Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0014668

Physical Location & Seq

Genomic Coordinates Forward (+)

10414610 .. 10418196

Gene Structure 3587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011544

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2391 bp

ATGCCACGTCTGCTTCATGGGACACTTAATGCAACAATTTATGGGATTGATAAGCTACACAGTGGATGTGGACTCGGCTTATTGTGGAAGATTTCTGGTTCCAAAATCTATGCAACAGTTGATCTAGACAAGGCTCGGGTGGCACGAACCCGAATGATAAACAATCCCCACAACCCCATATGGAAGGAAGAGTTCCACATCTACAGTGCTCATTTCATCTCACACATCATCTTCACTGTCAAAGCTAATGATCCTATTGGTGCCACACTCATAGGAAGAGCTTATATACCTGTTGAAGATATCATAAAGGGCTATGTGGTGGACAGATGGGTTGAGATACTAGATGAAGAACACAATCCTATCCATGGAAACTCTAGAATTCATGTCAAGTTGCAATTCTCAAGTGTTACAGAAGATGCTCATTGGTCTCAGGGACTCAGAAGTCCTGACTATGAGGGTGTTCCTTGGACCTTTTTCAATCAAAGACAGGGTTGCAGGGTTACCCTCTACCAAGATTCGCATGTCGCGGATGATTTTAATCCTGGGATTCCTATGGCCAATGGGGGATTCTACGAGCCACGAAGATGTTGGGAGGACATATTTGATGCAATCACTAATGCAAAACACTTTATCTACATAACTGGCTGGTCTGTCTCCACTGAAATAAACTTGCTGAGGGATCCACAAAGGCGAAAAGCAGGAGATGAGCTCACATTAGGACAGCTTCTCAAGAAAAAGGCTGATGAGGGTGTTCTAGTTCTCTTGCTTGTTTGGGATGACAGAACTTCTATTCCTCAATTTAAAAAGGATGGTCTGATGACAACACATGATCAAGAAACTGAGGAGTACTTTCGAAACACAAAAGTTCATTGCTTCCTTTGCCCGCGGAACCCTGATCTTGGTAGAAGCATAATTCAAGGCTTTGAGACTGCTACAATGTTCACTCACCATCAAAAAACAGTTGTAGTTGACAGTGAGATAGTCGGTGGAGATCCCTCGCAAAAAAGGAGGATTCTGAGCTTTGTTGGAGGCATTGATCTTTGTGATGGAAGATATGACACTCAGAAACACCCCCTATTTTCAACTCTAGGCACAACTCACCATAAGGACTTCCATCAGCCAAACTTTCCAGGCTCTTCGATTAGAAAAGGCGGTCCAAGAGAGCCATGGCATGATATCCATTGCAAACTAGAAGGGCCTGTTGCTTGGGATGTCTTGTACAACTTTGAGCAGAGGTGGAAAAAGCAAGTTGGTGACAAGTACTTATTTTCACTAAGCAAGCTTGAGGAAATCACGGTTCACCCTTTACAGAACATGTTATCAAATGACAGTGAAGCATGGAATGTTCAGCTGTTTCGTTCCATCGACAATGGAGCTGCTTTGGGGTTTCCTGAGGATCCACTTGAAGCAACACAAAGGGGACTTGTGAGTGGGAAGAACAACATCCTAGACAGAAGCATCCAGGATGCATATATCCACGCCATTCGCCGAGCAAAGAATTTCATTTACATAGAGAATCAGTACTTCCTTGGAAGCTCATTTGGGTGGAGATCAAAAGATATCAAGGATGAGGATATTAATGCTCTGCATCTTATCCCAAAGGAGCTGTCACTGAAGATTGTTAGTAAAATTGAAGCAGGGGAGAGGTTTGCTGTCTACATTGTTCTCCCAATGTGGCCAGAAGGTATACCCGAGAGTGGTTCTGTTCAGGCTATATTAGATTGGCAAAAAAGGACATTGGAGATGATGTACACTGATATCTCTGATGCCCTTCAGAGAAAGGGTTTGAATGCAAACCCTAGAGACTATCTTACATTCTTCTGCCTTGGGAACCGGGAGACCGTGAAGGATGGAGAGTATGTACCTCCAGAGACTCCAGAGCCAGACACTGATTACATCAGAGCTCAGAAGGCCCGGCGCTTCATGATTTATGTGCACTCAAAAATGATGATAGTTGATGATGAATACATTATCATTGGATCTGCCAACATAAACCAAAGGTCAATGGATGGGGCAAGGGACTCCGAAATTGCTATGGGAGCATTTCAGACTAATTATTTGGCTAATTCCACTGACCCAGTTTGGGGAGAGATATATGCTTTCAGGGTGACACTATGGTATGAGCACCTTAAAGTGCTTGACAGCTCGTTCTTGCATCCAGAATCAATGGAATGCATCCGGACGGTGAATGACCTCGCGGAAACAAACTGGGGCCTTTTCTCAAGTGACACTTTTCATGGTGACCTTCCTGGTCACCTTCTTCGATATCCTGTTGAGGTAAGCAAGACTGGAGCTCTAACAACACTGCCGGGGTTGGAACATTTCCCCGACACCAAGGCTCGAGTTTTTGGCAACAAGTCTGAGTACCTTCTTCCACTTCTTACCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0006629 GO:0006643 GO:0006950 GO:0006970 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0022622 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046466 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

797

Amino Acids

90.93

Weight (kDa)

6.0

Isoelectric Point (pI)

37.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	31 - 112	9.2e-10	C2 domain
PLDc	PF00614	643 - 668	3.3e-08	Phospholipase D Active site motif
PLDc_2	PF13091	643 - 675	3.8e-06	PLD-like domain
PLD_C	PF12357	714 - 786	6.3e-27	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29120
malus_domestica	MD15G1125000.v1.1
prunus_persica	Prupe.1G480500_v2.0.a1 Prupe.1G480500_v2.0.a1
pyrus_communis	pycom15g11260
rosa_chinensis	RchiOBHm_Chr6g0298001
rosa_laevigata	RLG00000011544
rosa_multiflora	Rmu_sc0002800.1_g000023
rosa_roxburghii	Rroxscaffold_7G00170010 Rroxscaffold_7G00178840
rosa_rugosa	Rorug06G0277800 Rorug06G0277900
rosa_samantha	Rh6AG388200 Rh6BG396400 Rh6CG402400 Rh6DG388600
rosa_wichuraiana	Rw6G033880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	441
AccB1I	GGYRCC	1 cut(s)	260
AccI	GTMKAC	2 cut(s)	1656, 1687
AccII	CGCG	3 cut(s)	527, 886, 2198
AccIII	TCCGGA	1 cut(s)	2178
AciI	CCGC	5 cut(s)	527, 884, 886, 1152, 2198
AclWI	GGATC	7 cut(s)	245, 674, 687, 986, 1391, 1404, 1987
AcoI	YGGCCR	2 cut(s)	555, 1676
AcsI	RAATTY	2 cut(s)	378, 1498
AcuI	CTGAAG	2 cut(s)	1634, 1757
AfaI	GTAC	7 cut(s)	848, 1220, 1262, 1523, 1751, 1863, 2366
AfiI	CCNNNNNNNGG	5 cut(s)	365, 899, 1697, 2083, 2084
AflIII	ACRYGT	1 cut(s)	1314
AgsI	TTSAA	7 cut(s)	296, 478, 917, 1083, 1406, 1634, 1789
AjiI	CACGTC	1 cut(s)	8
AjnI	CCWGG	4 cut(s)	541, 1129, 1461, 2248
AjuI	GAANNNNNNNTTGG	2 cut(s)	551, 583
AloI	GAACNNNNNNTCC	2 cut(s)	775, 807
Alw21I	GWGCWC	6 cut(s)	211, 711, 1906, 1938, 2127, 2296
Alw26I	GTCTC	6 cut(s)	432, 658, 920, 1797, 1832, 1865
Alw44I	GTGCAC	1 cut(s)	1934
AlwI	GGATC	7 cut(s)	245, 674, 687, 986, 1391, 1404, 1987
AlwNI	CAGNNNCTG	1 cut(s)	1889
Ama87I	CYCGRG	3 cut(s)	135, 1691, 2340
Aor13HI	TCCGGA	1 cut(s)	2178
AoxI	GGCC	5 cut(s)	555, 1196, 1676, 1911, 2212
ApaLI	GTGCAC	1 cut(s)	1934
ApeKI	GCWGC	1 cut(s)	1376
ApoI	RAATTY	2 cut(s)	378, 1498
ArsI	GACNNNNNNTTYG	4 cut(s)	1592, 1624, 2041, 2073
AseI	ATTAAT	1 cut(s)	1578
AspLEI	GCGC	1 cut(s)	1920
AspS9I	GGNCC	5 cut(s)	468, 1154, 1196, 1912, 2212
AsuC2I	CCSGG	3 cut(s)	1835, 1915, 2310
AsuHPI	GGTGA	8 cut(s)	938, 1091, 1265, 1292, 2119, 2197, 2246, 2252
AsuII	TTCGAA	1 cut(s)	853
AvaI	CYCGRG	3 cut(s)	135, 1691, 2340
AvaII	GGWCC	2 cut(s)	468, 1154
AxyI	CCTNAGG	1 cut(s)	1392
BaeGI	GKGCMC	1 cut(s)	1938
BalI	TGGCCA	2 cut(s)	557, 1678
BamHI	GGATCC	2 cut(s)	679, 1396
BanI	GGYRCC	1 cut(s)	260
BanII	GRGCYC	3 cut(s)	711, 1906, 2296
Bbv12I	GWGCWC	6 cut(s)	211, 711, 1906, 1938, 2127, 2296
BbvCI	CCTCAGC	1 cut(s)	674
BbvI	GCAGC	1 cut(s)	1363
BccI	CCATC	8 cut(s)	321, 803, 957, 1040, 1122, 1370, 1844, 2003
BciT130I	CCWGG	4 cut(s)	543, 1131, 1463, 2250
BclI	TGATCA	1 cut(s)	829
BcnI	CCSGG	3 cut(s)	1835, 1915, 2310
BcoDI	GTCTC	6 cut(s)	432, 658, 920, 1797, 1832, 1865
BfaI	CTAG	9 cut(s)	125, 341, 375, 755, 1088, 1190, 1448, 1800, 2389
BfmI	CTRYAG	1 cut(s)	202
BfoI	RGCGCY	1 cut(s)	1921
BisI	GCNGC	1 cut(s)	1377
BlsI	GCNGC	1 cut(s)	1378
BmcAI	AGTACT	3 cut(s)	848, 1262, 1523
Bme1390I	CCNGG	7 cut(s)	543, 1131, 1463, 1835, 1915, 2250, 2310
Bme18I	GGWCC	2 cut(s)	468, 1154
BmeT110I	CYCGRG	3 cut(s)	135, 1691, 2340
BmgBI	CACGTC	1 cut(s)	8
BmgT120I	GGNCC	5 cut(s)	468, 1154, 1196, 1912, 2212
BmiI	GGNNCC	7 cut(s)	100, 262, 681, 890, 1398, 1832, 2213
BmrFI	CCNGG	7 cut(s)	543, 1131, 1463, 1835, 1915, 2250, 2310
BmrI	ACTGGG	2 cut(s)	2072, 2218
BmsI	GCATC	8 cut(s)	406, 595, 1456, 1467, 1597, 1756, 2164, 2184
BmuI	ACTGGG	2 cut(s)	2072, 2218
BplI	GAGNNNNNCTC	2 cut(s)	693, 725
BpmI	CTGGAG	3 cut(s)	1851, 1860, 2310
Bpu10I	CCTNAGC	1 cut(s)	674
Bpu14I	TTCGAA	1 cut(s)	853
BpuEI	CTTGAG	4 cut(s)	385, 713, 1304, 2206
BpuMI	CCSGG	3 cut(s)	1835, 1915, 2310
BsaBI	GATNNNNATC	1 cut(s)	537
BsaI	GGTCTC	2 cut(s)	432, 1832
BsaJI	CCNNGG	9 cut(s)	364, 464, 542, 884, 1166, 1528, 1825, 2309, 2334
BsaWI	WCCGGW	1 cut(s)	2178
BsaXI	ACNNNNNCTCC	4 cut(s)	1733, 1763, 1845, 1875
Bsc4I	CCNNNNNNNGG	5 cut(s)	365, 899, 1697, 2083, 2084
Bse1I	ACTGG	4 cut(s)	646, 2078, 2213, 2293
Bse21I	CCTNAGG	1 cut(s)	1392
Bse3DI	GCAATG	2 cut(s)	868, 1180
Bse8I	GATNNNNATC	1 cut(s)	537
BseAI	TCCGGA	1 cut(s)	2178
BseBI	CCWGG	4 cut(s)	543, 1131, 1463, 2250
BseDI	CCNNGG	9 cut(s)	364, 464, 542, 884, 1166, 1528, 1825, 2309, 2334
BseJI	GATNNNNATC	1 cut(s)	537
BseLI	CCNNNNNNNGG	5 cut(s)	365, 899, 1697, 2083, 2084
BseMI	GCAATG	2 cut(s)	868, 1180
BseMII	CTCAG	9 cut(s)	443, 451, 665, 831, 1007, 1076, 1383, 1919, 2352
BseNI	ACTGG	4 cut(s)	646, 2078, 2213, 2293
BseRI	GAGGAG	1 cut(s)	857
BseSI	GKGCMC	1 cut(s)	1938
BseXI	GCAGC	1 cut(s)	1363
Bsh1236I	CGCG	3 cut(s)	527, 886, 2198
BshFI	GGCC	5 cut(s)	557, 1198, 1678, 1913, 2214
BshNI	GGYRCC	1 cut(s)	260
BsiHKAI	GWGCWC	6 cut(s)	211, 711, 1906, 1938, 2127, 2296
BsiHKCI	CYCGRG	3 cut(s)	135, 1691, 2340
BsiSI	CCGG	4 cut(s)	1834, 1915, 2179, 2309
BslFI	GGGAC	4 cut(s)	34, 447, 1434, 2033
BslI	CCNNNNNNNGG	5 cut(s)	365, 899, 1697, 2083, 2084
BsmAI	GTCTC	6 cut(s)	432, 658, 920, 1797, 1832, 1865
BsmFI	GGGAC	4 cut(s)	34, 447, 1434, 2033
BsmI	GAATGC	2 cut(s)	1795, 2177
BsnI	GGCC	5 cut(s)	557, 1198, 1678, 1913, 2214
Bso31I	GGTCTC	2 cut(s)	432, 1832
BsoBI	CYCGRG	3 cut(s)	135, 1691, 2340
Bsp119I	TTCGAA	1 cut(s)	853
Bsp1286I	GDGCHC	6 cut(s)	211, 711, 1906, 1938, 2127, 2296
Bsp13I	TCCGGA	1 cut(s)	2178
Bsp1407I	TGTACA	2 cut(s)	1218, 1749
Bsp19I	CCATGG	2 cut(s)	364, 1166
BspACI	CCGC	5 cut(s)	527, 884, 886, 1152, 2198
BspANI	GGCC	5 cut(s)	557, 1198, 1678, 1913, 2214
BspCNI	CTCAG	9 cut(s)	442, 450, 666, 832, 1008, 1075, 1384, 1918, 2353
BspEI	TCCGGA	1 cut(s)	2178
BspFNI	CGCG	3 cut(s)	527, 886, 2198
BspHI	TCATGA	1 cut(s)	1923
BspLI	GGNNCC	7 cut(s)	100, 262, 681, 890, 1398, 1832, 2213
BspPI	GGATC	7 cut(s)	245, 674, 687, 986, 1391, 1404, 1987
BspQI	GCTCTTC	2 cut(s)	271, 1141
BspT104I	TTCGAA	1 cut(s)	853
BspT107I	GGYRCC	1 cut(s)	260
BspTNI	GGTCTC	2 cut(s)	432, 1832
BsrDI	GCAATG	2 cut(s)	868, 1180
BsrGI	TGTACA	2 cut(s)	1218, 1749
BsrI	ACTGG	4 cut(s)	646, 2078, 2213, 2293
BssECI	CCNNGG	9 cut(s)	364, 464, 542, 884, 1166, 1528, 1825, 2309, 2334
BssNAI	GTATAC	1 cut(s)	1688
BssT1I	CCWWGG	6 cut(s)	364, 464, 1166, 1528, 1825, 2334
Bst1107I	GTATAC	1 cut(s)	1688
Bst2UI	CCWGG	4 cut(s)	543, 1131, 1463, 2250
Bst6I	CTCTTC	3 cut(s)	183, 271, 1141
BstAUI	TGTACA	2 cut(s)	1218, 1749
BstBI	TTCGAA	1 cut(s)	853
BstC8I	GCNNGC	2 cut(s)	884, 1280
BstDSI	CCRYGG	3 cut(s)	364, 884, 1166
BstEII	GGTNACC	3 cut(s)	499, 2240, 2252
BstFNI	CGCG	3 cut(s)	527, 886, 2198
BstH2I	RGCGCY	1 cut(s)	1921
BstHHI	GCGC	1 cut(s)	1920
BstMAI	GTCTC	6 cut(s)	432, 658, 920, 1797, 1832, 1865
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 140, 879, 1910, 2039
BstNI	CCWGG	4 cut(s)	543, 1131, 1463, 2250
BstNSI	RCATGY	2 cut(s)	524, 1318
BstPI	GGTNACC	3 cut(s)	499, 2240, 2252
BstSCI	CCNGG	7 cut(s)	541, 1129, 1461, 1833, 1913, 2248, 2308
BstSFI	CTRYAG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	1938
BstUI	CGCG	3 cut(s)	527, 886, 2198
BstV1I	GCAGC	1 cut(s)	1363
BstX2I	RGATCY	4 cut(s)	679, 991, 1396, 1979
BstYI	RGATCY	4 cut(s)	679, 991, 1396, 1979
BstZ17I	GTATAC	1 cut(s)	1688
Bsu36I	CCTNAGG	1 cut(s)	1392
BsuRI	GGCC	5 cut(s)	557, 1198, 1678, 1913, 2214
BtgI	CCRYGG	3 cut(s)	364, 884, 1166
BtrI	CACGTC	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	2303
Cac8I	GCNNGC	2 cut(s)	884, 1280
CaiI	CAGNNNCTG	1 cut(s)	1889
CciI	TCATGA	1 cut(s)	1923
CfoI	GCGC	1 cut(s)	1920
Cfr13I	GGNCC	5 cut(s)	468, 1154, 1196, 1912, 2212
Cfr42I	CCGCGG	1 cut(s)	887
Csp6I	GTAC	7 cut(s)	847, 1219, 1261, 1522, 1750, 1862, 2365
CviQI	GTAC	7 cut(s)	847, 1219, 1261, 1522, 1750, 1862, 2365
DraI	TTTAAA	1 cut(s)	802
DrdI	GACNNNNNNGTC	1 cut(s)	441
DseDI	GACNNNNNNGTC	1 cut(s)	441
EaeI	YGGCCR	2 cut(s)	555, 1676
Eam1104I	CTCTTC	3 cut(s)	183, 271, 1141
EarI	CTCTTC	3 cut(s)	183, 271, 1141
Ecl136II	GAGCTC	3 cut(s)	709, 1904, 2294
Eco130I	CCWWGG	6 cut(s)	364, 464, 1166, 1528, 1825, 2334
Eco24I	GRGCYC	3 cut(s)	711, 1906, 2296
Eco31I	GGTCTC	2 cut(s)	432, 1832
Eco32I	GATATC	5 cut(s)	301, 1177, 1561, 1759, 2267
Eco47I	GGWCC	2 cut(s)	468, 1154
Eco53kI	GAGCTC	3 cut(s)	709, 1904, 2294
Eco57I	CTGAAG	2 cut(s)	1634, 1757
Eco81I	CCTNAGG	1 cut(s)	1392
Eco88I	CYCGRG	3 cut(s)	135, 1691, 2340
Eco91I	GGTNACC	3 cut(s)	499, 2240, 2252
EcoICRI	GAGCTC	3 cut(s)	709, 1904, 2294
EcoO109I	RGGNCCY	2 cut(s)	1196, 2212
EcoO65I	GGTNACC	3 cut(s)	499, 2240, 2252
EcoRI	GAATTC	1 cut(s)	378
EcoRII	CCWGG	4 cut(s)	541, 1129, 1461, 2248
EcoRV	GATATC	5 cut(s)	301, 1177, 1561, 1759, 2267
EcoT14I	CCWWGG	6 cut(s)	364, 464, 1166, 1528, 1825, 2334
EcoT22I	ATGCAT	2 cut(s)	1471, 2177
EcoT38I	GRGCYC	3 cut(s)	711, 1906, 2296
ErhI	CCWWGG	6 cut(s)	364, 464, 1166, 1528, 1825, 2334
FalI	AAGNNNNNCTT	2 cut(s)	2215, 2247
FaqI	GGGAC	4 cut(s)	34, 447, 1434, 2033
FauI	CCCGC	1 cut(s)	891
FauNDI	CATATG	1 cut(s)	179
FbaI	TGATCA	1 cut(s)	829
FblI	GTMKAC	2 cut(s)	1656, 1687
Fnu4HI	GCNGC	1 cut(s)	1377
FriOI	GRGCYC	3 cut(s)	711, 1906, 2296
Fsp4HI	GCNGC	1 cut(s)	1377
FspBI	CTAG	9 cut(s)	125, 341, 375, 755, 1088, 1190, 1448, 1800, 2389
GlaI	GCGC	1 cut(s)	1919
GluI	GCNGC	1 cut(s)	1377
GsuI	CTGGAG	3 cut(s)	1851, 1860, 2310
HaeII	RGCGCY	1 cut(s)	1921
HaeIII	GGCC	5 cut(s)	557, 1198, 1678, 1913, 2214
HapII	CCGG	4 cut(s)	1834, 1915, 2179, 2309
HhaI	GCGC	1 cut(s)	1920
Hin6I	GCGC	1 cut(s)	1918
HinP1I	GCGC	1 cut(s)	1918
HincII	GTYRAC	1 cut(s)	970
HindII	GTYRAC	1 cut(s)	970
HindIII	AAGCTT	1 cut(s)	1280
HpaII	CCGG	4 cut(s)	1834, 1915, 2179, 2309
HphI	GGTGA	8 cut(s)	938, 1091, 1265, 1292, 2119, 2197, 2246, 2252
Hpy166II	GTNNAC	9 cut(s)	71, 322, 942, 970, 1300, 1657, 1688, 1752, 1936
Hpy8I	GTNNAC	9 cut(s)	71, 322, 942, 970, 1300, 1657, 1688, 1752, 1936
HpyAV	CCTTC	9 cut(s)	178, 1187, 1676, 1781, 1840, 1903, 2255, 2267, 2378
HpyCH4IV	ACGT	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 140, 879, 1910, 2039
HpySE526I	ACGT	1 cut(s)	7
HspAI	GCGC	1 cut(s)	1918
Kpn2I	TCCGGA	1 cut(s)	2178
Ksp22I	TGATCA	1 cut(s)	829
KspI	CCGCGG	1 cut(s)	887
LguI	GCTCTTC	2 cut(s)	271, 1141
LmnI	GCTCC	4 cut(s)	1373, 1603, 2039, 2291
Lsp1109I	GCAGC	1 cut(s)	1363
LweI	GCATC	8 cut(s)	406, 595, 1456, 1467, 1597, 1756, 2164, 2184
MaeI	CTAG	9 cut(s)	125, 341, 375, 755, 1088, 1190, 1448, 1800, 2389
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	8 cut(s)	406, 499, 1253, 1608, 2107, 2225, 2240, 2252
MflI	RGATCY	4 cut(s)	679, 991, 1396, 1979
MhlI	GDGCHC	6 cut(s)	211, 711, 1906, 1938, 2127, 2296
MlsI	TGGCCA	2 cut(s)	557, 1678
MluNI	TGGCCA	2 cut(s)	557, 1678
MlyI	GAGTC	4 cut(s)	66, 429, 1867, 2015
MmeI	TCCRAC	2 cut(s)	1006, 2295
Mox20I	TGGCCA	2 cut(s)	557, 1678
Mph1103I	ATGCAT	2 cut(s)	1471, 2177
MroI	TCCGGA	1 cut(s)	2178
MscI	TGGCCA	2 cut(s)	557, 1678
MseI	TTAA	5 cut(s)	27, 537, 801, 1578, 2130
MslI	CAYNNNNRTG	2 cut(s)	583, 1543
Msp20I	TGGCCA	2 cut(s)	557, 1678
MspA1I	CMGCKG	2 cut(s)	886, 1351
MspI	CCGG	4 cut(s)	1834, 1915, 2179, 2309
MspR9I	CCNGG	7 cut(s)	543, 1131, 1463, 1835, 1915, 2250, 2310
Mva1269I	GAATGC	2 cut(s)	1795, 2177
MvaI	CCWGG	4 cut(s)	543, 1131, 1463, 2250
MvnI	CGCG	3 cut(s)	527, 886, 2198
MwoI	GCNNNNNNNGC	5 cut(s)	10, 140, 879, 1910, 2039
NciI	CCSGG	3 cut(s)	1835, 1915, 2310
NcoI	CCATGG	2 cut(s)	364, 1166
NdeI	CATATG	1 cut(s)	179
NlaIV	GGNNCC	7 cut(s)	100, 262, 681, 890, 1398, 1832, 2213
NmeAIII	GCCGAG	2 cut(s)	54, 1514
NmuCI	GTSAC	6 cut(s)	1253, 1608, 2107, 2225, 2240, 2252
NsiI	ATGCAT	2 cut(s)	1471, 2177
NspI	RCATGY	2 cut(s)	524, 1318
NspV	TTCGAA	1 cut(s)	853
PaeR7I	CTCGAG	1 cut(s)	2340
PagI	TCATGA	1 cut(s)	1923
PciI	ACATGT	1 cut(s)	1314
PciSI	GCTCTTC	2 cut(s)	271, 1141
PcsI	WCGNNNNNNNCGW	1 cut(s)	142
PctI	GAATGC	2 cut(s)	1795, 2177
PfeI	GAWTC	6 cut(s)	515, 547, 567, 1012, 1516, 2162
PfoI	TCCNGGA	1 cut(s)	1461
PkrI	GCNGC	1 cut(s)	1378
PleI	GAGTC	4 cut(s)	66, 429, 1867, 2015
PpsI	GAGTC	4 cut(s)	66, 429, 1867, 2015
PscI	ACATGT	1 cut(s)	1314
PshBI	ATTAAT	1 cut(s)	1578
Psp124BI	GAGCTC	3 cut(s)	711, 1906, 2296
Psp6I	CCWGG	4 cut(s)	541, 1129, 1461, 2248
PspEI	GGTNACC	3 cut(s)	499, 2240, 2252
PspGI	CCWGG	4 cut(s)	541, 1129, 1461, 2248
PspN4I	GGNNCC	7 cut(s)	100, 262, 681, 890, 1398, 1832, 2213
PspPI	GGNCC	5 cut(s)	468, 1154, 1196, 1912, 2212
PspXI	VCTCGAGB	1 cut(s)	2340
PstNI	CAGNNNCTG	1 cut(s)	1889
PsuI	RGATCY	4 cut(s)	679, 991, 1396, 1979
PvuII	CAGCTG	1 cut(s)	1351
RsaI	GTAC	7 cut(s)	848, 1220, 1262, 1523, 1751, 1863, 2366
RsaNI	GTAC	7 cut(s)	847, 1219, 1261, 1522, 1750, 1862, 2365
RseI	CAYNNNNRTG	2 cut(s)	583, 1543
SacI	GAGCTC	3 cut(s)	711, 1906, 2296
SacII	CCGCGG	1 cut(s)	887
SapI	GCTCTTC	2 cut(s)	271, 1141
SaqAI	TTAA	5 cut(s)	27, 537, 801, 1578, 2130
SatI	GCNGC	1 cut(s)	1377
Sau96I	GGNCC	5 cut(s)	468, 1154, 1196, 1912, 2212
ScaI	AGTACT	3 cut(s)	848, 1262, 1523
SchI	GAGTC	4 cut(s)	66, 429, 1867, 2015
ScrFI	CCNGG	7 cut(s)	543, 1131, 1463, 1835, 1915, 2250, 2310
SduI	GDGCHC	6 cut(s)	211, 711, 1906, 1938, 2127, 2296
SfaNI	GCATC	8 cut(s)	406, 595, 1456, 1467, 1597, 1756, 2164, 2184
SfcI	CTRYAG	1 cut(s)	202
Sfr274I	CTCGAG	1 cut(s)	2340
Sfr303I	CCGCGG	1 cut(s)	887
SfuI	TTCGAA	1 cut(s)	853
SgrBI	CCGCGG	1 cut(s)	887
SinI	GGWCC	2 cut(s)	468, 1154
SlaI	CTCGAG	1 cut(s)	2340
SmiMI	CAYNNNNRTG	2 cut(s)	583, 1543
SmlI	CTYRAG	5 cut(s)	400, 728, 1283, 2221, 2340
SmoI	CTYRAG	5 cut(s)	400, 728, 1283, 2221, 2340
SsiI	CCGC	5 cut(s)	527, 884, 886, 1152, 2198
SspMI	CTAG	9 cut(s)	125, 341, 375, 755, 1088, 1190, 1448, 1800, 2389
SstI	GAGCTC	3 cut(s)	711, 1906, 2296
StyD4I	CCNGG	7 cut(s)	541, 1129, 1461, 1833, 1913, 2248, 2308
StyI	CCWWGG	6 cut(s)	364, 464, 1166, 1528, 1825, 2334
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	5 cut(s)	853, 1139, 1365, 2263, 2341
TatI	WGTACW	5 cut(s)	846, 1218, 1260, 1521, 1749
TfiI	GAWTC	6 cut(s)	515, 547, 567, 1012, 1516, 2162
Tru1I	TTAA	5 cut(s)	27, 537, 801, 1578, 2130
Tru9I	TTAA	5 cut(s)	27, 537, 801, 1578, 2130
TseFI	GTSAC	6 cut(s)	1253, 1608, 2107, 2225, 2240, 2252
TseI	GCWGC	1 cut(s)	1376
Tsp45I	GTSAC	6 cut(s)	1253, 1608, 2107, 2225, 2240, 2252
TspDTI	ATGAA	9 cut(s)	5, 205, 360, 371, 857, 1492, 1912, 1977, 2225
VneI	GTGCAC	1 cut(s)	1934
VpaK11BI	GGWCC	2 cut(s)	468, 1154
VspI	ATTAAT	1 cut(s)	1578
XapI	RAATTY	2 cut(s)	378, 1498
XbaI	TCTAGA	2 cut(s)	124, 374
XceI	RCATGY	2 cut(s)	524, 1318
XcmI	CCANNNNNNNNNTGG	2 cut(s)	585, 1164
XhoI	CTCGAG	1 cut(s)	2340
XmiI	GTMKAC	2 cut(s)	1656, 1687
XspI	CTAG	9 cut(s)	125, 341, 375, 755, 1088, 1190, 1448, 1800, 2389
ZrmI	AGTACT	3 cut(s)	848, 1262, 1523
Zsp2I	ATGCAT	2 cut(s)	1471, 2177

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.