Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0014668

Physical Location & Seq

Genomic Coordinates Reverse (-)

42550749 .. 42552152

Gene Structure 1404 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0277900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGCCACACCACCCTCACCCACCGCCTCCCCCTCGGCCTCCCCGGTCTCCACCACCGCCACCAAGAAGCCCCACCCGATCCCCTGGACCCACGAAGAAACCGTCCACCTAATCCAGGCCTACCAGGACAAATGGTACGAGCTCCGCCGAGGTCAGCTCAAGGCCAGCCAATGGGAGGAGGTCGCCGTCACCGTCGCCGCCCGCTGCGGCTACGACTACACCGAGCCCTCCAAGACAGCCACCCAGTGCCGCCACAAGATGGAGAAGCTCCGCCAGCGTCACCGCTCCGTCAAGAAGCGCCTCGGCCTCAGCTTCGGGTCGGGTTGGCCCTACTTCGATCTCATGGAGCGGCTCGAACAGGGCCCCATGCCCATCTCCGCCAGACGGCCGTACCAGGAGGAGGAGGAGGACGACGAAGAAGCCGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCGGAGGATCGTGACGGCGAAGAAGAAGAGGTTGATGAGGAGGAAGAAGACAACTACAGGAAGTTGCAGAGTCTTGATTACATTCTGAGGAGACCTGCAATTGTGAACAGATTTTCTTCTGGAGCAAAAGAGGGCCACTTTCGGGACTCGGCGGCGGCGAAAAGGCCGAGGGAGGCCGCCGCAGACGACGACGGCTACTACGGCGATGTGGTGGATGGGCAGAGAGGAACAGAGATGGTGGTGGAGCTGGCGACGGAGATAAGGGGGTTTGCGAAAAGGCTGATTGGGGTGGAGAATATGAGGATGGAGATCATGAGGGAAACGGAGAGGTGTAGATTAGAGATGGAGAATAAACGGATTGATATGATTCTTCAATCGCAGCGCAAAATTGTTGATTCCATCGACAGGGCTTTTGGGCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0006629 GO:0006643 GO:0006950 GO:0006970 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0022622 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046466 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

292

Amino Acids

33.81

Weight (kDa)

4.87

Isoelectric Point (pI)

73.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_4	PF13837	29 - 118	3.8e-16	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29120
malus_domestica	MD15G1125000.v1.1
prunus_persica	Prupe.1G480500_v2.0.a1 Prupe.1G480500_v2.0.a1
pyrus_communis	pycom15g11260
rosa_chinensis	RchiOBHm_Chr6g0298001
rosa_laevigata	RLG00000011544
rosa_multiflora	Rmu_sc0002800.1_g000023
rosa_roxburghii	Rroxscaffold_7G00170010 Rroxscaffold_7G00178840
rosa_rugosa	Rorug06G0277800 Rorug06G0277900
rosa_samantha	Rh6AG388200 Rh6BG396400 Rh6CG402400 Rh6DG388600
rosa_wichuraiana	Rw6G033880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	556
AccB7I	CCANNNNNTGG	2 cut(s)	171, 259
AccBSI	CCGCTC	2 cut(s)	285, 349
AclWI	GGATC	2 cut(s)	73, 468
AcoI	YGGCCR	2 cut(s)	3, 386
AdeI	CACNNNGTG	1 cut(s)	246
AfaI	GTAC	2 cut(s)	137, 392
AfiI	CCNNNNNNNGG	8 cut(s)	115, 171, 175, 259, 384, 400, 595, 858
AgsI	TTSAA	1 cut(s)	827
AjnI	CCWGG	4 cut(s)	83, 114, 123, 393
AluBI	AGCT	5 cut(s)	142, 157, 268, 312, 700
AluI	AGCT	5 cut(s)	142, 157, 268, 312, 700
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	2 cut(s)	52, 538
AlwI	GGATC	2 cut(s)	73, 468
ApaI	GGGCCC	1 cut(s)	365
ApeKI	GCWGC	2 cut(s)	204, 832
ArsI	GACNNNNNNTTYG	3 cut(s)	87, 119, 848
AspLEI	GCGC	2 cut(s)	300, 837
AspS9I	GGNCC	5 cut(s)	87, 327, 361, 362, 586
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	3 cut(s)	9, 181, 272
AvaII	GGWCC	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	365
BaeI	ACNNNNGTAYC	2 cut(s)	374, 407
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	3 cut(s)	144, 228, 365
BbsI	GAAGAC	1 cut(s)	507
Bbv12I	GWGCWC	1 cut(s)	144
BbvCI	CCTCAGC	1 cut(s)	308
BbvI	GCAGC	2 cut(s)	191, 844
BccI	CCATC	7 cut(s)	253, 380, 662, 682, 751, 790, 860
BceAI	ACGGC	6 cut(s)	170, 373, 401, 484, 661, 670
BciT130I	CCWGG	4 cut(s)	85, 116, 125, 395
BcnI	CCSGG	1 cut(s)	44
BcoDI	GTCTC	2 cut(s)	52, 538
BfmI	CTRYAG	1 cut(s)	508
BfoI	RGCGCY	1 cut(s)	301
BfuAI	ACCTGC	1 cut(s)	556
Bme1390I	CCNGG	5 cut(s)	44, 85, 116, 125, 395
Bme18I	GGWCC	1 cut(s)	87
BmgT120I	GGNCC	5 cut(s)	87, 327, 361, 362, 586
BmiI	GGNNCC	3 cut(s)	89, 363, 364
BmrFI	CCNGG	5 cut(s)	44, 85, 116, 125, 395
BmrI	ACTGGG	1 cut(s)	238
BmuI	ACTGGG	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	507
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BpmI	CTGGAG	1 cut(s)	594
Bpu10I	CCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	44
BsaBI	GATNNNNATC	1 cut(s)	761
BsaI	GGTCTC	2 cut(s)	52, 538
BsaJI	CCNNGG	6 cut(s)	33, 42, 83, 148, 301, 620
Bsc4I	CCNNNNNNNGG	8 cut(s)	115, 171, 175, 259, 384, 400, 595, 858
Bse1I	ACTGG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	761
BseBI	CCWGG	4 cut(s)	85, 116, 125, 395
BseDI	CCNNGG	6 cut(s)	33, 42, 83, 148, 301, 620
BseGI	GGATG	2 cut(s)	673, 762
BseJI	GATNNNNATC	1 cut(s)	761
BseLI	CCNNNNNNNGG	8 cut(s)	115, 171, 175, 259, 384, 400, 595, 858
BseMII	CTCAG	2 cut(s)	322, 530
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	6 cut(s)	191, 413, 416, 419, 506, 556
BseSI	GKGCMC	1 cut(s)	365
BseX3I	CGGCCG	1 cut(s)	386
BseXI	GCAGC	2 cut(s)	191, 844
Bsh1285I	CGRYCG	1 cut(s)	389
BsiEI	CGRYCG	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	1 cut(s)	44
BslFI	GGGAC	1 cut(s)	611
BslI	CCNNNNNNNGG	8 cut(s)	115, 171, 175, 259, 384, 400, 595, 858
BsmAI	GTCTC	2 cut(s)	52, 538
BsmFI	GGGAC	1 cut(s)	611
Bso31I	GGTCTC	2 cut(s)	52, 538
Bsp120I	GGGCCC	1 cut(s)	361
Bsp1286I	GDGCHC	3 cut(s)	144, 228, 365
Bsp143I	GATC	4 cut(s)	78, 337, 460, 762
BspCNI	CTCAG	2 cut(s)	321, 531
BspHI	TCATGA	1 cut(s)	765
BspLI	GGNNCC	3 cut(s)	89, 363, 364
BspMI	ACCTGC	1 cut(s)	556
BspPI	GGATC	2 cut(s)	73, 468
BspTNI	GGTCTC	2 cut(s)	52, 538
BsrBI	CCGCTC	2 cut(s)	285, 349
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	6 cut(s)	33, 42, 83, 148, 301, 620
BssMI	GATC	4 cut(s)	78, 337, 460, 762
Bst2UI	CCWGG	4 cut(s)	85, 116, 125, 395
Bst4CI	ACNGT	2 cut(s)	103, 193
Bst6I	CTCTTC	1 cut(s)	474
BstC8I	GCNNGC	4 cut(s)	166, 202, 275, 702
BstDEI	CTNAG	2 cut(s)	308, 539
BstENI	CCTNNNNNAGG	1 cut(s)	113
BstF5I	GGATG	2 cut(s)	673, 762
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	2 cut(s)	300, 837
BstKTI	GATC	4 cut(s)	81, 340, 463, 765
BstMAI	GTCTC	2 cut(s)	52, 538
BstMBI	GATC	4 cut(s)	78, 337, 460, 762
BstMCI	CGRYCG	1 cut(s)	389
BstMWI	GCNNNNNNNGC	2 cut(s)	274, 654
BstNI	CCWGG	4 cut(s)	85, 116, 125, 395
BstSCI	CCNGG	5 cut(s)	42, 83, 114, 123, 393
BstSFI	CTRYAG	1 cut(s)	508
BstSLI	GKGCMC	1 cut(s)	365
BstV1I	GCAGC	2 cut(s)	191, 844
BstV2I	GAAGAC	1 cut(s)	507
BstZI	CGGCCG	1 cut(s)	386
BtgZI	GCGATG	1 cut(s)	672
BtsCI	GGATG	2 cut(s)	673, 762
BtsIMutI	CAGTG	1 cut(s)	251
BveI	ACCTGC	1 cut(s)	556
Cac8I	GCNNGC	4 cut(s)	166, 202, 275, 702
CciI	TCATGA	1 cut(s)	765
CfoI	GCGC	2 cut(s)	300, 837
Cfr13I	GGNCC	5 cut(s)	87, 327, 361, 362, 586
CseI	GACGC	1 cut(s)	266
Csp6I	GTAC	2 cut(s)	136, 391
CviAII	CATG	3 cut(s)	343, 367, 766
CviQI	GTAC	2 cut(s)	136, 391
DdeI	CTNAG	2 cut(s)	308, 539
DpnI	GATC	4 cut(s)	80, 339, 462, 764
DpnII	GATC	4 cut(s)	78, 337, 460, 762
DraIII	CACNNNGTG	1 cut(s)	246
EaeI	YGGCCR	2 cut(s)	3, 386
EagI	CGGCCG	1 cut(s)	386
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
EciI	GGCGGA	3 cut(s)	134, 260, 367
Ecl136II	GAGCTC	1 cut(s)	142
EclXI	CGGCCG	1 cut(s)	386
Eco147I	AGGCCT	1 cut(s)	119
Eco24I	GRGCYC	3 cut(s)	144, 228, 365
Eco31I	GGTCTC	2 cut(s)	52, 538
Eco47I	GGWCC	1 cut(s)	87
Eco52I	CGGCCG	1 cut(s)	386
Eco53kI	GAGCTC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	142
EcoNI	CCTNNNNNAGG	1 cut(s)	113
EcoO109I	RGGNCCY	2 cut(s)	361, 362
EcoRII	CCWGG	4 cut(s)	83, 114, 123, 393
EcoT38I	GRGCYC	3 cut(s)	144, 228, 365
FaeI	CATG	3 cut(s)	346, 370, 769
FaiI	YATR	5 cut(s)	344, 368, 752, 767, 818
FaqI	GGGAC	1 cut(s)	611
FatI	CATG	3 cut(s)	342, 366, 765
FauI	CCCGC	1 cut(s)	209
FokI	GGATG	2 cut(s)	680, 769
FriOI	GRGCYC	3 cut(s)	144, 228, 365
GlaI	GCGC	2 cut(s)	299, 836
GsuI	CTGGAG	1 cut(s)	594
HaeII	RGCGCY	1 cut(s)	301
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	266
HhaI	GCGC	2 cut(s)	300, 837
Hin1II	CATG	3 cut(s)	346, 370, 769
Hin6I	GCGC	2 cut(s)	298, 835
HinP1I	GCGC	2 cut(s)	298, 835
HinfI	GANTC	4 cut(s)	523, 599, 820, 848
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	3 cut(s)	9, 181, 272
Hpy166II	GTNNAC	2 cut(s)	106, 559
Hpy188I	TCNGA	1 cut(s)	540
Hpy188III	TCNNGA	6 cut(s)	292, 464, 527, 573, 596, 766
Hpy8I	GTNNAC	2 cut(s)	106, 559
Hpy99I	CGWCG	5 cut(s)	197, 416, 644, 647, 709
HpyCH4III	ACNGT	2 cut(s)	103, 193
HpyCH4V	TGCA	2 cut(s)	520, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	274, 654
HpyF3I	CTNAG	2 cut(s)	308, 539
Hsp92II	CATG	3 cut(s)	346, 370, 769
HspAI	GCGC	2 cut(s)	298, 835
Kzo9I	GATC	4 cut(s)	78, 337, 460, 762
LmnI	GCTCC	6 cut(s)	147, 273, 290, 346, 575, 697
Lsp1109I	GCAGC	2 cut(s)	191, 844
MaeIII	GTNAC	3 cut(s)	187, 278, 464
MalI	GATC	4 cut(s)	80, 339, 462, 764
MbiI	CCGCTC	2 cut(s)	285, 349
MboI	GATC	4 cut(s)	78, 337, 460, 762
MfeI	CAATTG	1 cut(s)	552
MhlI	GDGCHC	3 cut(s)	144, 228, 365
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	552, 840
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	532, 593
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	204
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	5 cut(s)	44, 85, 116, 125, 395
MunI	CAATTG	1 cut(s)	552
MvaI	CCWGG	4 cut(s)	85, 116, 125, 395
MwoI	GCNNNNNNNGC	2 cut(s)	274, 654
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	4 cut(s)	78, 337, 460, 762
NlaIII	CATG	3 cut(s)	346, 370, 769
NlaIV	GGNNCC	3 cut(s)	89, 363, 364
NmeAIII	GCCGAG	5 cut(s)	14, 173, 282, 581, 645
NmuCI	GTSAC	3 cut(s)	187, 278, 464
PagI	TCATGA	1 cut(s)	765
PceI	AGGCCT	1 cut(s)	119
PcsI	WCGNNNNNNNCGW	5 cut(s)	99, 189, 219, 420, 608
PfeI	GAWTC	2 cut(s)	820, 848
PflMI	CCANNNNNTGG	2 cut(s)	171, 259
PleI	GAGTC	2 cut(s)	531, 593
PpsI	GAGTC	2 cut(s)	531, 593
Psp124BI	GAGCTC	1 cut(s)	144
Psp6I	CCWGG	4 cut(s)	83, 114, 123, 393
PspGI	CCWGG	4 cut(s)	83, 114, 123, 393
PspN4I	GGNNCC	3 cut(s)	89, 363, 364
PspOMI	GGGCCC	1 cut(s)	361
PspPI	GGNCC	5 cut(s)	87, 327, 361, 362, 586
RsaI	GTAC	2 cut(s)	137, 392
RsaNI	GTAC	2 cut(s)	136, 391
SacI	GAGCTC	1 cut(s)	144
Sau3AI	GATC	4 cut(s)	78, 337, 460, 762
Sau96I	GGNCC	5 cut(s)	87, 327, 361, 362, 586
SchI	GAGTC	2 cut(s)	532, 593
ScrFI	CCNGG	5 cut(s)	44, 85, 116, 125, 395
SduI	GDGCHC	3 cut(s)	144, 228, 365
SfcI	CTRYAG	1 cut(s)	508
SinI	GGWCC	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	552, 840
SseBI	AGGCCT	1 cut(s)	119
SstI	GAGCTC	1 cut(s)	144
StuI	AGGCCT	1 cut(s)	119
StyD4I	CCNGG	5 cut(s)	42, 83, 114, 123, 393
TaaI	ACNGT	2 cut(s)	103, 193
TaqI	TCGA	3 cut(s)	336, 354, 855
TasI	AATT	2 cut(s)	552, 840
TauI	GCSGC	8 cut(s)	200, 210, 252, 352, 608, 611, 632, 635
TfiI	GAWTC	2 cut(s)	820, 848
TscAI	CASTG	1 cut(s)	251
TseFI	GTSAC	3 cut(s)	187, 278, 464
TseI	GCWGC	2 cut(s)	204, 832
Tsp45I	GTSAC	3 cut(s)	187, 278, 464
TspGWI	ACGGA	4 cut(s)	277, 722, 791, 823
TspRI	CASTG	1 cut(s)	251
Van91I	CCANNNNNTGG	2 cut(s)	171, 259
VpaK11BI	GGWCC	1 cut(s)	87
XagI	CCTNNNNNAGG	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.