Rorug06G0022300

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004350
Physical Location & Seq
Forward (+)
2799486 .. 2800287
802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0022300.1

Sequence Viewer

Length: 444 bp
ATGGGGCAATCAAGGCGAGGAAGACTGGCGGCGCTCCGGCGACTGAAGGCTGGTTCACCGCAGTCGTCGCTGTGTGTGGGCGGGAATGGGCACGGTGGTACTCTTGGAGATTCAGGCGAGGCTTGCAAAGAGGTGGTGCAGATTGGGTTCCAAACCAGGAACGGGTTCGATCGGAGAATTCCCACGGTACAACAACTATTGCAAGATTTCTTTAATGGTAAGGAGCTTTGCAAGAGCATCAATCCTGACGAAGCAATTGCATATGGTGCTGCCGTACAGGCTGCAGTTTTGCGTGGTGGCATCGAGAAGGTTCAAGACTTACTCTTGTTGGATGTAACTCCACATTCCCTTGGTTGTATGCGTTACACAGAAGAATATAGAGTTTATGTCCCAAGAAACACTACCATTCCACCAAAAAAACTAAAATGGCCACAACTGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005838 GO:0005886 GO:0005911 GO:0006355 GO:0006357 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008134 GO:0008150 GO:0008152 GO:0008540 GO:0009056 GO:0009057 GO:0009506 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010033 GO:0010243 GO:0010468 GO:0010498 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017025 GO:0017111 GO:0019219 GO:0019222 GO:0019538 GO:0019941 GO:0022624 GO:0030054 GO:0030162 GO:0030163 GO:0030312 GO:0030433 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031331 GO:0031334 GO:0031595 GO:0031597 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0033554 GO:0034976 GO:0036402 GO:0036503 GO:0042176 GO:0042221 GO:0042623 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043254 GO:0043632 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0045893 GO:0045898 GO:0045899 GO:0045935 GO:0045944 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051603 GO:0051716 GO:0055044 GO:0060255 GO:0060260 GO:0060261 GO:0061136 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1901698 GO:1901800 GO:1902494 GO:1902680 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1903506 GO:1903508 GO:1905368 GO:1905369 GO:2000112 GO:2000142 GO:2000144 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03050 ko05169 map03050 map05169
Pfam Domains
Protein Families
AAA

Protein Analysis

147

Amino Acids

16.16

Weight (kDa)

9.47

Isoelectric Point (pI)

45.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP70 PF00012 58 - 141 2.3e-25 Hsp70 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 29, 59, 81
AcoI YGGCCR 1 cut(s) 428
AcsI RAATTY 1 cut(s) 177
AcuI CTGAAG 1 cut(s) 65
AfaI GTAC 3 cut(s) 100, 189, 276
AfiI CCNNNNNNNGG 1 cut(s) 162
AgsI TTSAA 1 cut(s) 314
AjnI CCWGG 1 cut(s) 155
AluBI AGCT 1 cut(s) 226
AluI AGCT 1 cut(s) 226
AoxI GGCC 1 cut(s) 428
ApeKI GCWGC 2 cut(s) 269, 281
ApoI RAATTY 1 cut(s) 177
Asp700I GAANNNNTTC 1 cut(s) 164
AspLEI GCGC 1 cut(s) 34
AsuHPI GGTGA 1 cut(s) 48
BaeGI GKGCMC 1 cut(s) 93
BalI TGGCCA 1 cut(s) 430
BbsI GAAGAC 1 cut(s) 28
BbvI GCAGC 2 cut(s) 256, 268
BceAI ACGGC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 1 cut(s) 157
BfmI CTRYAG 1 cut(s) 282
BfoI RGCGCY 1 cut(s) 35
BglI GCCNNNNNGGC 1 cut(s) 278
BisI GCNGC 3 cut(s) 30, 270, 282
BlsI GCNGC 3 cut(s) 31, 271, 283
Bme1390I CCNGG 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 149
BmrFI CCNGG 1 cut(s) 157
BmsI GCATC 2 cut(s) 246, 309
BpiI GAAGAC 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 183, 349
Bsc4I CCNNNNNNNGG 1 cut(s) 162
Bse1I ACTGG 1 cut(s) 30
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 2 cut(s) 183, 349
BseGI GGATG 1 cut(s) 337
BseLI CCNNNNNNNGG 1 cut(s) 162
BseNI ACTGG 1 cut(s) 30
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 2 cut(s) 256, 268
BsgI GTGCAG 1 cut(s) 158
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 1 cut(s) 430
BsiEI CGRYCG 1 cut(s) 172
BsiSI CCGG 1 cut(s) 37
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 374
BsnI GGCC 1 cut(s) 430
Bsp1286I GDGCHC 1 cut(s) 93
Bsp143I GATC 1 cut(s) 169
BspACI CCGC 3 cut(s) 29, 59, 81
BspANI GGCC 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 149
BspMAI CTGCAG 1 cut(s) 286
BsrI ACTGG 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 183, 349
BssMI GATC 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 349
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 3 cut(s) 95, 187, 438
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 124
BstDSI CCRYGG 1 cut(s) 183
BstF5I GGATG 1 cut(s) 337
BstH2I RGCGCY 1 cut(s) 35
BstHHI GCGC 1 cut(s) 34
BstKTI GATC 1 cut(s) 172
BstMBI GATC 1 cut(s) 169
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 5 cut(s) 13, 67, 123, 266, 278
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 155
BstSFI CTRYAG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 256, 268
BstV2I GAAGAC 1 cut(s) 28
BsuRI GGCC 1 cut(s) 430
BtgI CCRYGG 1 cut(s) 183
BtsCI GGATG 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 124
CfoI GCGC 1 cut(s) 34
Csp6I GTAC 3 cut(s) 99, 188, 275
CviJI RGCY 5 cut(s) 50, 122, 226, 281, 430
CviKI_1 RGCY 5 cut(s) 50, 122, 226, 281, 430
CviQI GTAC 3 cut(s) 99, 188, 275
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 428
Eco130I CCWWGG 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 65
EcoRI GAATTC 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 155
EcoT14I CCWWGG 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 349
FaiI YATR 5 cut(s) 262, 264, 359, 378, 387
FaqI GGGAC 1 cut(s) 374
FauI CCCGC 1 cut(s) 74
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 3 cut(s) 30, 270, 282
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 3 cut(s) 30, 270, 282
GlaI GCGC 1 cut(s) 33
GluI GCNGC 3 cut(s) 30, 270, 282
HaeII RGCGCY 1 cut(s) 35
HaeIII GGCC 1 cut(s) 430
HapII CCGG 1 cut(s) 37
HhaI GCGC 1 cut(s) 34
Hin6I GCGC 1 cut(s) 32
HinP1I GCGC 1 cut(s) 32
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 37
HphI GGTGA 1 cut(s) 48
Hpy166II GTNNAC 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 3 cut(s) 245, 304, 314
Hpy8I GTNNAC 1 cut(s) 56
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 2 cut(s) 40, 301
HpyCH4III ACNGT 3 cut(s) 95, 187, 438
HpyCH4V TGCA 6 cut(s) 126, 139, 202, 231, 260, 284
HpyF10VI GCNNNNNNNGC 5 cut(s) 13, 67, 123, 266, 278
HspAI GCGC 1 cut(s) 32
Kzo9I GATC 1 cut(s) 169
LmnI GCTCC 2 cut(s) 39, 223
LpnPI CCDG 8 cut(s) 11, 36, 50, 99, 142, 169, 258, 263
Lsp1109I GCAGC 2 cut(s) 256, 268
LweI GCATC 2 cut(s) 246, 309
MaeIII GTNAC 2 cut(s) 334, 362
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 2 cut(s) 33, 383
MfeI CAATTG 1 cut(s) 255
MhlI GDGCHC 1 cut(s) 93
MlsI TGGCCA 1 cut(s) 430
MluCI AATT 2 cut(s) 177, 255
MluNI TGGCCA 1 cut(s) 430
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 3 cut(s) 11, 112, 124
Mox20I TGGCCA 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 164
MscI TGGCCA 1 cut(s) 430
MseI TTAA 2 cut(s) 213, 442
Msp20I TGGCCA 1 cut(s) 430
MspI CCGG 1 cut(s) 37
MspR9I CCNGG 1 cut(s) 157
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 5 cut(s) 13, 67, 123, 266, 278
NdeI CATATG 1 cut(s) 262
NdeII GATC 1 cut(s) 169
NlaIV GGNNCC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 1 cut(s) 110
PkrI GCNGC 3 cut(s) 31, 271, 283
Ple19I CGATCG 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 149
PstI CTGCAG 1 cut(s) 286
PvuI CGATCG 1 cut(s) 172
RsaI GTAC 3 cut(s) 100, 189, 276
RsaNI GTAC 3 cut(s) 99, 188, 275
SaqAI TTAA 2 cut(s) 213, 442
SatI GCNGC 3 cut(s) 30, 270, 282
Sau3AI GATC 1 cut(s) 169
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 1 cut(s) 93
SetI ASST 3 cut(s) 135, 228, 312
SfaNI GCATC 2 cut(s) 246, 309
SfcI CTRYAG 1 cut(s) 282
Sse9I AATT 2 cut(s) 177, 255
SsiI CCGC 3 cut(s) 29, 59, 81
StyD4I CCNGG 1 cut(s) 155
StyI CCWWGG 1 cut(s) 349
TaaI ACNGT 3 cut(s) 95, 187, 438
TaqI TCGA 2 cut(s) 168, 303
TasI AATT 2 cut(s) 177, 255
TauI GCSGC 1 cut(s) 32
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 2 cut(s) 213, 442
Tru9I TTAA 2 cut(s) 213, 442
TseI GCWGC 2 cut(s) 269, 281
XapI RAATTY 1 cut(s) 177
XmnI GAANNNNTTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.