) 87, 506, 636
SmaI CCCGGG 1 cut(s) 775
SmlI CTYRAG 2 cut(s) 41, 1037
SmoI CTYRAG 2 cut(s) 41, 1037
Sse9I AATT 8 cut(s) 80, 543, 565, 831, 873, 888, 1016, 1057
SseBI AGGCCT 2 cut(s) 313, 396
SsiI CCGC 2 cut(s) 22, 85
SspMI CTAG 3 cut(s) 35, 537, 782
SstI GAGCTC 1 cut(s) 459
StuI AGGCCT 2 cut(s) 313, 396
StyD4I CCNGG 5 cut(s) 364, 511, 772, 773, 1043
StyI CCWWGG 1 cut(s) 486
TaiI ACGT 2 cut(s) 625, 967
TaqI TCGA 3 cut(s) 177, 603, 821
TaqII GACCGA 1 cut(s) 801
TasI AATT 8 cut(s) 80, 543, 565, 831, 873, 888, 1016, 1057
TatI WGTACW 1 cut(s) 938
TfiI GAWTC 4 cut(s) 425, 448, 755, 799
Tru1I TTAA 6 cut(s) 42, 681, 717, 837, 912, 1019
Tru9I TTAA 6 cut(s) 42, 681, 717, 837, 912, 1019
TseI GCWGC 2 cut(s) 172, 848
TspDTI ATGAA 4 cut(s) 461, 828, 988, 1016
TspGWI ACGGA 3 cut(s) 519, 708, 943
TspMI CCCGGG 1 cut(s) 773
Vha464I CTTAAG 1 cut(s) 41
VpaK11BI GGWCC 3 cut(s) 87, 506, 636
XapI RAATTY 1 cut(s) 831
XbaI TCTAGA 1 cut(s) 781
XmaI CCCGGG 1 cut(s) 773
XmnI GAANNNNTTC 1 cut(s) 131
XspI CTAG 3 cut(s) 35, 537, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.