Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0014668

Physical Location & Seq

Genomic Coordinates Reverse (-)

58459135 .. 58462844

Gene Structure 3710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G033880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2316 bp

ATGCCACGTCTGCTTCATGGGATACTTAATGCAACAATTTATGGGATTGATAAGCTACACAGTGGATGTGGACTCGGCTTATTGTGGAAGGTACGAGTATTCGGGCATTTTCCTTTTTTATCAAATCAAAGGCTGGTACTGTGCGGACCTCAGATTTCTGGTTCCAAAATCTATGCAACAGTTGATCTAGACAAGGCTCGGGTGGCACGAACCCGAATGATAAACAATCCCCACAACCCCATATGGAAGGAAGAGTTCCACATCTACAGTGCTCATTTCATCTCACACATTATCTTCACTGTCAAAGCTAATGATCCTATTGGTGCCACACTCATAGGAAGAGCTTATATACCTGTTGAAGATATCATAAAGGGCTATGTGGTGGACAGATGGGTTGAGATACTAGATGAAGAACACAATCCCATCCATGGAAACTCTAGAATTCATGTCAAGTTGCAATTCTCAAGTGTTGCAGAAGATGCTCATTGGTCTCGGGGACTCAGAAGTCCTGACTATGAGGGTGTTCCTTGGACCTTTTTCAATCAAAGACAGGGTTGCAGGGTTACCCTCTACCAAGATTCGCATCCACGAAGATGTTGGGAGGACATATTTGATGCAATCACTAATGCAAAACACTTGATCTACATAACTGGCTGGTCTGCGAAAGCAGGAGATGAGCTCACATTAGGACAGCTTCTCAAGAAAAAGGCTGATGAGGGTGTTCTAGTTCTCTTGCTTGTTTGGGATGACAGAACTTCAATTCCTCAATTTAAAAAGGATGGTCTGATGACAACACATGATCAAGAAACTGAGGAGTACTTTCGAAACACAAAAGTTCATTGCTTCCTTTGCCCGCGGAACCCTGATCTTGGTAGAAGCATTATTCAAGGTTTTGAGACTGCTACAATGTTCACTCACCATCAAAAAACAGTAGTAGTTGACAGTGAGATAGTCGGCATTGATCTTTGTGATGGAAGATATGACACTCAGAAACACCCCCTATTTTCAACTCTAGGCACAACTCACCATAAGGACTTCCATCAGCCAAACTTTCCAGGCTCTTCGATTAGAAAAGGCGGTCCAAGGGAGCCATGGCATGATATCCATTGCAAACTAGAAGGGCCTGTTGCTTGGGATGTCTTGTACAACTTTGAGCAGAGGTGGAAAAAGCAAGTTGGTGACAAGTACTTATTTTCACTAAGCAAGCTTGAGGAAATCACAGTTCACCCTTTACAGAACAAGTTATCAAATGATAGTGAAGCATGGAATGTTCAACTGTTTCGTTCCATCGACAATGGAGCTGCTTTGGGGTTTCCTGATAATCCACTTGAAGCAACACAAAGGGGACTTGTGAGTGGGAAGAACAACATCATAGACAGAAGCATCCAGGATGCATATATCCACGCCATTCGCCGAGCAAAGAATTTCATTTACATAGAGAATCAGTACTTCCTTGGAAGCTCATTTGGGTGGAGATCAAAAGATATCAAGGATGAGGATATTAATGCTCTGCATCTTATCCCAAAGGAGCTGTCACTGAAGATTGTTAGTAAAATTGAAGCAGGGGAGAGGTTTGCTGTCTACATTGTTCTCCCAATGTGGCCAGAAGGTATACCCGAGAGTGGTTCTGTTCAGGCTATATTAGATTGGCAAAAAAGGACATTGGAGATGATGTACACTGATATCTCTGAGGCCCTTCAGAGAAAGGGTTTGAATGCAAACCCTAGAGACTATCTTACATTCTTCTGCCTTGGGAACCGGGAGACCGTGAAGGAGGGAGAATATGTACCTCCAGAGACTCCAGAGCCAGACACTGATTACATCAGAGCTCAGAAGGCCCGGCGCTTCATGATTTATGTGCACTCAAAAATGATGATAGTTGATGATGAATACATTATCATTGGATCTGCCAACATAAACCAAAGGTCAATGGATGGGGCAAGGGACTCCGAAATTGCTATGGGAGCATTTCAGACTAATTATTTGGCTAATTCCACTGACCCAGCTAGGGGAGAGATATATGCTTTCAGGGTGACACTATGGTATGAGCACCTTAAAGTGCTTGACAGCTCTTTCTTGCATCCAGAATCAATGGAATGCATCCGGACGGTGAATGAACTTGCGGAAACAAACTGGGATATTTTCTCAAGTGACACTTTTCCTGGTGACCTTCCCGGTCACCTTCTTCGATATCCTGTTGAGGTAAGCAAGACTGGAGCTCTAACAACACTGCCGGGGTTCGAACATTTACCCGACACCAAGGCTCGAGTCTTTGGCACCAAGTCTGAGTACCTTCTTCCACTCCTTACCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0006629 GO:0006643 GO:0006950 GO:0006970 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0022622 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046466 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

771

Amino Acids

88.17

Weight (kDa)

6.24

Isoelectric Point (pI)

34.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
C2	PF00168	54 - 133	1.7e-09	C2 domain
PLDc	PF00614	618 - 643	3.2e-08	Phospholipase D Active site motif
PLDc_2	PF13091	618 - 649	3.8e-06	PLD-like domain
PLD_C	PF12357	689 - 761	6e-27	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29120
malus_domestica	MD15G1125000.v1.1
prunus_persica	Prupe.1G480500_v2.0.a1 Prupe.1G480500_v2.0.a1
pyrus_communis	pycom15g11260
rosa_chinensis	RchiOBHm_Chr6g0298001
rosa_laevigata	RLG00000011544
rosa_multiflora	Rmu_sc0002800.1_g000023
rosa_roxburghii	Rroxscaffold_7G00170010 Rroxscaffold_7G00178840
rosa_rugosa	Rorug06G0277800 Rorug06G0277900
rosa_samantha	Rh6AG388200 Rh6BG396400 Rh6CG402400 Rh6DG388600
rosa_wichuraiana	Rw6G033880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	504
AccB1I	GGYRCC	2 cut(s)	323, 2276
AccI	GTMKAC	2 cut(s)	1581, 1612
AccII	CGCG	1 cut(s)	856
AccIII	TCCGGA	1 cut(s)	2103
AciI	CCGC	5 cut(s)	144, 854, 856, 1077, 2123
AclWI	GGATC	2 cut(s)	308, 1912
AcoI	YGGCCR	1 cut(s)	1601
AcsI	RAATTY	2 cut(s)	441, 1423
AcuI	CTGAAG	2 cut(s)	1559, 1682
AfaI	GTAC	9 cut(s)	93, 138, 818, 1145, 1187, 1448, 1676, 1788, 2291
AfiI	CCNNNNNNNGG	5 cut(s)	428, 869, 1622, 2008, 2009
AgsI	TTSAA	9 cut(s)	359, 541, 759, 887, 1008, 1274, 1331, 1559, 1714
AjiI	CACGTC	1 cut(s)	8
AjnI	CCWGG	3 cut(s)	1054, 1386, 2161
AloI	GAACNNNNNNTCC	2 cut(s)	745, 777
Alw21I	GWGCWC	6 cut(s)	274, 681, 1831, 1863, 2052, 2221
Alw26I	GTCTC	5 cut(s)	495, 890, 1722, 1757, 1790
Alw44I	GTGCAC	1 cut(s)	1859
AlwI	GGATC	2 cut(s)	308, 1912
AlwNI	CAGNNNCTG	1 cut(s)	1814
Ama87I	CYCGRG	4 cut(s)	198, 492, 1616, 2265
Aor13HI	TCCGGA	1 cut(s)	2103
AoxI	GGCC	4 cut(s)	1121, 1601, 1692, 1836
ApaLI	GTGCAC	1 cut(s)	1859
ApeKI	GCWGC	1 cut(s)	1301
ApoI	RAATTY	2 cut(s)	441, 1423
ArsI	GACNNNNNNTTYG	4 cut(s)	1517, 1549, 1966, 1998
AseI	ATTAAT	1 cut(s)	1503
AspLEI	GCGC	1 cut(s)	1845
AspS9I	GGNCC	6 cut(s)	146, 531, 1079, 1121, 1693, 1837
AsuC2I	CCSGG	4 cut(s)	1760, 1840, 2175, 2235
AsuHPI	GGTGA	8 cut(s)	908, 1016, 1190, 1217, 2044, 2122, 2171, 2177
AsuII	TTCGAA	2 cut(s)	823, 2241
AvaI	CYCGRG	4 cut(s)	198, 492, 1616, 2265
AvaII	GGWCC	3 cut(s)	146, 531, 1079
BaeGI	GKGCMC	1 cut(s)	1863
BalI	TGGCCA	1 cut(s)	1603
BanI	GGYRCC	2 cut(s)	323, 2276
BanII	GRGCYC	3 cut(s)	681, 1831, 2221
Bbv12I	GWGCWC	6 cut(s)	274, 681, 1831, 1863, 2052, 2221
BbvI	GCAGC	1 cut(s)	1288
BccI	CCATC	8 cut(s)	384, 431, 773, 927, 965, 1047, 1295, 1928
BciT130I	CCWGG	3 cut(s)	1056, 1388, 2163
BciVI	GTATCC	1 cut(s)	15
BclI	TGATCA	1 cut(s)	799
BcnI	CCSGG	4 cut(s)	1760, 1840, 2175, 2235
BcoDI	GTCTC	5 cut(s)	495, 890, 1722, 1757, 1790
BfaI	CTAG	9 cut(s)	188, 404, 438, 725, 1013, 1115, 1725, 2007, 2314
BfmI	CTRYAG	1 cut(s)	265
BfoI	RGCGCY	1 cut(s)	1846
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	1302
BlsI	GCNGC	1 cut(s)	1303
BmcAI	AGTACT	3 cut(s)	818, 1187, 1448
Bme1390I	CCNGG	7 cut(s)	1056, 1388, 1760, 1840, 2163, 2175, 2235
Bme18I	GGWCC	3 cut(s)	146, 531, 1079
BmeT110I	CYCGRG	4 cut(s)	198, 492, 1616, 2265
BmgBI	CACGTC	1 cut(s)	8
BmgT120I	GGNCC	6 cut(s)	146, 531, 1079, 1121, 1693, 1837
BmiI	GGNNCC	6 cut(s)	163, 325, 860, 1089, 1757, 2278
BmrFI	CCNGG	7 cut(s)	1056, 1388, 1760, 1840, 2163, 2175, 2235
BmrI	ACTGGG	1 cut(s)	2143
BmsI	GCATC	8 cut(s)	469, 592, 604, 1381, 1392, 1522, 2089, 2109
BmuI	ACTGGG	1 cut(s)	2143
BplI	GAGNNNNNCTC	2 cut(s)	663, 695
BpmI	CTGGAG	3 cut(s)	1776, 1785, 2235
Bpu14I	TTCGAA	2 cut(s)	823, 2241
BpuEI	CTTGAG	4 cut(s)	448, 683, 1229, 2131
BpuMI	CCSGG	4 cut(s)	1760, 1840, 2175, 2235
BsaBI	GATNNNNATC	1 cut(s)	582
BsaI	GGTCTC	2 cut(s)	495, 1757
BsaJI	CCNNGG	9 cut(s)	427, 527, 854, 1082, 1091, 1453, 1750, 2234, 2259
BsaWI	WCCGGW	1 cut(s)	2103
BsaXI	ACNNNNNCTCC	4 cut(s)	1658, 1688, 1770, 1800
Bsc4I	CCNNNNNNNGG	5 cut(s)	428, 869, 1622, 2008, 2009
Bse1I	ACTGG	3 cut(s)	655, 2138, 2218
Bse3DI	GCAATG	2 cut(s)	838, 1105
Bse8I	GATNNNNATC	1 cut(s)	582
BseAI	TCCGGA	1 cut(s)	2103
BseBI	CCWGG	3 cut(s)	1056, 1388, 2163
BseDI	CCNNGG	9 cut(s)	427, 527, 854, 1082, 1091, 1453, 1750, 2234, 2259
BseJI	GATNNNNATC	1 cut(s)	582
BseLI	CCNNNNNNNGG	5 cut(s)	428, 869, 1622, 2008, 2009
BseMI	GCAATG	2 cut(s)	838, 1105
BseMII	CTCAG	7 cut(s)	164, 514, 801, 1001, 1680, 1844, 2277
BseNI	ACTGG	3 cut(s)	655, 2138, 2218
BseRI	GAGGAG	1 cut(s)	827
BseSI	GKGCMC	1 cut(s)	1863
BseXI	GCAGC	1 cut(s)	1288
BseYI	CCCAGC	1 cut(s)	2002
Bsh1236I	CGCG	1 cut(s)	856
BshFI	GGCC	4 cut(s)	1123, 1603, 1694, 1838
BshNI	GGYRCC	2 cut(s)	323, 2276
BsiHKAI	GWGCWC	6 cut(s)	274, 681, 1831, 1863, 2052, 2221
BsiHKCI	CYCGRG	4 cut(s)	198, 492, 1616, 2265
BsiSI	CCGG	5 cut(s)	1759, 1840, 2104, 2175, 2234
BslFI	GGGAC	3 cut(s)	510, 1359, 1958
BslI	CCNNNNNNNGG	5 cut(s)	428, 869, 1622, 2008, 2009
BsmAI	GTCTC	5 cut(s)	495, 890, 1722, 1757, 1790
BsmFI	GGGAC	3 cut(s)	510, 1359, 1958
BsmI	GAATGC	2 cut(s)	1720, 2102
BsnI	GGCC	4 cut(s)	1123, 1603, 1694, 1838
Bso31I	GGTCTC	2 cut(s)	495, 1757
BsoBI	CYCGRG	4 cut(s)	198, 492, 1616, 2265
Bsp119I	TTCGAA	2 cut(s)	823, 2241
Bsp1286I	GDGCHC	6 cut(s)	274, 681, 1831, 1863, 2052, 2221
Bsp13I	TCCGGA	1 cut(s)	2103
Bsp1407I	TGTACA	2 cut(s)	1143, 1674
Bsp143I	GATC	8 cut(s)	184, 313, 639, 799, 865, 961, 1475, 1904
Bsp19I	CCATGG	2 cut(s)	427, 1091
BspACI	CCGC	5 cut(s)	144, 854, 856, 1077, 2123
BspANI	GGCC	4 cut(s)	1123, 1603, 1694, 1838
BspCNI	CTCAG	7 cut(s)	163, 513, 802, 1000, 1681, 1843, 2278
BspEI	TCCGGA	1 cut(s)	2103
BspFNI	CGCG	1 cut(s)	856
BspHI	TCATGA	1 cut(s)	1848
BspLI	GGNNCC	6 cut(s)	163, 325, 860, 1089, 1757, 2278
BspPI	GGATC	2 cut(s)	308, 1912
BspQI	GCTCTTC	2 cut(s)	334, 1066
BspT104I	TTCGAA	2 cut(s)	823, 2241
BspT107I	GGYRCC	2 cut(s)	323, 2276
BspTNI	GGTCTC	2 cut(s)	495, 1757
BsrDI	GCAATG	2 cut(s)	838, 1105
BsrGI	TGTACA	2 cut(s)	1143, 1674
BsrI	ACTGG	3 cut(s)	655, 2138, 2218
BssECI	CCNNGG	9 cut(s)	427, 527, 854, 1082, 1091, 1453, 1750, 2234, 2259
BssMI	GATC	8 cut(s)	184, 313, 639, 799, 865, 961, 1475, 1904
BssNAI	GTATAC	1 cut(s)	1613
BssT1I	CCWWGG	7 cut(s)	427, 527, 1082, 1091, 1453, 1750, 2259
Bst1107I	GTATAC	1 cut(s)	1613
Bst2UI	CCWGG	3 cut(s)	1056, 1388, 2163
Bst6I	CTCTTC	3 cut(s)	246, 334, 1066
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstAUI	TGTACA	2 cut(s)	1143, 1674
BstBI	TTCGAA	2 cut(s)	823, 2241
BstC8I	GCNNGC	2 cut(s)	854, 1205
BstDEI	CTNAG	8 cut(s)	150, 500, 810, 987, 1199, 1689, 1830, 2286
BstDSI	CCRYGG	3 cut(s)	427, 854, 1091
BstEII	GGTNACC	3 cut(s)	562, 2165, 2177
BstFNI	CGCG	1 cut(s)	856
BstH2I	RGCGCY	1 cut(s)	1846
BstHHI	GCGC	1 cut(s)	1845
BstKTI	GATC	8 cut(s)	187, 316, 642, 802, 868, 964, 1478, 1907
BstMAI	GTCTC	5 cut(s)	495, 890, 1722, 1757, 1790
BstMBI	GATC	8 cut(s)	184, 313, 639, 799, 865, 961, 1475, 1904
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 203, 479, 849, 1835, 1964
BstNI	CCWGG	3 cut(s)	1056, 1388, 2163
BstPI	GGTNACC	3 cut(s)	562, 2165, 2177
BstSCI	CCNGG	7 cut(s)	1054, 1386, 1758, 1838, 2161, 2173, 2233
BstSFI	CTRYAG	1 cut(s)	265
BstSLI	GKGCMC	1 cut(s)	1863
BstUI	CGCG	1 cut(s)	856
BstV1I	GCAGC	1 cut(s)	1288
BstX2I	RGATCY	1 cut(s)	1904
BstYI	RGATCY	1 cut(s)	1904
BstZ17I	GTATAC	1 cut(s)	1613
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	4 cut(s)	1123, 1603, 1694, 1838
BtgI	CCRYGG	3 cut(s)	427, 854, 1091
BtrI	CACGTC	1 cut(s)	8
BtsI	GCAGTG	1 cut(s)	2228
BtsIMutI	CAGTG	9 cut(s)	67, 274, 297, 949, 1535, 1677, 1812, 1995, 2228
Cac8I	GCNNGC	2 cut(s)	854, 1205
CaiI	CAGNNNCTG	1 cut(s)	1814
CciI	TCATGA	1 cut(s)	1848
CfoI	GCGC	1 cut(s)	1845
Cfr13I	GGNCC	6 cut(s)	146, 531, 1079, 1121, 1693, 1837
Cfr42I	CCGCGG	1 cut(s)	857
Csp6I	GTAC	9 cut(s)	92, 137, 817, 1144, 1186, 1447, 1675, 1787, 2290
CviAII	CATG	8 cut(s)	17, 428, 446, 797, 1092, 1097, 1263, 1849
CviQI	GTAC	9 cut(s)	92, 137, 817, 1144, 1186, 1447, 1675, 1787, 2290
DdeI	CTNAG	8 cut(s)	150, 500, 810, 987, 1199, 1689, 1830, 2286
DpnI	GATC	8 cut(s)	186, 315, 641, 801, 867, 963, 1477, 1906
DpnII	GATC	8 cut(s)	184, 313, 639, 799, 865, 961, 1475, 1904
DraI	TTTAAA	1 cut(s)	772
DrdI	GACNNNNNNGTC	1 cut(s)	504
DseDI	GACNNNNNNGTC	1 cut(s)	504
EaeI	YGGCCR	1 cut(s)	1601
Eam1104I	CTCTTC	3 cut(s)	246, 334, 1066
EarI	CTCTTC	3 cut(s)	246, 334, 1066
Ecl136II	GAGCTC	3 cut(s)	679, 1829, 2219
Eco130I	CCWWGG	7 cut(s)	427, 527, 1082, 1091, 1453, 1750, 2259
Eco24I	GRGCYC	3 cut(s)	681, 1831, 2221
Eco31I	GGTCTC	2 cut(s)	495, 1757
Eco32I	GATATC	5 cut(s)	364, 1102, 1486, 1684, 2192
Eco47I	GGWCC	3 cut(s)	146, 531, 1079
Eco53kI	GAGCTC	3 cut(s)	679, 1829, 2219
Eco57I	CTGAAG	2 cut(s)	1559, 1682
Eco88I	CYCGRG	4 cut(s)	198, 492, 1616, 2265
Eco91I	GGTNACC	3 cut(s)	562, 2165, 2177
EcoICRI	GAGCTC	3 cut(s)	679, 1829, 2219
EcoO109I	RGGNCCY	2 cut(s)	1121, 1693
EcoO65I	GGTNACC	3 cut(s)	562, 2165, 2177
EcoRI	GAATTC	1 cut(s)	441
EcoRII	CCWGG	3 cut(s)	1054, 1386, 2161
EcoRV	GATATC	5 cut(s)	364, 1102, 1486, 1684, 2192
EcoT14I	CCWWGG	7 cut(s)	427, 527, 1082, 1091, 1453, 1750, 2259
EcoT22I	ATGCAT	2 cut(s)	1396, 2102
EcoT38I	GRGCYC	3 cut(s)	681, 1831, 2221
ErhI	CCWWGG	7 cut(s)	427, 527, 1082, 1091, 1453, 1750, 2259
FaeI	CATG	8 cut(s)	20, 431, 449, 800, 1095, 1100, 1266, 1852
FalI	AAGNNNNNCTT	2 cut(s)	2140, 2172
FaqI	GGGAC	3 cut(s)	510, 1359, 1958
FatI	CATG	8 cut(s)	16, 427, 445, 796, 1091, 1096, 1262, 1848
FauI	CCCGC	1 cut(s)	861
FauNDI	CATATG	1 cut(s)	242
FbaI	TGATCA	1 cut(s)	799
FblI	GTMKAC	2 cut(s)	1581, 1612
Fnu4HI	GCNGC	1 cut(s)	1302
FriOI	GRGCYC	3 cut(s)	681, 1831, 2221
Fsp4HI	GCNGC	1 cut(s)	1302
FspBI	CTAG	9 cut(s)	188, 404, 438, 725, 1013, 1115, 1725, 2007, 2314
GlaI	GCGC	1 cut(s)	1844
GluI	GCNGC	1 cut(s)	1302
GsaI	CCCAGC	1 cut(s)	2006
GsuI	CTGGAG	3 cut(s)	1776, 1785, 2235
HaeII	RGCGCY	1 cut(s)	1846
HaeIII	GGCC	4 cut(s)	1123, 1603, 1694, 1838
HapII	CCGG	5 cut(s)	1759, 1840, 2104, 2175, 2234
HhaI	GCGC	1 cut(s)	1845
Hin1II	CATG	8 cut(s)	20, 431, 449, 800, 1095, 1100, 1266, 1852
Hin6I	GCGC	1 cut(s)	1843
HinP1I	GCGC	1 cut(s)	1843
HincII	GTYRAC	1 cut(s)	940
HindII	GTYRAC	1 cut(s)	940
HindIII	AAGCTT	1 cut(s)	1205
HinfI	GANTC	8 cut(s)	72, 498, 578, 1441, 1798, 1946, 2087, 2268
HpaII	CCGG	5 cut(s)	1759, 1840, 2104, 2175, 2234
HphI	GGTGA	8 cut(s)	908, 1016, 1190, 1217, 2044, 2122, 2171, 2177
Hpy166II	GTNNAC	9 cut(s)	71, 385, 912, 940, 1225, 1582, 1613, 1677, 1861
Hpy8I	GTNNAC	9 cut(s)	71, 385, 912, 940, 1225, 1582, 1613, 1677, 1861
HpyCH4IV	ACGT	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 203, 479, 849, 1835, 1964
HpyF3I	CTNAG	8 cut(s)	150, 500, 810, 987, 1199, 1689, 1830, 2286
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	8 cut(s)	20, 431, 449, 800, 1095, 1100, 1266, 1852
HspAI	GCGC	1 cut(s)	1843
Kpn2I	TCCGGA	1 cut(s)	2103
Ksp22I	TGATCA	1 cut(s)	799
KspI	CCGCGG	1 cut(s)	857
Kzo9I	GATC	8 cut(s)	184, 313, 639, 799, 865, 961, 1475, 1904
LguI	GCTCTTC	2 cut(s)	334, 1066
LmnI	GCTCC	5 cut(s)	1087, 1298, 1528, 1964, 2216
Lsp1109I	GCAGC	1 cut(s)	1288
LweI	GCATC	8 cut(s)	469, 592, 604, 1381, 1392, 1522, 2089, 2109
MaeI	CTAG	9 cut(s)	188, 404, 438, 725, 1013, 1115, 1725, 2007, 2314
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	7 cut(s)	562, 1178, 1533, 2032, 2150, 2165, 2177
MalI	GATC	8 cut(s)	186, 315, 641, 801, 867, 963, 1477, 1906
MboI	GATC	8 cut(s)	184, 313, 639, 799, 865, 961, 1475, 1904
MflI	RGATCY	1 cut(s)	1904
MhlI	GDGCHC	6 cut(s)	274, 681, 1831, 1863, 2052, 2221
MlsI	TGGCCA	1 cut(s)	1603
MluNI	TGGCCA	1 cut(s)	1603
MlyI	GAGTC	5 cut(s)	66, 492, 1792, 1940, 2277
Mox20I	TGGCCA	1 cut(s)	1603
Mph1103I	ATGCAT	2 cut(s)	1396, 2102
MroI	TCCGGA	1 cut(s)	2103
MscI	TGGCCA	1 cut(s)	1603
MseI	TTAA	4 cut(s)	27, 771, 1503, 2055
MslI	CAYNNNNRTG	2 cut(s)	592, 1468
Msp20I	TGGCCA	1 cut(s)	1603
MspA1I	CMGCKG	1 cut(s)	856
MspI	CCGG	5 cut(s)	1759, 1840, 2104, 2175, 2234
MspR9I	CCNGG	7 cut(s)	1056, 1388, 1760, 1840, 2163, 2175, 2235
Mva1269I	GAATGC	2 cut(s)	1720, 2102
MvaI	CCWGG	3 cut(s)	1056, 1388, 2163
MvnI	CGCG	1 cut(s)	856
MwoI	GCNNNNNNNGC	6 cut(s)	10, 203, 479, 849, 1835, 1964
NciI	CCSGG	4 cut(s)	1760, 1840, 2175, 2235
NcoI	CCATGG	2 cut(s)	427, 1091
NdeI	CATATG	1 cut(s)	242
NdeII	GATC	8 cut(s)	184, 313, 639, 799, 865, 961, 1475, 1904
NlaIII	CATG	8 cut(s)	20, 431, 449, 800, 1095, 1100, 1266, 1852
NlaIV	GGNNCC	6 cut(s)	163, 325, 860, 1089, 1757, 2278
NmeAIII	GCCGAG	2 cut(s)	54, 1439
NmuCI	GTSAC	6 cut(s)	1178, 1533, 2032, 2150, 2165, 2177
NsiI	ATGCAT	2 cut(s)	1396, 2102
NspV	TTCGAA	2 cut(s)	823, 2241
PaeR7I	CTCGAG	1 cut(s)	2265
PagI	TCATGA	1 cut(s)	1848
PciSI	GCTCTTC	2 cut(s)	334, 1066
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PctI	GAATGC	2 cut(s)	1720, 2102
PfeI	GAWTC	3 cut(s)	578, 1441, 2087
PfoI	TCCNGGA	1 cut(s)	1386
PkrI	GCNGC	1 cut(s)	1303
PleI	GAGTC	5 cut(s)	66, 492, 1792, 1940, 2276
PpsI	GAGTC	5 cut(s)	66, 492, 1792, 1940, 2276
PshBI	ATTAAT	1 cut(s)	1503
Psp124BI	GAGCTC	3 cut(s)	681, 1831, 2221
Psp6I	CCWGG	3 cut(s)	1054, 1386, 2161
PspEI	GGTNACC	3 cut(s)	562, 2165, 2177
PspFI	CCCAGC	1 cut(s)	2002
PspGI	CCWGG	3 cut(s)	1054, 1386, 2161
PspN4I	GGNNCC	6 cut(s)	163, 325, 860, 1089, 1757, 2278
PspPI	GGNCC	6 cut(s)	146, 531, 1079, 1121, 1693, 1837
PspXI	VCTCGAGB	1 cut(s)	2265
PstNI	CAGNNNCTG	1 cut(s)	1814
PsuI	RGATCY	1 cut(s)	1904
RsaI	GTAC	9 cut(s)	93, 138, 818, 1145, 1187, 1448, 1676, 1788, 2291
RsaNI	GTAC	9 cut(s)	92, 137, 817, 1144, 1186, 1447, 1675, 1787, 2290
RseI	CAYNNNNRTG	2 cut(s)	592, 1468
SacI	GAGCTC	3 cut(s)	681, 1831, 2221
SacII	CCGCGG	1 cut(s)	857
SapI	GCTCTTC	2 cut(s)	334, 1066
SaqAI	TTAA	4 cut(s)	27, 771, 1503, 2055
SatI	GCNGC	1 cut(s)	1302
Sau3AI	GATC	8 cut(s)	184, 313, 639, 799, 865, 961, 1475, 1904
Sau96I	GGNCC	6 cut(s)	146, 531, 1079, 1121, 1693, 1837
ScaI	AGTACT	3 cut(s)	818, 1187, 1448
SchI	GAGTC	5 cut(s)	66, 492, 1792, 1940, 2277
ScrFI	CCNGG	7 cut(s)	1056, 1388, 1760, 1840, 2163, 2175, 2235
SduI	GDGCHC	6 cut(s)	274, 681, 1831, 1863, 2052, 2221
SfaNI	GCATC	8 cut(s)	469, 592, 604, 1381, 1392, 1522, 2089, 2109
SfcI	CTRYAG	1 cut(s)	265
Sfr274I	CTCGAG	1 cut(s)	2265
Sfr303I	CCGCGG	1 cut(s)	857
SfuI	TTCGAA	2 cut(s)	823, 2241
SgrBI	CCGCGG	1 cut(s)	857
SinI	GGWCC	3 cut(s)	146, 531, 1079
SlaI	CTCGAG	1 cut(s)	2265
SmiMI	CAYNNNNRTG	2 cut(s)	592, 1468
SmlI	CTYRAG	5 cut(s)	463, 698, 1208, 2146, 2265
SmoI	CTYRAG	5 cut(s)	463, 698, 1208, 2146, 2265
SsiI	CCGC	5 cut(s)	144, 854, 856, 1077, 2123
SspMI	CTAG	9 cut(s)	188, 404, 438, 725, 1013, 1115, 1725, 2007, 2314
SstI	GAGCTC	3 cut(s)	681, 1831, 2221
StyD4I	CCNGG	7 cut(s)	1054, 1386, 1758, 1838, 2161, 2173, 2233
StyI	CCWWGG	7 cut(s)	427, 527, 1082, 1091, 1453, 1750, 2259
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	6 cut(s)	823, 1064, 1290, 2188, 2241, 2266
TatI	WGTACW	5 cut(s)	816, 1143, 1185, 1446, 1674
TfiI	GAWTC	3 cut(s)	578, 1441, 2087
Tru1I	TTAA	4 cut(s)	27, 771, 1503, 2055
Tru9I	TTAA	4 cut(s)	27, 771, 1503, 2055
TscAI	CASTG	9 cut(s)	67, 274, 304, 949, 1542, 1684, 1819, 2002, 2235
TseFI	GTSAC	6 cut(s)	1178, 1533, 2032, 2150, 2165, 2177
TseI	GCWGC	1 cut(s)	1301
Tsp45I	GTSAC	6 cut(s)	1178, 1533, 2032, 2150, 2165, 2177
TspDTI	ATGAA	9 cut(s)	5, 268, 423, 434, 827, 1417, 1837, 1902, 2130
TspRI	CASTG	9 cut(s)	67, 274, 304, 949, 1542, 1684, 1819, 2002, 2235
VneI	GTGCAC	1 cut(s)	1859
VpaK11BI	GGWCC	3 cut(s)	146, 531, 1079
VspI	ATTAAT	1 cut(s)	1503
XapI	RAATTY	2 cut(s)	441, 1423
XbaI	TCTAGA	2 cut(s)	187, 437
XcmI	CCANNNNNNNNNTGG	2 cut(s)	594, 1089
XhoI	CTCGAG	1 cut(s)	2265
XmiI	GTMKAC	2 cut(s)	1581, 1612
XspI	CTAG	9 cut(s)	188, 404, 438, 725, 1013, 1115, 1725, 2007, 2314
ZrmI	AGTACT	3 cut(s)	818, 1187, 1448
Zsp2I	ATGCAT	2 cut(s)	1396, 2102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.