Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014668

Physical Location & Seq

Genomic Coordinates Forward (+)

42546547 .. 42547115

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0277800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCCTGCACAATCGACTTTCGCTGCCTAGACGAAGGCTTCGGCGGCAAAACCTACAAGCGCAAGCAGAACCCCGAAGCCGCTGACGACGACGAAGATGTCGCCATGGAAATCGACGCCACCAACCCACCTCCGGCGAAGCAATCTGTGGTGTCCTTCTCGGACAATCCGGACAAACCAGTCGTGATCGCCGGGAAGGTCTCCGGGCGAAAGTGGAAGCAGACGCGGAAGCAGAGGTCGTCGACGGTTCAGGTAAGTCGGAAGGGGACGACATTCGAGGAGAGGGAGAAGAACAAGTCGGTGAAGAAGGCGTACAAGGAGAGAATGGCGGAGCTGAAGGGGCAGATTAAGAGGAACAAGGAGGAGAAGAAGAGGAAGAGGGAGGAAAGGGAGAAGAAGAAGGAGAATATTCTTCCGGAGGAGATGATCAAGAGGAACAATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0006629 GO:0006643 GO:0006950 GO:0006970 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0022622 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046466 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

148

Amino Acids

17.16

Weight (kDa)

9.76

Isoelectric Point (pI)

66.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cgr1	PF03879	65 - 136	8.8e-06	Cgr1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0014668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29120
malus_domestica	MD15G1125000.v1.1
prunus_persica	Prupe.1G480500_v2.0.a1 Prupe.1G480500_v2.0.a1
pyrus_communis	pycom15g11260
rosa_chinensis	RchiOBHm_Chr6g0298001
rosa_laevigata	RLG00000011544
rosa_multiflora	Rmu_sc0002800.1_g000023
rosa_roxburghii	Rroxscaffold_7G00170010 Rroxscaffold_7G00178840
rosa_rugosa	Rorug06G0277800 Rorug06G0277900
rosa_samantha	Rh6AG388200 Rh6BG396400 Rh6CG402400 Rh6DG388600
rosa_wichuraiana	Rw6G033880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	98, 179
AccI	GTMKAC	1 cut(s)	242
AccII	CGCG	1 cut(s)	226
AccIII	TCCGGA	2 cut(s)	169, 415
AciI	CCGC	4 cut(s)	45, 81, 226, 329
AcuI	CTGAAG	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	117
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	1 cut(s)	133
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	205
Aor13HI	TCCGGA	2 cut(s)	169, 415
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	24
ArsI	GACNNNNNNTTYG	2 cut(s)	23, 55
AspLEI	GCGC	1 cut(s)	63
AsuC2I	CCSGG	2 cut(s)	193, 205
AsuHPI	GGTGA	1 cut(s)	313
BarI	GAAGNNNNNNTAC	2 cut(s)	296, 328
BbvI	GCAGC	1 cut(s)	11
BclI	TGATCA	1 cut(s)	426
BcnI	CCSGG	2 cut(s)	193, 205
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	1 cut(s)	29
BisI	GCNGC	3 cut(s)	25, 46, 81
BlsI	GCNGC	3 cut(s)	26, 47, 82
Bme1390I	CCNGG	2 cut(s)	193, 205
BmrFI	CCNGG	2 cut(s)	193, 205
BpuMI	CCSGG	2 cut(s)	193, 205
BsaHI	GRCGYC	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	2 cut(s)	169, 415
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	179
BseAI	TCCGGA	2 cut(s)	169, 415
BseDI	CCNNGG	1 cut(s)	105
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	3 cut(s)	293, 377, 434
BseXI	GCAGC	1 cut(s)	11
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	5 cut(s)	134, 170, 192, 204, 416
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	205
Bsp13I	TCCGGA	2 cut(s)	169, 415
Bsp143I	GATC	2 cut(s)	186, 426
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	4 cut(s)	45, 81, 226, 329
BspANI	GGCC	1 cut(s)	5
BspEI	TCCGGA	2 cut(s)	169, 415
BspFNI	CGCG	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	205
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	2 cut(s)	186, 426
BssNI	GRCGYC	1 cut(s)	117
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	2 cut(s)	365, 371
BstACI	GRCGYC	1 cut(s)	117
BstC8I	GCNNGC	2 cut(s)	7, 65
BstDSI	CCRYGG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	226
BstHHI	GCGC	1 cut(s)	63
BstKTI	GATC	2 cut(s)	189, 429
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	2 cut(s)	186, 426
BstMWI	GCNNNNNNNGC	2 cut(s)	45, 340
BstSCI	CCNGG	2 cut(s)	191, 203
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	11
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	105
Cac8I	GCNNGC	2 cut(s)	7, 65
CfoI	GCGC	1 cut(s)	63
CseI	GACGC	2 cut(s)	125, 232
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	4 cut(s)	5, 39, 80, 334
CviKI_1	RGCY	4 cut(s)	5, 39, 80, 334
CviQI	GTAC	1 cut(s)	313
DpnI	GATC	2 cut(s)	188, 428
DpnII	GATC	2 cut(s)	186, 426
DrdI	GACNNNNNNGTC	2 cut(s)	98, 179
DseDI	GACNNNNNNGTC	2 cut(s)	98, 179
Eam1104I	CTCTTC	2 cut(s)	365, 371
EarI	CTCTTC	2 cut(s)	365, 371
EciI	GGCGGA	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	105
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	1 cut(s)	109
FaiI	YATR	1 cut(s)	107
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	426
FblI	GTMKAC	1 cut(s)	242
Fnu4HI	GCNGC	3 cut(s)	25, 46, 81
Fsp4HI	GCNGC	3 cut(s)	25, 46, 81
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	3 cut(s)	25, 46, 81
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	5 cut(s)	134, 170, 192, 204, 416
HgaI	GACGC	2 cut(s)	125, 232
HhaI	GCGC	1 cut(s)	63
Hin1I	GRCGYC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	109
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HpaII	CCGG	5 cut(s)	134, 170, 192, 204, 416
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	243
Hpy188I	TCNGA	2 cut(s)	163, 261
Hpy188III	TCNNGA	4 cut(s)	170, 184, 416, 430
Hpy8I	GTNNAC	1 cut(s)	243
Hpy99I	CGWCG	5 cut(s)	92, 95, 119, 244, 247
HpyAV	CCTTC	7 cut(s)	29, 166, 190, 256, 301, 331, 394
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	2 cut(s)	45, 340
Hsp92I	GRCGYC	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	109
HspAI	GCGC	1 cut(s)	61
Kpn2I	TCCGGA	2 cut(s)	169, 415
Ksp22I	TGATCA	1 cut(s)	426
Kzo9I	GATC	2 cut(s)	186, 426
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	8 cut(s)	19, 147, 183, 192, 205, 217, 236, 429
Lsp1109I	GCAGC	1 cut(s)	11
MaeI	CTAG	1 cut(s)	29
MalI	GATC	2 cut(s)	188, 428
MboI	GATC	2 cut(s)	186, 426
MboII	GAAGA	9 cut(s)	107, 301, 316, 379, 382, 388, 404, 406, 409
MmeI	TCCRAC	1 cut(s)	239
MroI	TCCGGA	2 cut(s)	169, 415
MseI	TTAA	1 cut(s)	348
MspA1I	CMGCKG	1 cut(s)	83
MspI	CCGG	5 cut(s)	134, 170, 192, 204, 416
MspR9I	CCNGG	2 cut(s)	193, 205
MvnI	CGCG	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	45, 340
NciI	CCSGG	2 cut(s)	193, 205
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	2 cut(s)	186, 426
NlaIII	CATG	1 cut(s)	109
PkrI	GCNGC	3 cut(s)	26, 47, 82
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SalI	GTCGAC	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	348
SatI	GCNGC	3 cut(s)	25, 46, 81
Sau3AI	GATC	2 cut(s)	186, 426
ScrFI	CCNGG	2 cut(s)	193, 205
SetI	ASST	6 cut(s)	56, 133, 201, 239, 255, 336
SgrDI	CGTCGACG	1 cut(s)	241
SsiI	CCGC	4 cut(s)	45, 81, 226, 329
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	191, 203
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	1 cut(s)	247
TaqI	TCGA	4 cut(s)	15, 114, 242, 276
TauI	GCSGC	2 cut(s)	48, 83
Tru1I	TTAA	1 cut(s)	348
Tru9I	TTAA	1 cut(s)	348
TseI	GCWGC	1 cut(s)	24
XmiI	GTMKAC	1 cut(s)	242
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.