Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0014668

Physical Location & Seq

Genomic Coordinates Reverse (-)

62439381 .. 62443017

Gene Structure 3637 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG396400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2451 bp

ATGCCACGTCTGCTTCATGGGACACTTTATGCAACAATTTATGGGATTGATAAGCTACACAGTGGATGTGGACTCGGCTTATTGTGGAAGTCGCCTAAAAAATGTGTAGATCAAATCAAGAGGCTGGTACTGTGCGGACCTCAGATTTCTGGTTCCAAAATCTATGCAACAGTTGATCTAGACAAGGCTCGGGTGGCACGAACCCGAATGATAAACAATCCCCACAACCCCATATGGAAGGAAGATTTCCACATCTACAGTGCTCATTTCATCTCACACATTATCTTCACTGTCAAAGCTAATGATCCTATTGGTGCCACACTCATAGGAAGAGCTTATATACCAGTTGAAGATATCATAAAGGGCTATGTGGTGGACAGATGGGTTGAGATACTAGATGAAGAACACAATCCCATCCATGGAAACTCTAGAATTCATGTCAAGTTGCAATTCTCAAGTGTTGCAGAAGATGCTCATTGCCATTGGTCTCAGGGACTCAGAAGTCCTGACTATGAGGGTGTTCCTTGGACCTTTTTCAATCAAAGACAGGGTTGCAGGGTTACCCTCTACCAAGATTCACATGTCGCGGATGATTTTAATCCTGGGATTCCTATGGCCAATGGGGGATTCTACGAGCCACGAGGATGTTGGGAGGACATATTTGATGCAATCACTAATGCAAAACACTTGATCTACATAACTGGCTGGTCTGTCTCCACTGAAATAAACTTGCTGAGGGATCCACAAAGGCGAAAAGCAGGAGATGAGCTCACATTAGGACAGCTTCTCAAGAAAAAGGCTGATGAGGGTGTTCTAGTTCTCTTGCTTGTTTGGGATGACAGAACTTCTATTCCTCAATTTAAAAAGGATGGTCTGATGACAACACATGATCAAGAAACTGAGGAGTACTTTCGAAACACAAAAGTTCATTGCTTCCTTTGCCCGAGGAACCCTGATCTTGGTAGAAGCATTATTCAAGGTTTTGAGACTTCTACAATGTTCACTCACCATCAAAAAACAGTTGTAGTTGACAGTGAGATAGTCAGTGGAGATCCCTCGCAAAAAAGGAGGATTCTGAGCTTTGTTGGAGGCATTGATCTTTGTGATGGAAGATATGACACTCAGAAACACCCCCTATTTTCAACTCTAGGCACAACTCACCATAAGGACTTCCATCAGCCAAACTTTCCAGGCTCTTCGATTAGAAAAGGCGGTCCAAGAGAGCCATGGCATGATATCCATTGCAAACTTGAAGGGCCTGTTGCTTGGGATGTCTTGTACAACTTTGAGCAGAGGTGGAAAAAGCAAGTTGGTGACAAGTTCTTATTTTCACTAAGCAAGCTTGAGGAAATCACAGTTCACCCTTTACAGAACAAGTTATCAAATGACAGTGAAGCATGGAATGTTCAGCTGTTTCGTTCCATCGACAATGGAGCTGCTTTGGGATTTCCTGAGAATCCACTTGAAGCAACACAAAGGGGACTTGTGAGTGGGAAGAACAACATCATAGACAGAAGCATCCAGGATGCATATATCCATGCCATTCGCCGAGCAAAGAATTTCATTTACATAGAGAATCAGTACTTCCTTGGAAGCTCATTTGGGTGGAGATCAAAAGATATCAAGGATGAGGATATTAATGCTCTGCATCTTATCCCAAAGGAGCTGTCACTGAAGATTGTTAGTAAAATTGAAGCAGGGGAGAGGTTTGCTGTCTACATTGTTCTCCCAATGTGGCCAGAAGGTATACCCGAGAGTGGTTCTGTTCAGGCTATATTAGATTGGCAAAAAAGGACATTGGAGATGATGTACACTGATATCTCTGAGGCCCTTCAGAGAAAGGGTTTGAATGCAAACCCTAGAGACTATCTTACATTCTTCTGCCTTGGGAACCGGGAGACCGTGAAGGATGGAGAATATGTACCTCCAGAGACTCCAGAGCCAGACACTGATTACATCAGAGCTCAGAAGGCCCGGCGCTTCATGATTTATGTGCACTCAAAAATGATGATAGTTGATGATGAATACATTATCATTGGATCTGCCAACATAAACCAAAGGTCAATGGATGGGGCGAGGGACTCCGAAATTGCTATGGGAGCATTTCAGACTAATTATTTGGCTAATTCCACTGACCCAGCTAGGGGAGAGATATATGCTTTCAGGGTGACACTATGGTATGAGCACCTTAAAGTGCTTGACAGCTCTTTCTTGAATCCAGAATCAATGGAATGCATCCGGACGGTGAATCACCTTGCGGAAACAAACTGGGATCTTTTCTCAAGTGACACTTTTCCTGGTGACCTTCCCGGTCACCTTCTTCGATATCCTGTTGAGGTAAGCAAGACTGGAGCTCTAACAACACTGCCGGGGTTCGAACATTTCCCCGACACCAAGGCTCGAGTCTTTGGCACCAAGTCTGAGTACCTTCTTCCACTCCTTACCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0006629 GO:0006643 GO:0006950 GO:0006970 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0022622 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046466 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

816

Amino Acids

93.06

Weight (kDa)

6.24

Isoelectric Point (pI)

37.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	51 - 130	2.3e-09	C2 domain
PLDc	PF00614	663 - 688	3.4e-08	Phospholipase D Active site motif
PLDc_2	PF13091	663 - 694	4e-06	PLD-like domain
PLD_C	PF12357	734 - 806	1.3e-27	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0014668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29120
malus_domestica	MD15G1125000.v1.1
prunus_persica	Prupe.1G480500_v2.0.a1 Prupe.1G480500_v2.0.a1
pyrus_communis	pycom15g11260
rosa_chinensis	RchiOBHm_Chr6g0298001
rosa_laevigata	RLG00000011544
rosa_multiflora	Rmu_sc0002800.1_g000023
rosa_roxburghii	Rroxscaffold_7G00170010 Rroxscaffold_7G00178840
rosa_rugosa	Rorug06G0277800 Rorug06G0277900
rosa_samantha	Rh6AG388200 Rh6BG396400 Rh6CG402400 Rh6DG388600
rosa_wichuraiana	Rw6G033880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	501
AccB1I	GGYRCC	2 cut(s)	314, 2411
AccI	GTMKAC	2 cut(s)	1716, 1747
AccII	CGCG	1 cut(s)	587
AccIII	TCCGGA	1 cut(s)	2238
AciI	CCGC	4 cut(s)	135, 587, 1212, 2258
AclWI	GGATC	6 cut(s)	299, 734, 747, 1046, 2047, 2280
AcoI	YGGCCR	2 cut(s)	615, 1736
AcsI	RAATTY	2 cut(s)	432, 1558
AcuI	CTGAAG	2 cut(s)	1694, 1817
AfaI	GTAC	7 cut(s)	129, 908, 1280, 1583, 1811, 1923, 2426
AfiI	CCNNNNNNNGG	5 cut(s)	419, 959, 1757, 2143, 2144
AflIII	ACRYGT	1 cut(s)	580
AgsI	TTSAA	9 cut(s)	350, 538, 977, 1143, 1253, 1466, 1694, 1849, 2215
AjiI	CACGTC	1 cut(s)	8
AjnI	CCWGG	4 cut(s)	601, 1189, 1521, 2296
AjuI	GAANNNNNNNTTGG	2 cut(s)	611, 643
AloI	GAACNNNNNNTCC	2 cut(s)	835, 867
Alw21I	GWGCWC	6 cut(s)	265, 771, 1966, 1998, 2187, 2356
Alw26I	GTCTC	6 cut(s)	492, 718, 980, 1857, 1892, 1925
Alw44I	GTGCAC	1 cut(s)	1994
AlwI	GGATC	6 cut(s)	299, 734, 747, 1046, 2047, 2280
AlwNI	CAGNNNCTG	1 cut(s)	1949
Ama87I	CYCGRG	4 cut(s)	189, 943, 1751, 2400
Aor13HI	TCCGGA	1 cut(s)	2238
AoxI	GGCC	5 cut(s)	615, 1256, 1736, 1827, 1971
ApaLI	GTGCAC	1 cut(s)	1994
ApeKI	GCWGC	1 cut(s)	1436
ApoI	RAATTY	2 cut(s)	432, 1558
ArsI	GACNNNNNNTTYG	4 cut(s)	1652, 1684, 2101, 2133
AseI	ATTAAT	1 cut(s)	1638
AspLEI	GCGC	1 cut(s)	1980
AspS9I	GGNCC	6 cut(s)	137, 528, 1214, 1256, 1828, 1972
AsuC2I	CCSGG	4 cut(s)	1895, 1975, 2310, 2370
AsuHPI	GGTGA	9 cut(s)	998, 1151, 1325, 1352, 2179, 2243, 2257, 2306, 2312
AsuII	TTCGAA	2 cut(s)	913, 2376
AvaI	CYCGRG	4 cut(s)	189, 943, 1751, 2400
AvaII	GGWCC	3 cut(s)	137, 528, 1214
BaeGI	GKGCMC	1 cut(s)	1998
BalI	TGGCCA	2 cut(s)	617, 1738
BamHI	GGATCC	1 cut(s)	739
BanI	GGYRCC	2 cut(s)	314, 2411
BanII	GRGCYC	3 cut(s)	771, 1966, 2356
BauI	CACGAG	1 cut(s)	639
Bbv12I	GWGCWC	6 cut(s)	265, 771, 1966, 1998, 2187, 2356
BbvCI	CCTCAGC	1 cut(s)	734
BbvI	GCAGC	1 cut(s)	1423
BccI	CCATC	9 cut(s)	375, 422, 863, 1017, 1100, 1182, 1430, 1904, 2063
BciT130I	CCWGG	4 cut(s)	603, 1191, 1523, 2298
BclI	TGATCA	1 cut(s)	889
BcnI	CCSGG	4 cut(s)	1895, 1975, 2310, 2370
BcoDI	GTCTC	6 cut(s)	492, 718, 980, 1857, 1892, 1925
BfaI	CTAG	8 cut(s)	179, 395, 429, 815, 1148, 1860, 2142, 2449
BfmI	CTRYAG	1 cut(s)	256
BfoI	RGCGCY	1 cut(s)	1981
BisI	GCNGC	1 cut(s)	1437
BlsI	GCNGC	1 cut(s)	1438
BmcAI	AGTACT	2 cut(s)	908, 1583
Bme1390I	CCNGG	8 cut(s)	603, 1191, 1523, 1895, 1975, 2298, 2310, 2370
Bme18I	GGWCC	3 cut(s)	137, 528, 1214
BmeT110I	CYCGRG	4 cut(s)	189, 943, 1751, 2400
BmgBI	CACGTC	1 cut(s)	8
BmgT120I	GGNCC	6 cut(s)	137, 528, 1214, 1256, 1828, 1972
BmiI	GGNNCC	6 cut(s)	154, 316, 741, 950, 1892, 2413
BmrFI	CCNGG	8 cut(s)	603, 1191, 1523, 1895, 1975, 2298, 2310, 2370
BmrI	ACTGGG	1 cut(s)	2278
BmsI	GCATC	6 cut(s)	460, 655, 1516, 1527, 1657, 2244
BmuI	ACTGGG	1 cut(s)	2278
BplI	GAGNNNNNCTC	2 cut(s)	753, 785
BpmI	CTGGAG	3 cut(s)	1911, 1920, 2370
Bpu10I	CCTNAGC	1 cut(s)	734
Bpu14I	TTCGAA	2 cut(s)	913, 2376
BpuEI	CTTGAG	4 cut(s)	439, 773, 1364, 2266
BpuMI	CCSGG	4 cut(s)	1895, 1975, 2310, 2370
BsaBI	GATNNNNATC	1 cut(s)	597
BsaI	GGTCTC	2 cut(s)	492, 1892
BsaJI	CCNNGG	9 cut(s)	418, 524, 602, 944, 1226, 1588, 1885, 2369, 2394
BsaWI	WCCGGW	1 cut(s)	2238
BsaXI	ACNNNNNCTCC	4 cut(s)	1793, 1823, 1905, 1935
Bsc4I	CCNNNNNNNGG	5 cut(s)	419, 959, 1757, 2143, 2144
Bse1I	ACTGG	4 cut(s)	344, 706, 2273, 2353
Bse3DI	GCAATG	3 cut(s)	475, 928, 1240
Bse8I	GATNNNNATC	1 cut(s)	597
BseAI	TCCGGA	1 cut(s)	2238
BseBI	CCWGG	4 cut(s)	603, 1191, 1523, 2298
BseDI	CCNNGG	9 cut(s)	418, 524, 602, 944, 1226, 1588, 1885, 2369, 2394
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	5 cut(s)	419, 959, 1757, 2143, 2144
BseMI	GCAATG	3 cut(s)	475, 928, 1240
BseNI	ACTGG	4 cut(s)	344, 706, 2273, 2353
BseRI	GAGGAG	1 cut(s)	917
BseSI	GKGCMC	1 cut(s)	1998
BseXI	GCAGC	1 cut(s)	1423
BseYI	CCCAGC	1 cut(s)	2137
Bsh1236I	CGCG	1 cut(s)	587
BshFI	GGCC	5 cut(s)	617, 1258, 1738, 1829, 1973
BshNI	GGYRCC	2 cut(s)	314, 2411
BsiHKAI	GWGCWC	6 cut(s)	265, 771, 1966, 1998, 2187, 2356
BsiHKCI	CYCGRG	4 cut(s)	189, 943, 1751, 2400
BsiSI	CCGG	5 cut(s)	1894, 1975, 2239, 2310, 2369
BslFI	GGGAC	4 cut(s)	34, 507, 1494, 2093
BslI	CCNNNNNNNGG	5 cut(s)	419, 959, 1757, 2143, 2144
BsmAI	GTCTC	6 cut(s)	492, 718, 980, 1857, 1892, 1925
BsmFI	GGGAC	4 cut(s)	34, 507, 1494, 2093
BsmI	GAATGC	2 cut(s)	1855, 2237
BsnI	GGCC	5 cut(s)	617, 1258, 1738, 1829, 1973
Bso31I	GGTCTC	2 cut(s)	492, 1892
BsoBI	CYCGRG	4 cut(s)	189, 943, 1751, 2400
Bsp119I	TTCGAA	2 cut(s)	913, 2376
Bsp1286I	GDGCHC	6 cut(s)	265, 771, 1966, 1998, 2187, 2356
Bsp13I	TCCGGA	1 cut(s)	2238
Bsp1407I	TGTACA	2 cut(s)	1278, 1809
Bsp19I	CCATGG	2 cut(s)	418, 1226
BspACI	CCGC	4 cut(s)	135, 587, 1212, 2258
BspANI	GGCC	5 cut(s)	617, 1258, 1738, 1829, 1973
BspEI	TCCGGA	1 cut(s)	2238
BspFNI	CGCG	1 cut(s)	587
BspHI	TCATGA	1 cut(s)	1983
BspLI	GGNNCC	6 cut(s)	154, 316, 741, 950, 1892, 2413
BspPI	GGATC	6 cut(s)	299, 734, 747, 1046, 2047, 2280
BspQI	GCTCTTC	2 cut(s)	325, 1201
BspT104I	TTCGAA	2 cut(s)	913, 2376
BspT107I	GGYRCC	2 cut(s)	314, 2411
BspTNI	GGTCTC	2 cut(s)	492, 1892
BsrDI	GCAATG	3 cut(s)	475, 928, 1240
BsrGI	TGTACA	2 cut(s)	1278, 1809
BsrI	ACTGG	4 cut(s)	344, 706, 2273, 2353
BssECI	CCNNGG	9 cut(s)	418, 524, 602, 944, 1226, 1588, 1885, 2369, 2394
BssNAI	GTATAC	1 cut(s)	1748
BssSI	CACGAG	1 cut(s)	639
BssT1I	CCWWGG	6 cut(s)	418, 524, 1226, 1588, 1885, 2394
Bst1107I	GTATAC	1 cut(s)	1748
Bst2BI	CACGAG	1 cut(s)	639
Bst2UI	CCWGG	4 cut(s)	603, 1191, 1523, 2298
Bst6I	CTCTTC	2 cut(s)	325, 1201
BstAPI	GCANNNNNTGC	1 cut(s)	470
BstAUI	TGTACA	2 cut(s)	1278, 1809
BstBI	TTCGAA	2 cut(s)	913, 2376
BstC8I	GCNNGC	1 cut(s)	1340
BstDSI	CCRYGG	2 cut(s)	418, 1226
BstEII	GGTNACC	3 cut(s)	559, 2300, 2312
BstFNI	CGCG	1 cut(s)	587
BstH2I	RGCGCY	1 cut(s)	1981
BstHHI	GCGC	1 cut(s)	1980
BstMAI	GTCTC	6 cut(s)	492, 718, 980, 1857, 1892, 1925
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 194, 470, 939, 1970, 2099
BstNI	CCWGG	4 cut(s)	603, 1191, 1523, 2298
BstNSI	RCATGY	1 cut(s)	584
BstPI	GGTNACC	3 cut(s)	559, 2300, 2312
BstSCI	CCNGG	8 cut(s)	601, 1189, 1521, 1893, 1973, 2296, 2308, 2368
BstSFI	CTRYAG	1 cut(s)	256
BstSLI	GKGCMC	1 cut(s)	1998
BstUI	CGCG	1 cut(s)	587
BstV1I	GCAGC	1 cut(s)	1423
BstX2I	RGATCY	4 cut(s)	739, 1051, 2039, 2272
BstYI	RGATCY	4 cut(s)	739, 1051, 2039, 2272
BstZ17I	GTATAC	1 cut(s)	1748
BsuRI	GGCC	5 cut(s)	617, 1258, 1738, 1829, 1973
BtgI	CCRYGG	2 cut(s)	418, 1226
BtrI	CACGTC	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	2363
Cac8I	GCNNGC	1 cut(s)	1340
CaiI	CAGNNNCTG	1 cut(s)	1949
CciI	TCATGA	1 cut(s)	1983
CfoI	GCGC	1 cut(s)	1980
Cfr13I	GGNCC	6 cut(s)	137, 528, 1214, 1256, 1828, 1972
Csp6I	GTAC	7 cut(s)	128, 907, 1279, 1582, 1810, 1922, 2425
CviQI	GTAC	7 cut(s)	128, 907, 1279, 1582, 1810, 1922, 2425
DraI	TTTAAA	1 cut(s)	862
DrdI	GACNNNNNNGTC	1 cut(s)	501
DseDI	GACNNNNNNGTC	1 cut(s)	501
EaeI	YGGCCR	2 cut(s)	615, 1736
Eam1104I	CTCTTC	2 cut(s)	325, 1201
EarI	CTCTTC	2 cut(s)	325, 1201
Ecl136II	GAGCTC	3 cut(s)	769, 1964, 2354
Eco130I	CCWWGG	6 cut(s)	418, 524, 1226, 1588, 1885, 2394
Eco24I	GRGCYC	3 cut(s)	771, 1966, 2356
Eco31I	GGTCTC	2 cut(s)	492, 1892
Eco32I	GATATC	5 cut(s)	355, 1237, 1621, 1819, 2327
Eco47I	GGWCC	3 cut(s)	137, 528, 1214
Eco53kI	GAGCTC	3 cut(s)	769, 1964, 2354
Eco57I	CTGAAG	2 cut(s)	1694, 1817
Eco88I	CYCGRG	4 cut(s)	189, 943, 1751, 2400
Eco91I	GGTNACC	3 cut(s)	559, 2300, 2312
EcoICRI	GAGCTC	3 cut(s)	769, 1964, 2354
EcoO109I	RGGNCCY	2 cut(s)	1256, 1828
EcoO65I	GGTNACC	3 cut(s)	559, 2300, 2312
EcoRI	GAATTC	1 cut(s)	432
EcoRII	CCWGG	4 cut(s)	601, 1189, 1521, 2296
EcoRV	GATATC	5 cut(s)	355, 1237, 1621, 1819, 2327
EcoT14I	CCWWGG	6 cut(s)	418, 524, 1226, 1588, 1885, 2394
EcoT22I	ATGCAT	2 cut(s)	1531, 2237
EcoT38I	GRGCYC	3 cut(s)	771, 1966, 2356
ErhI	CCWWGG	6 cut(s)	418, 524, 1226, 1588, 1885, 2394
FalI	AAGNNNNNCTT	2 cut(s)	2275, 2307
FaqI	GGGAC	4 cut(s)	34, 507, 1494, 2093
FauNDI	CATATG	1 cut(s)	233
FbaI	TGATCA	1 cut(s)	889
FblI	GTMKAC	2 cut(s)	1716, 1747
Fnu4HI	GCNGC	1 cut(s)	1437
FriOI	GRGCYC	3 cut(s)	771, 1966, 2356
Fsp4HI	GCNGC	1 cut(s)	1437
FspBI	CTAG	8 cut(s)	179, 395, 429, 815, 1148, 1860, 2142, 2449
GlaI	GCGC	1 cut(s)	1979
GluI	GCNGC	1 cut(s)	1437
GsaI	CCCAGC	1 cut(s)	2141
GsuI	CTGGAG	3 cut(s)	1911, 1920, 2370
HaeII	RGCGCY	1 cut(s)	1981
HaeIII	GGCC	5 cut(s)	617, 1258, 1738, 1829, 1973
HapII	CCGG	5 cut(s)	1894, 1975, 2239, 2310, 2369
HhaI	GCGC	1 cut(s)	1980
Hin6I	GCGC	1 cut(s)	1978
HinP1I	GCGC	1 cut(s)	1978
HincII	GTYRAC	1 cut(s)	1030
HindII	GTYRAC	1 cut(s)	1030
HindIII	AAGCTT	1 cut(s)	1340
HpaII	CCGG	5 cut(s)	1894, 1975, 2239, 2310, 2369
HphI	GGTGA	9 cut(s)	998, 1151, 1325, 1352, 2179, 2243, 2257, 2306, 2312
Hpy166II	GTNNAC	9 cut(s)	71, 376, 1002, 1030, 1360, 1717, 1748, 1812, 1996
Hpy8I	GTNNAC	9 cut(s)	71, 376, 1002, 1030, 1360, 1717, 1748, 1812, 1996
HpyAV	CCTTC	9 cut(s)	232, 1247, 1736, 1841, 1900, 1963, 2315, 2327, 2438
HpyCH4IV	ACGT	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 194, 470, 939, 1970, 2099
HpySE526I	ACGT	1 cut(s)	7
HspAI	GCGC	1 cut(s)	1978
Kpn2I	TCCGGA	1 cut(s)	2238
Ksp22I	TGATCA	1 cut(s)	889
LguI	GCTCTTC	2 cut(s)	325, 1201
LmnI	GCTCC	4 cut(s)	1433, 1663, 2099, 2351
Lsp1109I	GCAGC	1 cut(s)	1423
LweI	GCATC	6 cut(s)	460, 655, 1516, 1527, 1657, 2244
MaeI	CTAG	8 cut(s)	179, 395, 429, 815, 1148, 1860, 2142, 2449
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	7 cut(s)	559, 1313, 1668, 2167, 2285, 2300, 2312
MflI	RGATCY	4 cut(s)	739, 1051, 2039, 2272
MhlI	GDGCHC	6 cut(s)	265, 771, 1966, 1998, 2187, 2356
MlsI	TGGCCA	2 cut(s)	617, 1738
MluCI	AATT	9 cut(s)	36, 432, 449, 857, 1558, 1689, 2088, 2113, 2125
MluNI	TGGCCA	2 cut(s)	617, 1738
MlyI	GAGTC	5 cut(s)	66, 489, 1927, 2075, 2412
MmeI	TCCRAC	1 cut(s)	1066
Mox20I	TGGCCA	2 cut(s)	617, 1738
Mph1103I	ATGCAT	2 cut(s)	1531, 2237
MroI	TCCGGA	1 cut(s)	2238
MscI	TGGCCA	2 cut(s)	617, 1738
MseI	TTAA	4 cut(s)	597, 861, 1638, 2190
MslI	CAYNNNNRTG	2 cut(s)	643, 1603
Msp20I	TGGCCA	2 cut(s)	617, 1738
MspA1I	CMGCKG	1 cut(s)	1411
MspI	CCGG	5 cut(s)	1894, 1975, 2239, 2310, 2369
MspR9I	CCNGG	8 cut(s)	603, 1191, 1523, 1895, 1975, 2298, 2310, 2370
Mva1269I	GAATGC	2 cut(s)	1855, 2237
MvaI	CCWGG	4 cut(s)	603, 1191, 1523, 2298
MvnI	CGCG	1 cut(s)	587
MwoI	GCNNNNNNNGC	6 cut(s)	10, 194, 470, 939, 1970, 2099
NciI	CCSGG	4 cut(s)	1895, 1975, 2310, 2370
NcoI	CCATGG	2 cut(s)	418, 1226
NdeI	CATATG	1 cut(s)	233
NlaIV	GGNNCC	6 cut(s)	154, 316, 741, 950, 1892, 2413
NmeAIII	GCCGAG	2 cut(s)	54, 1574
NmuCI	GTSAC	6 cut(s)	1313, 1668, 2167, 2285, 2300, 2312
NsiI	ATGCAT	2 cut(s)	1531, 2237
NspI	RCATGY	1 cut(s)	584
NspV	TTCGAA	2 cut(s)	913, 2376
PaeR7I	CTCGAG	1 cut(s)	2400
PagI	TCATGA	1 cut(s)	1983
PciI	ACATGT	1 cut(s)	580
PciSI	GCTCTTC	2 cut(s)	325, 1201
PcsI	WCGNNNNNNNCGW	1 cut(s)	196
PctI	GAATGC	2 cut(s)	1855, 2237
PfeI	GAWTC	9 cut(s)	575, 607, 627, 1072, 1456, 1576, 2215, 2222, 2248
PfoI	TCCNGGA	1 cut(s)	1521
PkrI	GCNGC	1 cut(s)	1438
PleI	GAGTC	5 cut(s)	66, 489, 1927, 2075, 2411
PpsI	GAGTC	5 cut(s)	66, 489, 1927, 2075, 2411
PscI	ACATGT	1 cut(s)	580
PshBI	ATTAAT	1 cut(s)	1638
Psp124BI	GAGCTC	3 cut(s)	771, 1966, 2356
Psp6I	CCWGG	4 cut(s)	601, 1189, 1521, 2296
PspEI	GGTNACC	3 cut(s)	559, 2300, 2312
PspFI	CCCAGC	1 cut(s)	2137
PspGI	CCWGG	4 cut(s)	601, 1189, 1521, 2296
PspN4I	GGNNCC	6 cut(s)	154, 316, 741, 950, 1892, 2413
PspPI	GGNCC	6 cut(s)	137, 528, 1214, 1256, 1828, 1972
PspXI	VCTCGAGB	1 cut(s)	2400
PstNI	CAGNNNCTG	1 cut(s)	1949
PsuI	RGATCY	4 cut(s)	739, 1051, 2039, 2272
PvuII	CAGCTG	1 cut(s)	1411
RsaI	GTAC	7 cut(s)	129, 908, 1280, 1583, 1811, 1923, 2426
RsaNI	GTAC	7 cut(s)	128, 907, 1279, 1582, 1810, 1922, 2425
RseI	CAYNNNNRTG	2 cut(s)	643, 1603
SacI	GAGCTC	3 cut(s)	771, 1966, 2356
SapI	GCTCTTC	2 cut(s)	325, 1201
SaqAI	TTAA	4 cut(s)	597, 861, 1638, 2190
SatI	GCNGC	1 cut(s)	1437
Sau96I	GGNCC	6 cut(s)	137, 528, 1214, 1256, 1828, 1972
ScaI	AGTACT	2 cut(s)	908, 1583
SchI	GAGTC	5 cut(s)	66, 489, 1927, 2075, 2412
ScrFI	CCNGG	8 cut(s)	603, 1191, 1523, 1895, 1975, 2298, 2310, 2370
SduI	GDGCHC	6 cut(s)	265, 771, 1966, 1998, 2187, 2356
SfaNI	GCATC	6 cut(s)	460, 655, 1516, 1527, 1657, 2244
SfcI	CTRYAG	1 cut(s)	256
Sfr274I	CTCGAG	1 cut(s)	2400
SfuI	TTCGAA	2 cut(s)	913, 2376
SinI	GGWCC	3 cut(s)	137, 528, 1214
SlaI	CTCGAG	1 cut(s)	2400
SmiMI	CAYNNNNRTG	2 cut(s)	643, 1603
SmlI	CTYRAG	5 cut(s)	454, 788, 1343, 2281, 2400
SmoI	CTYRAG	5 cut(s)	454, 788, 1343, 2281, 2400
Sse9I	AATT	9 cut(s)	36, 432, 449, 857, 1558, 1689, 2088, 2113, 2125
SsiI	CCGC	4 cut(s)	135, 587, 1212, 2258
SspMI	CTAG	8 cut(s)	179, 395, 429, 815, 1148, 1860, 2142, 2449
SstI	GAGCTC	3 cut(s)	771, 1966, 2356
StyD4I	CCNGG	8 cut(s)	601, 1189, 1521, 1893, 1973, 2296, 2308, 2368
StyI	CCWWGG	6 cut(s)	418, 524, 1226, 1588, 1885, 2394
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	6 cut(s)	913, 1199, 1425, 2323, 2376, 2401
TasI	AATT	9 cut(s)	36, 432, 449, 857, 1558, 1689, 2088, 2113, 2125
TatI	WGTACW	4 cut(s)	906, 1278, 1581, 1809
TfiI	GAWTC	9 cut(s)	575, 607, 627, 1072, 1456, 1576, 2215, 2222, 2248
Tru1I	TTAA	4 cut(s)	597, 861, 1638, 2190
Tru9I	TTAA	4 cut(s)	597, 861, 1638, 2190
TseFI	GTSAC	6 cut(s)	1313, 1668, 2167, 2285, 2300, 2312
TseI	GCWGC	1 cut(s)	1436
Tsp45I	GTSAC	6 cut(s)	1313, 1668, 2167, 2285, 2300, 2312
TspDTI	ATGAA	8 cut(s)	5, 259, 414, 425, 917, 1552, 1972, 2037
VneI	GTGCAC	1 cut(s)	1994
VpaK11BI	GGWCC	3 cut(s)	137, 528, 1214
VspI	ATTAAT	1 cut(s)	1638
XapI	RAATTY	2 cut(s)	432, 1558
XbaI	TCTAGA	2 cut(s)	178, 428
XceI	RCATGY	1 cut(s)	584
XcmI	CCANNNNNNNNNTGG	2 cut(s)	645, 1224
XhoI	CTCGAG	1 cut(s)	2400
XmiI	GTMKAC	2 cut(s)	1716, 1747
XspI	CTAG	8 cut(s)	179, 395, 429, 815, 1148, 1860, 2142, 2449
ZrmI	AGTACT	2 cut(s)	908, 1583
Zsp2I	ATGCAT	2 cut(s)	1531, 2237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.