Rh6AG143600

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0004350
Physical Location & Seq
Reverse (-)
22292652 .. 22296641
3990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG143600.1

Sequence Viewer

Length: 711 bp
ATGACGTCGACAGAGACAGAGGACGCCGTACGACGTCGCACCGCCATCACCGATTACCGGAAGAGGCTGCTCCAGCACAAGGAGCTCGACTCCCGAGTCCGCGCAGTGCGGGAAAACTTGCGAGGAGCTAAGAAGGAGTTTGGGAAAACTGAAGATGATTTGAAGTCGCTTCAAAGCGTTGGTCAGATTATAGGGGAAGTTCTGAGACCTCTCGATAATGAACGCTTGATAGTGAAGGCGAGTAGTGGCCCTAGGTATGTGGTTGGCTGTCGCAGTAAAGTGGACAAAGAAAAACTGACAGCGGGCACTCGGGTTGTTTTGGATATGACTACTCTGACTATCATGAGGGCTCTTCCAAGAGAGGTTGATCCAGTAGTGTATAATATGCTTCATGAAGATCCCGGTAATGTTAGCTACTCCGCTGTGGGAGGGCTAGGAGACCAGATCCGTGAGCTTAGGGAATCTATAGAGCTGCCTCTAATGAACCCTGAGCTCTTCCTTAGAGTTGGCATCAAACCACCCAAGGGTGTTCTTCTCTATGGACCTCCGGGTACAGGGAAGACATTGCTAGCCAGAGCAATTGCGAGCAACATAGATGCTAACTTTCTAAAGGTTGTATCAAGCGCCATTATTGATAAGTACATTGGTGAAAGTGCAAGATTGATAAGGGAAATGTTTGGTTATGCTCGTGATCACCAGGTTTGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

236

Amino Acids

26.29

Weight (kDa)

9.41

Isoelectric Point (pI)

32.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Prot_ATP_ID_OB_C PF16450 64 - 119 4.5e-15 Proteasomal ATPase OB C-terminal domain
AAA PF00004 177 - 233 4.7e-16 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 95
AatII GACGTC 2 cut(s) 8, 37
AccI GTMKAC 1 cut(s) 8
AccII CGCG 1 cut(s) 102
AciI CCGC 5 cut(s) 42, 100, 109, 302, 420
AclWI GGATC 3 cut(s) 362, 392, 439
AcuI CTGAAG 1 cut(s) 171
AcyI GRCGYC 3 cut(s) 5, 24, 34
AfaI GTAC 3 cut(s) 30, 553, 641
AfiI CCNNNNNNNGG 4 cut(s) 57, 79, 524, 554
AgsI TTSAA 2 cut(s) 163, 173
AjnI CCWGG 1 cut(s) 696
AluBI AGCT 6 cut(s) 85, 128, 414, 454, 472, 493
AluI AGCT 6 cut(s) 85, 128, 414, 454, 472, 493
Alw21I GWGCWC 2 cut(s) 87, 495
Alw26I GTCTC 3 cut(s) 8, 199, 432
AlwI GGATC 3 cut(s) 362, 392, 439
Ama87I CYCGRG 2 cut(s) 93, 309
AoxI GGCC 1 cut(s) 247
ApeKI GCWGC 2 cut(s) 67, 472
ArsI GACNNNNNNTTYG 2 cut(s) 166, 198
AspA2I CCTAGG 1 cut(s) 251
AspLEI GCGC 2 cut(s) 104, 626
AspS9I GGNCC 2 cut(s) 248, 542
AsuC2I CCSGG 2 cut(s) 402, 549
AsuHPI GGTGA 3 cut(s) 40, 659, 686
AsuNHI GCTAGC 1 cut(s) 568
AvaI CYCGRG 2 cut(s) 93, 309
AvaII GGWCC 1 cut(s) 542
AvrII CCTAGG 1 cut(s) 251
BaeGI GKGCMC 1 cut(s) 308
BanII GRGCYC 3 cut(s) 87, 352, 495
BauI CACGAG 1 cut(s) 687
BbsI GAAGAC 1 cut(s) 566
Bbv12I GWGCWC 2 cut(s) 87, 495
BbvI GCAGC 2 cut(s) 54, 459
BccI CCATC 1 cut(s) 53
BceAI ACGGC 1 cut(s) 11
BciT130I CCWGG 1 cut(s) 698
BclI TGATCA 1 cut(s) 691
BcnI CCSGG 2 cut(s) 402, 549
BcoDI GTCTC 3 cut(s) 8, 199, 432
BfaI CTAG 3 cut(s) 252, 434, 569
BfmI CTRYAG 1 cut(s) 465
BfoI RGCGCY 1 cut(s) 627
BisI GCNGC 2 cut(s) 68, 473
BlnI CCTAGG 1 cut(s) 251
BlsI GCNGC 2 cut(s) 69, 474
Bme1390I CCNGG 3 cut(s) 402, 549, 698
Bme18I GGWCC 1 cut(s) 542
BmeT110I CYCGRG 2 cut(s) 93, 309
BmgT120I GGNCC 2 cut(s) 248, 542
BmrFI CCNGG 3 cut(s) 402, 549, 698
BmsI GCATC 2 cut(s) 519, 586
BmtI GCTAGC 1 cut(s) 572
BpiI GAAGAC 1 cut(s) 566
BplI GAGNNNNNCTC 2 cut(s) 74, 106
BpmI CTGGAG 1 cut(s) 56
Bpu10I CCTNAGC 2 cut(s) 455, 489
BpuMI CCSGG 2 cut(s) 402, 549
BsaHI GRCGYC 3 cut(s) 5, 24, 34
BsaI GGTCTC 2 cut(s) 199, 432
BsaJI CCNNGG 2 cut(s) 251, 522
BsaWI WCCGGW 1 cut(s) 57
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 79, 524, 554
Bse1I ACTGG 1 cut(s) 371
Bse3DI GCAATG 1 cut(s) 563
BseBI CCWGG 1 cut(s) 698
BseDI CCNNGG 2 cut(s) 251, 522
BseLI CCNNNNNNNGG 4 cut(s) 57, 79, 524, 554
BseMI GCAATG 1 cut(s) 563
BseMII CTCAG 2 cut(s) 194, 480
BseNI ACTGG 1 cut(s) 371
BseRI GAGGAG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 308
BseXI GCAGC 2 cut(s) 54, 459
Bsh1236I CGCG 1 cut(s) 102
BshFI GGCC 1 cut(s) 249
BsiHKAI GWGCWC 2 cut(s) 87, 495
BsiHKCI CYCGRG 2 cut(s) 93, 309
BsiSI CCGG 3 cut(s) 58, 402, 548
BsiWI CGTACG 1 cut(s) 28
BslI CCNNNNNNNGG 4 cut(s) 57, 79, 524, 554
BsmAI GTCTC 3 cut(s) 8, 199, 432
BsnI GGCC 1 cut(s) 249
Bso31I GGTCTC 2 cut(s) 199, 432
BsoBI CYCGRG 2 cut(s) 93, 309
Bsp1286I GDGCHC 4 cut(s) 87, 308, 352, 495
Bsp143I GATC 4 cut(s) 367, 397, 444, 691
BspACI CCGC 5 cut(s) 42, 100, 109, 302, 420
BspANI GGCC 1 cut(s) 249
BspCNI CTCAG 2 cut(s) 195, 481
BspFNI CGCG 1 cut(s) 102
BspHI TCATGA 2 cut(s) 342, 391
BspOI GCTAGC 1 cut(s) 572
BspPI GGATC 3 cut(s) 362, 392, 439
BspQI GCTCTTC 2 cut(s) 357, 500
BspTNI GGTCTC 2 cut(s) 199, 432
BsrDI GCAATG 1 cut(s) 563
BsrI ACTGG 1 cut(s) 371
BssECI CCNNGG 2 cut(s) 251, 522
BssMI GATC 4 cut(s) 367, 397, 444, 691
BssNI GRCGYC 3 cut(s) 5, 24, 34
BssSI CACGAG 1 cut(s) 687
BssT1I CCWWGG 2 cut(s) 251, 522
Bst2BI CACGAG 1 cut(s) 687
Bst2UI CCWGG 1 cut(s) 698
Bst6I CTCTTC 3 cut(s) 56, 357, 500
BstACI GRCGYC 3 cut(s) 5, 24, 34
BstC8I GCNNGC 3 cut(s) 304, 570, 586
BstDEI CTNAG 5 cut(s) 129, 203, 455, 489, 500
BstFNI CGCG 1 cut(s) 102
BstH2I RGCGCY 1 cut(s) 627
BstHHI GCGC 2 cut(s) 104, 626
BstKTI GATC 4 cut(s) 370, 400, 447, 694
BstMAI GTCTC 3 cut(s) 8, 199, 432
BstMBI GATC 4 cut(s) 367, 397, 444, 691
BstMWI GCNNNNNNNGC 2 cut(s) 73, 82
BstNI CCWGG 1 cut(s) 698
BstSCI CCNGG 3 cut(s) 400, 547, 696
BstSFI CTRYAG 1 cut(s) 465
BstSLI GKGCMC 1 cut(s) 308
BstUI CGCG 1 cut(s) 102
BstV1I GCAGC 2 cut(s) 54, 459
BstV2I GAAGAC 1 cut(s) 566
BstX2I RGATCY 2 cut(s) 397, 444
BstYI RGATCY 2 cut(s) 397, 444
BsuRI GGCC 1 cut(s) 249
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 1 cut(s) 111
Cac8I GCNNGC 3 cut(s) 304, 570, 586
CciI TCATGA 2 cut(s) 342, 391
CfoI GCGC 2 cut(s) 104, 626
Cfr13I GGNCC 2 cut(s) 248, 542
CseI GACGC 1 cut(s) 32
CsiI ACCWGGT 1 cut(s) 696
Csp6I GTAC 3 cut(s) 29, 552, 640
CviAII CATG 2 cut(s) 343, 392
CviQI GTAC 3 cut(s) 29, 552, 640
DdeI CTNAG 5 cut(s) 129, 203, 455, 489, 500
DpnI GATC 4 cut(s) 369, 399, 446, 693
DpnII GATC 4 cut(s) 367, 397, 444, 691
DrdI GACNNNNNNGTC 1 cut(s) 95
DseDI GACNNNNNNGTC 1 cut(s) 95
Eam1104I CTCTTC 3 cut(s) 56, 357, 500
EarI CTCTTC 3 cut(s) 56, 357, 500
Ecl136II GAGCTC 2 cut(s) 85, 493
Eco130I CCWWGG 2 cut(s) 251, 522
Eco24I GRGCYC 3 cut(s) 87, 352, 495
Eco31I GGTCTC 2 cut(s) 199, 432
Eco47I GGWCC 1 cut(s) 542
Eco53kI GAGCTC 2 cut(s) 85, 493
Eco57I CTGAAG 1 cut(s) 171
Eco88I CYCGRG 2 cut(s) 93, 309
EcoICRI GAGCTC 2 cut(s) 85, 493
EcoRII CCWGG 1 cut(s) 696
EcoT14I CCWWGG 2 cut(s) 251, 522
EcoT38I GRGCYC 3 cut(s) 87, 352, 495
ErhI CCWWGG 2 cut(s) 251, 522
FaeI CATG 2 cut(s) 346, 395
FatI CATG 2 cut(s) 342, 391
FauI CCCGC 2 cut(s) 102, 295
FbaI TGATCA 1 cut(s) 691
FblI GTMKAC 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 68, 473
FriOI GRGCYC 3 cut(s) 87, 352, 495
Fsp4HI GCNGC 2 cut(s) 68, 473
FspBI CTAG 3 cut(s) 252, 434, 569
GlaI GCGC 2 cut(s) 103, 625
GluI GCNGC 2 cut(s) 68, 473
GsuI CTGGAG 1 cut(s) 56
HaeII RGCGCY 1 cut(s) 627
HaeIII GGCC 1 cut(s) 249
HapII CCGG 3 cut(s) 58, 402, 548
HgaI GACGC 1 cut(s) 32
HhaI GCGC 2 cut(s) 104, 626
Hin1I GRCGYC 3 cut(s) 5, 24, 34
Hin1II CATG 2 cut(s) 346, 395
Hin6I GCGC 2 cut(s) 102, 624
HinP1I GCGC 2 cut(s) 102, 624
HincII GTYRAC 1 cut(s) 9
HindII GTYRAC 1 cut(s) 9
HinfI GANTC 3 cut(s) 89, 96, 461
HpaII CCGG 3 cut(s) 58, 402, 548
HphI GGTGA 3 cut(s) 40, 659, 686
Hpy166II GTNNAC 2 cut(s) 9, 283
Hpy188I TCNGA 3 cut(s) 186, 204, 336
Hpy188III TCNNGA 5 cut(s) 93, 212, 343, 392, 689
Hpy8I GTNNAC 2 cut(s) 9, 283
Hpy99I CGWCG 3 cut(s) 10, 36, 39
HpyAV CCTTC 2 cut(s) 127, 229
HpyCH4IV ACGT 2 cut(s) 5, 34
HpyCH4V TGCA 1 cut(s) 656
HpyF10VI GCNNNNNNNGC 2 cut(s) 73, 82
HpyF3I CTNAG 5 cut(s) 129, 203, 455, 489, 500
HpySE526I ACGT 2 cut(s) 5, 34
Hsp92I GRCGYC 3 cut(s) 5, 24, 34
Hsp92II CATG 2 cut(s) 346, 395
HspAI GCGC 2 cut(s) 102, 624
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 4 cut(s) 367, 397, 444, 691
LguI GCTCTTC 2 cut(s) 357, 500
LmnI GCTCC 3 cut(s) 75, 82, 125
Lsp1109I GCAGC 2 cut(s) 54, 459
LweI GCATC 2 cut(s) 519, 586
MabI ACCWGGT 1 cut(s) 696
MaeI CTAG 3 cut(s) 252, 434, 569
MaeII ACGT 2 cut(s) 5, 34
MalI GATC 4 cut(s) 369, 399, 446, 693
MboI GATC 4 cut(s) 367, 397, 444, 691
MboII GAAGA 7 cut(s) 73, 164, 344, 407, 487, 524, 571
MfeI CAATTG 1 cut(s) 579
MflI RGATCY 2 cut(s) 397, 444
MhlI GDGCHC 4 cut(s) 87, 308, 352, 495
MluCI AATT 1 cut(s) 579
MlyI GAGTC 2 cut(s) 83, 105
MnlI CCTC 9 cut(s) 13, 57, 116, 219, 339, 355, 422, 486, 555
MspA1I CMGCKG 2 cut(s) 302, 422
MspI CCGG 3 cut(s) 58, 402, 548
MspR9I CCNGG 3 cut(s) 402, 549, 698
MunI CAATTG 1 cut(s) 579
MvaI CCWGG 1 cut(s) 698
MvnI CGCG 1 cut(s) 102
MwoI GCNNNNNNNGC 2 cut(s) 73, 82
NciI CCSGG 2 cut(s) 402, 549
NdeII GATC 4 cut(s) 367, 397, 444, 691
NheI GCTAGC 1 cut(s) 568
NlaIII CATG 2 cut(s) 346, 395
PagI TCATGA 2 cut(s) 342, 391
PciSI GCTCTTC 2 cut(s) 357, 500
PfeI GAWTC 1 cut(s) 461
Pfl23II CGTACG 1 cut(s) 28
PkrI GCNGC 2 cut(s) 69, 474
PleI GAGTC 2 cut(s) 83, 104
PpsI GAGTC 2 cut(s) 83, 104
Psp124BI GAGCTC 2 cut(s) 87, 495
Psp6I CCWGG 1 cut(s) 696
PspGI CCWGG 1 cut(s) 696
PspLI CGTACG 1 cut(s) 28
PspPI GGNCC 2 cut(s) 248, 542
PsuI RGATCY 2 cut(s) 397, 444
RsaI GTAC 3 cut(s) 30, 553, 641
RsaNI GTAC 3 cut(s) 29, 552, 640
SacI GAGCTC 2 cut(s) 87, 495
SalI GTCGAC 1 cut(s) 7
SapI GCTCTTC 2 cut(s) 357, 500
SatI GCNGC 2 cut(s) 68, 473
Sau3AI GATC 4 cut(s) 367, 397, 444, 691
Sau96I GGNCC 2 cut(s) 248, 542
SchI GAGTC 2 cut(s) 83, 105
ScrFI CCNGG 3 cut(s) 402, 549, 698
SduI GDGCHC 4 cut(s) 87, 308, 352, 495
SexAI ACCWGGT 1 cut(s) 696
SfaNI GCATC 2 cut(s) 519, 586
SfcI CTRYAG 1 cut(s) 465
SinI GGWCC 1 cut(s) 542
Sse9I AATT 1 cut(s) 579
SsiI CCGC 5 cut(s) 42, 100, 109, 302, 420
SspMI CTAG 3 cut(s) 252, 434, 569
SstI GAGCTC 2 cut(s) 87, 495
StyD4I CCNGG 3 cut(s) 400, 547, 696
StyI CCWWGG 2 cut(s) 251, 522
TaiI ACGT 2 cut(s) 8, 37
TaqI TCGA 3 cut(s) 8, 87, 213
TasI AATT 1 cut(s) 579
TatI WGTACW 1 cut(s) 639
TfiI GAWTC 1 cut(s) 461
TscAI CASTG 1 cut(s) 111
TseI GCWGC 2 cut(s) 67, 472
TspDTI ATGAA 4 cut(s) 234, 380, 408, 497
TspGWI ACGGA 1 cut(s) 437
TspRI CASTG 1 cut(s) 111
VpaK11BI GGWCC 1 cut(s) 542
XmaJI CCTAGG 1 cut(s) 251
XmiI GTMKAC 1 cut(s) 8
XspI CTAG 3 cut(s) 252, 434, 569
ZraI GACGTC 2 cut(s) 6, 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.