Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014668

Physical Location & Seq

Genomic Coordinates Reverse (-)

59577926 .. 59581935

Gene Structure 4010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26749

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2505 bp

ATGCCACGTCTGCTTCATGGGATACTTAATGCAACAATTTATGGGATTGATAAGCTACACAGTGGATGTGGACTCGGCTTATTGTGGAAGTGTTCTTGCCATAGTAACTTGCTTTTTATTTCTTACTTTCACATTCTGGATGCACAACAGTCGCCTAAAAAATGTGTAGATCAAATCAAGAGGCTGGTACTGTGCGGACCTCAGATTTCTGGTTCCAAAATCTATGCAACAGTTGATCTAGACAAGGCTCGGGTGGCACGAACCCGAATGATAAACAATCCCCACAACCCCATATGGAAGGAAGAGTTCCACATCTACAGTGCTCATTTCATCTCACACATTATCTTCACTGTCAAAGCTAATGATCCTATTGGTGCCACACTCATAGGAAGAGCTTATATACCTGTTGAAGATATCATAAAGGGCTACGTGGTGGACAGATGGGTTGAGATACTAGATGAAGAACACAACCCCATCCATGGAAACTCTAGAATTCATGTCAAGTTGCAATTCTCAAGTGTTGCAGAAGATGCTCATTGGTCTCAAGGACTCAGAAGTCCTGACTATGAGGGTGTTCCTTGGACCTTTTTCAATCAAAGACAGGGTTGCAGGGTTACCCTCTACCAAGATTCGCATGTCGCGGATGATTTTAATCCTGGGATTCCTATGGCCAATGGGGAATTCTACGAACCACGAAGATGTTGGGAGGACATATTTGATGCAATCACTAATGCAAAACACTTGATCTATATAACTGGCTGGTCTGTCTCCACTGAAATAAACTTGCTGAGGGATCCACAAAGGCGAAGAGCAGGAGATGAGCTCACATTAGGACAGCTTCTCAAGAAAAAGGCTGATGAGGGTGTTCTAGTTCTCTTGCTTGTTTGGGATGACAGAACTTCTATTCCTCAATTTAAAAAGGATGGTCTGATGACAACACATGATCAAGAAACTGAGGAGTACTTTCGAAACACAAAAGTTCATTGCTTCCTTTGCCCGCGGAACCCTGATCTTGGTAGAAGCACTATTCAAGGTTTTGAGACTGCTACAATGTTCACTCACCATCAAAAAACAGTAGTAGTTGACAGTGAGATAGTCGATGGAGATCCCTCGCAAAAAAGGAGGATTCTGAGCTTTGTTGGAGGCATTGATCTTTGTGATGGAAGATATGACACTCAGAAACACCCCCTATTTTCAACTCTAGGCACAACTCACCATAAGGACTTCCATCAGCCAAACTTTCCAGGCTCTTCGATTAGAAAAGGCGGTCCAAGGGAGCCATGGCATGATATCCATTGCAAACTAGAAGGGCCTGTTTCTTGGGATGTCTTGTACAACTTTGAGCAGAGGTGGAAAAAGCAAGTTGGTGACAAGTACTTATTTTCACTAAGCAAGCTTGAGGAAATCACAGTTCACCCTTTACAGAACAAGTTATCAAATGATAGTGAAGCATGGAATGTTCAGCTGTTTCGTTCCATCGACAATGGAGCTGCTTTGGGGTTTCCTGAGAATCCGCTTGAAGCAACACAAAGGGGACTTGTAAGTGGGAAGAACAACATCCTAGACAGAAGCATCCAGGATGCATATATCCACGCCATTCGCCGAGCAAAGAATTTCATTTACATAGAGAATCAGTACTTCCTTGGAAGCTCATTTGGGTGGAGGTCAAAAGATATCAAGGATGAGGATATTAATGCTCTGCATCTTATCCCAAAGGAGCTGTCACTGAAGATTGTTAGTAAAATTGAAGCAGGGGAGAGGTTTGCTGTCTACATTGTTCTCCCAATGTGGCCAGAAGGTATACCCGAGAGTGGTTCTGTTCAGGCTATATTAGATTGGCAAAAAAGGACATTGGAGATGATGTACACTGATATCTCTGAGGCCCTTCAGAGAAAGGGTTTGAATGCAAACCCTAGAGACTATCTTACATTCTTCTGCCTTGGGAACCGGGAGACCGTGAAGGATGGAGAATATGTACCTCCAGAGACTCCAGAGCCAGACACTGATTACATCAGAGCTCAGAAGGCCCGGCGCTTCATGATTTATGTGCACTCAAAAATGATGATAGTTGATGATGAATACATTATCATTGGATCTGCCAACATAAACCAAAGGTCAATGGATGGGGCAAGGGACTCCGAAATTGCTATGGGAGCATTTCAGACTAATTATTTGGCTAATTCCACTGACCCAGCTAGGGGAGAGATATATGCTTTCAGGGTGACACTATGGTATGAGCACCTTAAAGTGCTTGACAGCTCTTTCTTGCATCCAGAATCAATGGAATGCATCCGGACGGTGAATCACCTTGCGGAAACAAACTGGGATCTTTTCTCAAGTGACACTTTTCCTGGTGACCTTCCCGGTCACCTTCTTCGATATCCTGTTGAGGTAAGCAAGACTGGAGCTCTAACAACACTGCCGGGGTTCGAACATTTACCCGACACCAAGGCTCGAGTCTTTGGCACCAAGTCTGAGTACCTTCTTCCACTCCTTACCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0006629 GO:0006643 GO:0006950 GO:0006970 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0022622 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046466 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

834

Amino Acids

95.34

Weight (kDa)

6.18

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	69 - 150	7e-10	C2 domain
PLDc	PF00614	681 - 706	3.5e-08	Phospholipase D Active site motif
PLDc_2	PF13091	681 - 712	4.1e-06	PLD-like domain
PLD_C	PF12357	752 - 824	9e-27	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29120
malus_domestica	MD15G1125000.v1.1
prunus_persica	Prupe.1G480500_v2.0.a1 Prupe.1G480500_v2.0.a1
pyrus_communis	pycom15g11260
rosa_chinensis	RchiOBHm_Chr6g0298001
rosa_laevigata	RLG00000011544
rosa_multiflora	Rmu_sc0002800.1_g000023
rosa_roxburghii	Rroxscaffold_7G00170010 Rroxscaffold_7G00178840
rosa_rugosa	Rorug06G0277800 Rorug06G0277900
rosa_samantha	Rh6AG388200 Rh6BG396400 Rh6CG402400 Rh6DG388600
rosa_wichuraiana	Rw6G033880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	555
AccB1I	GGYRCC	2 cut(s)	374, 2465
AccI	GTMKAC	2 cut(s)	1770, 1801
AccII	CGCG	2 cut(s)	641, 1000
AccIII	TCCGGA	1 cut(s)	2292
AciI	CCGC	7 cut(s)	195, 641, 998, 1000, 1266, 1514, 2312
AclWI	GGATC	6 cut(s)	359, 788, 801, 1100, 2101, 2334
AcoI	YGGCCR	2 cut(s)	669, 1790
AcsI	RAATTY	3 cut(s)	492, 680, 1612
AcuI	CTGAAG	2 cut(s)	1748, 1871
AfaI	GTAC	8 cut(s)	189, 962, 1334, 1376, 1637, 1865, 1977, 2480
AfiI	CCNNNNNNNGG	5 cut(s)	479, 1013, 1811, 2197, 2198
AgsI	TTSAA	7 cut(s)	410, 592, 1031, 1197, 1520, 1748, 1903
AjiI	CACGTC	1 cut(s)	8
AjnI	CCWGG	4 cut(s)	655, 1243, 1575, 2350
AjuI	GAANNNNNNNTTGG	2 cut(s)	665, 697
AloI	GAACNNNNNNTCC	2 cut(s)	889, 921
Alw21I	GWGCWC	6 cut(s)	325, 825, 2020, 2052, 2241, 2410
Alw26I	GTCTC	6 cut(s)	546, 772, 1034, 1911, 1946, 1979
Alw44I	GTGCAC	1 cut(s)	2048
AlwI	GGATC	6 cut(s)	359, 788, 801, 1100, 2101, 2334
AlwNI	CAGNNNCTG	1 cut(s)	2003
Ama87I	CYCGRG	3 cut(s)	249, 1805, 2454
Aor13HI	TCCGGA	1 cut(s)	2292
AoxI	GGCC	5 cut(s)	669, 1310, 1790, 1881, 2025
ApaLI	GTGCAC	1 cut(s)	2048
ApeKI	GCWGC	1 cut(s)	1490
ApoI	RAATTY	3 cut(s)	492, 680, 1612
ArsI	GACNNNNNNTTYG	4 cut(s)	1706, 1738, 2155, 2187
AseI	ATTAAT	1 cut(s)	1692
AspLEI	GCGC	1 cut(s)	2034
AspS9I	GGNCC	6 cut(s)	197, 582, 1268, 1310, 1882, 2026
AsuC2I	CCSGG	4 cut(s)	1949, 2029, 2364, 2424
AsuHPI	GGTGA	9 cut(s)	1052, 1205, 1379, 1406, 2233, 2297, 2311, 2360, 2366
AsuII	TTCGAA	2 cut(s)	967, 2430
AvaI	CYCGRG	3 cut(s)	249, 1805, 2454
AvaII	GGWCC	3 cut(s)	197, 582, 1268
BaeGI	GKGCMC	1 cut(s)	2052
BalI	TGGCCA	2 cut(s)	671, 1792
BamHI	GGATCC	1 cut(s)	793
BanI	GGYRCC	2 cut(s)	374, 2465
BanII	GRGCYC	3 cut(s)	825, 2020, 2410
Bbv12I	GWGCWC	6 cut(s)	325, 825, 2020, 2052, 2241, 2410
BbvCI	CCTCAGC	1 cut(s)	788
BbvI	GCAGC	1 cut(s)	1477
BcgI	CGANNNNNNTGC	2 cut(s)	132, 166
BciT130I	CCWGG	4 cut(s)	657, 1245, 1577, 2352
BciVI	GTATCC	1 cut(s)	15
BclI	TGATCA	1 cut(s)	943
BcnI	CCSGG	4 cut(s)	1949, 2029, 2364, 2424
BcoDI	GTCTC	6 cut(s)	546, 772, 1034, 1911, 1946, 1979
BfmI	CTRYAG	1 cut(s)	316
BfoI	RGCGCY	1 cut(s)	2035
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	1491
BlsI	GCNGC	1 cut(s)	1492
BmcAI	AGTACT	3 cut(s)	962, 1376, 1637
Bme1390I	CCNGG	8 cut(s)	657, 1245, 1577, 1949, 2029, 2352, 2364, 2424
Bme18I	GGWCC	3 cut(s)	197, 582, 1268
BmeT110I	CYCGRG	3 cut(s)	249, 1805, 2454
BmgBI	CACGTC	1 cut(s)	8
BmgT120I	GGNCC	6 cut(s)	197, 582, 1268, 1310, 1882, 2026
BmiI	GGNNCC	7 cut(s)	214, 376, 795, 1004, 1278, 1946, 2467
BmrFI	CCNGG	8 cut(s)	657, 1245, 1577, 1949, 2029, 2352, 2364, 2424
BmrI	ACTGGG	1 cut(s)	2332
BmsI	GCATC	8 cut(s)	130, 520, 709, 1570, 1581, 1711, 2278, 2298
BmuI	ACTGGG	1 cut(s)	2332
BplI	GAGNNNNNCTC	2 cut(s)	807, 839
BpmI	CTGGAG	3 cut(s)	1965, 1974, 2424
Bpu10I	CCTNAGC	1 cut(s)	788
Bpu14I	TTCGAA	2 cut(s)	967, 2430
BpuEI	CTTGAG	5 cut(s)	499, 528, 827, 1418, 2320
BpuMI	CCSGG	4 cut(s)	1949, 2029, 2364, 2424
BsaAI	YACGTR	1 cut(s)	430
BsaBI	GATNNNNATC	2 cut(s)	651, 1104
BsaI	GGTCTC	2 cut(s)	546, 1946
BsaWI	WCCGGW	1 cut(s)	2292
BsaXI	ACNNNNNCTCC	4 cut(s)	1847, 1877, 1959, 1989
Bsc4I	CCNNNNNNNGG	5 cut(s)	479, 1013, 1811, 2197, 2198
Bse1I	ACTGG	3 cut(s)	760, 2327, 2407
Bse3DI	GCAATG	2 cut(s)	982, 1294
Bse8I	GATNNNNATC	2 cut(s)	651, 1104
BseAI	TCCGGA	1 cut(s)	2292
BseBI	CCWGG	4 cut(s)	657, 1245, 1577, 2352
BseJI	GATNNNNATC	2 cut(s)	651, 1104
BseLI	CCNNNNNNNGG	5 cut(s)	479, 1013, 1811, 2197, 2198
BseMI	GCAATG	2 cut(s)	982, 1294
BseNI	ACTGG	3 cut(s)	760, 2327, 2407
BseRI	GAGGAG	1 cut(s)	971
BseSI	GKGCMC	1 cut(s)	2052
BseXI	GCAGC	1 cut(s)	1477
BseYI	CCCAGC	1 cut(s)	2191
Bsh1236I	CGCG	2 cut(s)	641, 1000
BshFI	GGCC	5 cut(s)	671, 1312, 1792, 1883, 2027
BshNI	GGYRCC	2 cut(s)	374, 2465
BsiHKAI	GWGCWC	6 cut(s)	325, 825, 2020, 2052, 2241, 2410
BsiHKCI	CYCGRG	3 cut(s)	249, 1805, 2454
BsiSI	CCGG	5 cut(s)	1948, 2029, 2293, 2364, 2423
BslFI	GGGAC	2 cut(s)	1548, 2147
BslI	CCNNNNNNNGG	5 cut(s)	479, 1013, 1811, 2197, 2198
BsmAI	GTCTC	6 cut(s)	546, 772, 1034, 1911, 1946, 1979
BsmFI	GGGAC	2 cut(s)	1548, 2147
BsmI	GAATGC	2 cut(s)	1909, 2291
BsnI	GGCC	5 cut(s)	671, 1312, 1792, 1883, 2027
Bso31I	GGTCTC	2 cut(s)	546, 1946
BsoBI	CYCGRG	3 cut(s)	249, 1805, 2454
Bsp119I	TTCGAA	2 cut(s)	967, 2430
Bsp1286I	GDGCHC	6 cut(s)	325, 825, 2020, 2052, 2241, 2410
Bsp13I	TCCGGA	1 cut(s)	2292
Bsp1407I	TGTACA	2 cut(s)	1332, 1863
Bsp19I	CCATGG	2 cut(s)	478, 1280
BspACI	CCGC	7 cut(s)	195, 641, 998, 1000, 1266, 1514, 2312
BspANI	GGCC	5 cut(s)	671, 1312, 1792, 1883, 2027
BspEI	TCCGGA	1 cut(s)	2292
BspFNI	CGCG	2 cut(s)	641, 1000
BspHI	TCATGA	1 cut(s)	2037
BspLI	GGNNCC	7 cut(s)	214, 376, 795, 1004, 1278, 1946, 2467
BspPI	GGATC	6 cut(s)	359, 788, 801, 1100, 2101, 2334
BspQI	GCTCTTC	3 cut(s)	385, 802, 1255
BspT104I	TTCGAA	2 cut(s)	967, 2430
BspT107I	GGYRCC	2 cut(s)	374, 2465
BspTNI	GGTCTC	2 cut(s)	546, 1946
BsrDI	GCAATG	2 cut(s)	982, 1294
BsrGI	TGTACA	2 cut(s)	1332, 1863
BsrI	ACTGG	3 cut(s)	760, 2327, 2407
BssNAI	GTATAC	1 cut(s)	1802
BssT1I	CCWWGG	7 cut(s)	478, 578, 1271, 1280, 1642, 1939, 2448
Bst1107I	GTATAC	1 cut(s)	1802
Bst2UI	CCWGG	4 cut(s)	657, 1245, 1577, 2352
Bst6I	CTCTTC	4 cut(s)	297, 385, 802, 1255
BstAPI	GCANNNNNTGC	1 cut(s)	530
BstAUI	TGTACA	2 cut(s)	1332, 1863
BstBAI	YACGTR	1 cut(s)	430
BstBI	TTCGAA	2 cut(s)	967, 2430
BstC8I	GCNNGC	2 cut(s)	998, 1394
BstDSI	CCRYGG	3 cut(s)	478, 998, 1280
BstEII	GGTNACC	3 cut(s)	613, 2354, 2366
BstFNI	CGCG	2 cut(s)	641, 1000
BstH2I	RGCGCY	1 cut(s)	2035
BstHHI	GCGC	1 cut(s)	2034
BstMAI	GTCTC	6 cut(s)	546, 772, 1034, 1911, 1946, 1979
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 254, 530, 993, 2024, 2153
BstNI	CCWGG	4 cut(s)	657, 1245, 1577, 2352
BstNSI	RCATGY	1 cut(s)	638
BstPI	GGTNACC	3 cut(s)	613, 2354, 2366
BstSCI	CCNGG	8 cut(s)	655, 1243, 1575, 1947, 2027, 2350, 2362, 2422
BstSFI	CTRYAG	1 cut(s)	316
BstSLI	GKGCMC	1 cut(s)	2052
BstUI	CGCG	2 cut(s)	641, 1000
BstV1I	GCAGC	1 cut(s)	1477
BstX2I	RGATCY	4 cut(s)	793, 1105, 2093, 2326
BstYI	RGATCY	4 cut(s)	793, 1105, 2093, 2326
BstZ17I	GTATAC	1 cut(s)	1802
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	5 cut(s)	671, 1312, 1792, 1883, 2027
BtgI	CCRYGG	3 cut(s)	478, 998, 1280
BtrI	CACGTC	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	2417
Cac8I	GCNNGC	2 cut(s)	998, 1394
CaiI	CAGNNNCTG	1 cut(s)	2003
CciI	TCATGA	1 cut(s)	2037
CfoI	GCGC	1 cut(s)	2034
Cfr13I	GGNCC	6 cut(s)	197, 582, 1268, 1310, 1882, 2026
Cfr42I	CCGCGG	1 cut(s)	1001
Csp6I	GTAC	8 cut(s)	188, 961, 1333, 1375, 1636, 1864, 1976, 2479
CviAII	CATG	9 cut(s)	17, 479, 497, 635, 941, 1281, 1286, 1452, 2038
CviQI	GTAC	8 cut(s)	188, 961, 1333, 1375, 1636, 1864, 1976, 2479
DraI	TTTAAA	1 cut(s)	916
DrdI	GACNNNNNNGTC	1 cut(s)	555
DseDI	GACNNNNNNGTC	1 cut(s)	555
EaeI	YGGCCR	2 cut(s)	669, 1790
Eam1104I	CTCTTC	4 cut(s)	297, 385, 802, 1255
EarI	CTCTTC	4 cut(s)	297, 385, 802, 1255
Ecl136II	GAGCTC	3 cut(s)	823, 2018, 2408
Eco130I	CCWWGG	7 cut(s)	478, 578, 1271, 1280, 1642, 1939, 2448
Eco24I	GRGCYC	3 cut(s)	825, 2020, 2410
Eco31I	GGTCTC	2 cut(s)	546, 1946
Eco32I	GATATC	5 cut(s)	415, 1291, 1675, 1873, 2381
Eco47I	GGWCC	3 cut(s)	197, 582, 1268
Eco53kI	GAGCTC	3 cut(s)	823, 2018, 2408
Eco57I	CTGAAG	2 cut(s)	1748, 1871
Eco88I	CYCGRG	3 cut(s)	249, 1805, 2454
Eco91I	GGTNACC	3 cut(s)	613, 2354, 2366
EcoICRI	GAGCTC	3 cut(s)	823, 2018, 2408
EcoO109I	RGGNCCY	2 cut(s)	1310, 1882
EcoO65I	GGTNACC	3 cut(s)	613, 2354, 2366
EcoRI	GAATTC	2 cut(s)	492, 680
EcoRII	CCWGG	4 cut(s)	655, 1243, 1575, 2350
EcoRV	GATATC	5 cut(s)	415, 1291, 1675, 1873, 2381
EcoT14I	CCWWGG	7 cut(s)	478, 578, 1271, 1280, 1642, 1939, 2448
EcoT22I	ATGCAT	2 cut(s)	1585, 2291
EcoT38I	GRGCYC	3 cut(s)	825, 2020, 2410
ErhI	CCWWGG	7 cut(s)	478, 578, 1271, 1280, 1642, 1939, 2448
FaeI	CATG	9 cut(s)	20, 482, 500, 638, 944, 1284, 1289, 1455, 2041
FalI	AAGNNNNNCTT	2 cut(s)	2329, 2361
FaqI	GGGAC	2 cut(s)	1548, 2147
FatI	CATG	9 cut(s)	16, 478, 496, 634, 940, 1280, 1285, 1451, 2037
FauI	CCCGC	1 cut(s)	1005
FauNDI	CATATG	1 cut(s)	293
FbaI	TGATCA	1 cut(s)	943
FblI	GTMKAC	2 cut(s)	1770, 1801
Fnu4HI	GCNGC	1 cut(s)	1491
FriOI	GRGCYC	3 cut(s)	825, 2020, 2410
Fsp4HI	GCNGC	1 cut(s)	1491
GlaI	GCGC	1 cut(s)	2033
GluI	GCNGC	1 cut(s)	1491
GsaI	CCCAGC	1 cut(s)	2195
GsuI	CTGGAG	3 cut(s)	1965, 1974, 2424
HaeII	RGCGCY	1 cut(s)	2035
HaeIII	GGCC	5 cut(s)	671, 1312, 1792, 1883, 2027
HapII	CCGG	5 cut(s)	1948, 2029, 2293, 2364, 2423
HhaI	GCGC	1 cut(s)	2034
Hin1II	CATG	9 cut(s)	20, 482, 500, 638, 944, 1284, 1289, 1455, 2041
Hin6I	GCGC	1 cut(s)	2032
HinP1I	GCGC	1 cut(s)	2032
HincII	GTYRAC	1 cut(s)	1084
HindII	GTYRAC	1 cut(s)	1084
HindIII	AAGCTT	1 cut(s)	1394
HpaII	CCGG	5 cut(s)	1948, 2029, 2293, 2364, 2423
HphI	GGTGA	9 cut(s)	1052, 1205, 1379, 1406, 2233, 2297, 2311, 2360, 2366
Hpy166II	GTNNAC	9 cut(s)	71, 436, 1056, 1084, 1414, 1771, 1802, 1866, 2050
Hpy8I	GTNNAC	9 cut(s)	71, 436, 1056, 1084, 1414, 1771, 1802, 1866, 2050
HpyAV	CCTTC	9 cut(s)	292, 1301, 1790, 1895, 1954, 2017, 2369, 2381, 2492
HpyCH4IV	ACGT	2 cut(s)	7, 429
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 254, 530, 993, 2024, 2153
HpySE526I	ACGT	2 cut(s)	7, 429
Hsp92II	CATG	9 cut(s)	20, 482, 500, 638, 944, 1284, 1289, 1455, 2041
HspAI	GCGC	1 cut(s)	2032
Kpn2I	TCCGGA	1 cut(s)	2292
Ksp22I	TGATCA	1 cut(s)	943
KspI	CCGCGG	1 cut(s)	1001
LguI	GCTCTTC	3 cut(s)	385, 802, 1255
LmnI	GCTCC	5 cut(s)	1276, 1487, 1717, 2153, 2405
Lsp1109I	GCAGC	1 cut(s)	1477
LweI	GCATC	8 cut(s)	130, 520, 709, 1570, 1581, 1711, 2278, 2298
MaeII	ACGT	2 cut(s)	7, 429
MaeIII	GTNAC	8 cut(s)	104, 613, 1367, 1722, 2221, 2339, 2354, 2366
MflI	RGATCY	4 cut(s)	793, 1105, 2093, 2326
MhlI	GDGCHC	6 cut(s)	325, 825, 2020, 2052, 2241, 2410
MlsI	TGGCCA	2 cut(s)	671, 1792
MluNI	TGGCCA	2 cut(s)	671, 1792
MlyI	GAGTC	5 cut(s)	66, 543, 1981, 2129, 2466
MmeI	TCCRAC	1 cut(s)	1120
Mox20I	TGGCCA	2 cut(s)	671, 1792
Mph1103I	ATGCAT	2 cut(s)	1585, 2291
MroI	TCCGGA	1 cut(s)	2292
MscI	TGGCCA	2 cut(s)	671, 1792
MseI	TTAA	5 cut(s)	27, 651, 915, 1692, 2244
MslI	CAYNNNNRTG	2 cut(s)	697, 1657
Msp20I	TGGCCA	2 cut(s)	671, 1792
MspA1I	CMGCKG	2 cut(s)	1000, 1465
MspI	CCGG	5 cut(s)	1948, 2029, 2293, 2364, 2423
MspR9I	CCNGG	8 cut(s)	657, 1245, 1577, 1949, 2029, 2352, 2364, 2424
Mva1269I	GAATGC	2 cut(s)	1909, 2291
MvaI	CCWGG	4 cut(s)	657, 1245, 1577, 2352
MvnI	CGCG	2 cut(s)	641, 1000
MwoI	GCNNNNNNNGC	6 cut(s)	10, 254, 530, 993, 2024, 2153
NciI	CCSGG	4 cut(s)	1949, 2029, 2364, 2424
NcoI	CCATGG	2 cut(s)	478, 1280
NdeI	CATATG	1 cut(s)	293
NlaIII	CATG	9 cut(s)	20, 482, 500, 638, 944, 1284, 1289, 1455, 2041
NlaIV	GGNNCC	7 cut(s)	214, 376, 795, 1004, 1278, 1946, 2467
NmeAIII	GCCGAG	2 cut(s)	54, 1628
NmuCI	GTSAC	6 cut(s)	1367, 1722, 2221, 2339, 2354, 2366
NsiI	ATGCAT	2 cut(s)	1585, 2291
NspI	RCATGY	1 cut(s)	638
NspV	TTCGAA	2 cut(s)	967, 2430
PaeR7I	CTCGAG	1 cut(s)	2454
PagI	TCATGA	1 cut(s)	2037
PciSI	GCTCTTC	3 cut(s)	385, 802, 1255
PcsI	WCGNNNNNNNCGW	1 cut(s)	256
PctI	GAATGC	2 cut(s)	1909, 2291
PfeI	GAWTC	7 cut(s)	629, 661, 1126, 1510, 1630, 2276, 2302
PfoI	TCCNGGA	1 cut(s)	1575
PkrI	GCNGC	1 cut(s)	1492
PleI	GAGTC	5 cut(s)	66, 543, 1981, 2129, 2465
PpsI	GAGTC	5 cut(s)	66, 543, 1981, 2129, 2465
Ppu21I	YACGTR	1 cut(s)	430
PshBI	ATTAAT	1 cut(s)	1692
Psp124BI	GAGCTC	3 cut(s)	825, 2020, 2410
Psp6I	CCWGG	4 cut(s)	655, 1243, 1575, 2350
PspEI	GGTNACC	3 cut(s)	613, 2354, 2366
PspFI	CCCAGC	1 cut(s)	2191
PspGI	CCWGG	4 cut(s)	655, 1243, 1575, 2350
PspN4I	GGNNCC	7 cut(s)	214, 376, 795, 1004, 1278, 1946, 2467
PspPI	GGNCC	6 cut(s)	197, 582, 1268, 1310, 1882, 2026
PspXI	VCTCGAGB	1 cut(s)	2454
PstNI	CAGNNNCTG	1 cut(s)	2003
PsuI	RGATCY	4 cut(s)	793, 1105, 2093, 2326
PvuII	CAGCTG	1 cut(s)	1465
RsaI	GTAC	8 cut(s)	189, 962, 1334, 1376, 1637, 1865, 1977, 2480
RsaNI	GTAC	8 cut(s)	188, 961, 1333, 1375, 1636, 1864, 1976, 2479
RseI	CAYNNNNRTG	2 cut(s)	697, 1657
SacI	GAGCTC	3 cut(s)	825, 2020, 2410
SacII	CCGCGG	1 cut(s)	1001
SapI	GCTCTTC	3 cut(s)	385, 802, 1255
SaqAI	TTAA	5 cut(s)	27, 651, 915, 1692, 2244
SatI	GCNGC	1 cut(s)	1491
Sau96I	GGNCC	6 cut(s)	197, 582, 1268, 1310, 1882, 2026
ScaI	AGTACT	3 cut(s)	962, 1376, 1637
SchI	GAGTC	5 cut(s)	66, 543, 1981, 2129, 2466
ScrFI	CCNGG	8 cut(s)	657, 1245, 1577, 1949, 2029, 2352, 2364, 2424
SduI	GDGCHC	6 cut(s)	325, 825, 2020, 2052, 2241, 2410
SfaNI	GCATC	8 cut(s)	130, 520, 709, 1570, 1581, 1711, 2278, 2298
SfcI	CTRYAG	1 cut(s)	316
Sfr274I	CTCGAG	1 cut(s)	2454
Sfr303I	CCGCGG	1 cut(s)	1001
SfuI	TTCGAA	2 cut(s)	967, 2430
SgrBI	CCGCGG	1 cut(s)	1001
SinI	GGWCC	3 cut(s)	197, 582, 1268
SlaI	CTCGAG	1 cut(s)	2454
SmiMI	CAYNNNNRTG	2 cut(s)	697, 1657
SmlI	CTYRAG	6 cut(s)	514, 543, 842, 1397, 2335, 2454
SmoI	CTYRAG	6 cut(s)	514, 543, 842, 1397, 2335, 2454
SsiI	CCGC	7 cut(s)	195, 641, 998, 1000, 1266, 1514, 2312
SstI	GAGCTC	3 cut(s)	825, 2020, 2410
StyD4I	CCNGG	8 cut(s)	655, 1243, 1575, 1947, 2027, 2350, 2362, 2422
StyI	CCWWGG	7 cut(s)	478, 578, 1271, 1280, 1642, 1939, 2448
TaiI	ACGT	2 cut(s)	10, 432
TaqI	TCGA	7 cut(s)	967, 1098, 1253, 1479, 2377, 2430, 2455
TatI	WGTACW	5 cut(s)	960, 1332, 1374, 1635, 1863
TfiI	GAWTC	7 cut(s)	629, 661, 1126, 1510, 1630, 2276, 2302
Tru1I	TTAA	5 cut(s)	27, 651, 915, 1692, 2244
Tru9I	TTAA	5 cut(s)	27, 651, 915, 1692, 2244
TseFI	GTSAC	6 cut(s)	1367, 1722, 2221, 2339, 2354, 2366
TseI	GCWGC	1 cut(s)	1490
Tsp45I	GTSAC	6 cut(s)	1367, 1722, 2221, 2339, 2354, 2366
TspDTI	ATGAA	8 cut(s)	5, 319, 474, 485, 971, 1606, 2026, 2091
VneI	GTGCAC	1 cut(s)	2048
VpaK11BI	GGWCC	3 cut(s)	197, 582, 1268
VspI	ATTAAT	1 cut(s)	1692
XapI	RAATTY	3 cut(s)	492, 680, 1612
XbaI	TCTAGA	2 cut(s)	238, 488
XceI	RCATGY	1 cut(s)	638
XcmI	CCANNNNNNNNNTGG	2 cut(s)	699, 1278
XhoI	CTCGAG	1 cut(s)	2454
XmiI	GTMKAC	2 cut(s)	1770, 1801
ZrmI	AGTACT	3 cut(s)	962, 1376, 1637
Zsp2I	ATGCAT	2 cut(s)	1585, 2291

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.