Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0014668

Physical Location & Seq

Genomic Coordinates Reverse (-)

58863101 .. 58867362

Gene Structure 4262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG402400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2238 bp

ATGATAAACAATCCCCACAACCCCATATGGAAGGAAGAGTTCCACATCTACAGTGCTCATTTCATCTCACACATAATCTTCACTGTCAAAGCTAATGATCCTATTGGTGCCACACTCATAGGAAGAGCTTATATACCTGTTGAAGATATCATAAAGGGCTATGTGGAGGATAGATGGGTTGAGATACTAGATGAAGAACACAATCCCATCCATGGAAACTCTAGAATTCATGTCAAGTTGCAATTCTCAAGTGTTGCAGAAGATGCTCATTGGTCTCAGGGACTCAGAAATCCTGACTATGAGGGTGTTCCTTGGACCTTTTTCAATCAAAGACAGGGTTGCAGGGTTACCCTCTACCAAGATTCGCATGTCGCGGATGATTTTAATCCTGGGATTCCTATGGCCAATGGGGGATTCTACGAGCCACGAGGATGTTGGGAGGACATATTTGATGCAATCACTAATGCAAAACACTTTATCTACATAACTGGCTGGTCTGTCTCCACTGAAATAAACTTGCTGAGGGATCCACAAAGGCAAAGAGCAGGAGATGAGCTCACATTAGGACAGCTTCTCAAGAAAAAGGCTGATGAGGGTGTTCTAGTTCTCTTGCTTGTTTGGGATGACAGAACTTCTATTCCTCAATTTAAAAAGGATGGTCTGATGACAACACATGATCAAGAAACTGAGGAGTACTTTCGAAACACAAAAGTTCATTGCTTCCTTTGCCCGCGGAACCCTGATCTTGGTAGAAGCATTATTCAAGGTTTTGAGACTGCTACAATGTTCACTCACCATCAAAAAACAGTAGTAGTTGACAGTGAGATAGTCGGTGGAGATCCCTCGCAAAAAAGGAGGATTCTGAGCTTTGTTGGAGGCATTGATCTTTGTGATGGAAGATATGACACTCAGAAACACCCCCTATTTTCAACTCTAGGCACAACTCACCATAAGGACTTCCATCAGCCAAACTTTCCAGGCTCTTCGATTAGAAAAGGCGGTCCAAGGGAGCCATGGCATGATATCCATTGCAAACTAGAAGGGCCTGTTGCTTGGGATGTCTTGTACAACTTTGAGCAGAGGTGGAAAAAGCAAGTTGGTGACAAGTACTTATTTTCACTAAGCAAGCTTGAGGAAATCACAGTTCACCCTTTACAGAACAAGTTATCAAATGATAGTGAAGCATGGAATGTTCAGCTGTTTCGTTCCATCGACAATGGAGCTGCTTTGGGGTTTCCTGAGAATCCACTTGAAGCAACACAAAGGGGACTTGTGAGTGGGAAGAACAACATCATAGACAGAAGCATCCAGGATGCATATATCCACGCCATTCGCCGAGCAAAGAATTTCATTTACATAGAGAATCAGTACTTCCTTGGAAGCTCATTTGGGTGGAGGTCAAAAGATATCAAGGATGAGGATATTAATGCTCTGCATCTTATCCCAAAGGAGCTGTCACTGAAGATTGTTAGTAAAATTGAAGCAGGGGAGAGGTTTGCTGTCTACATTGTTCTCCCAATGTGGCCAGAAGGTATACCCGAGAGTGGTTCTGTTCAGGCTATATTAGATTGGCAAAAAAGGACATTGGAGATGATGTACGCTGATATCTCTGAGGCCCTTCAGAGAAAGGGTTTGAATGCAAACCCTAGAGACTATCTTACATTCTTCTGCCTTGGGAACCGGGAGACCGTGAAGGATGGAGAATATGTACCTCCAGAGACTCCAGAGCCAGACACTGATTACATCAGAGCTCAGAAGGCCCGGCGCTTCATGATTTATGTGCACTCAAAAATGATGATAGTTGATGATGAATACATTATCATTGGATCTGCCAACATAAACCAAAGGTCAATGGATGGGGCAAGGGACTCCGAAATTGCTATGGGAGCATTTCAGACTAATTATTTGGCTAATTCCACTGACCCAGCTAGGGGAGAGATATATGCTTTCAGGGTGACACTATGGTATGAGCACCTTAAAGTGCTTGACAGCTCTTTCTTGCATCCAGAATCAATGGAATGCATCCGGACGGTGAATCACCTTGCGGAAACAAACTGGGATCTTTTCTCAAGTGACACTTTTCCTGGTGACCTTCCCGGTCACCTTCTTCGATATCCTGTTGAGGTAAGCAAGACTGGAGCTCTAACAACACTGCCGGGGTTCGAACATTTACCCGACACCAAGGCTCGAGTCTTTGGCACCAAGTCTGAGTACCTTCTTCCACTCCTTACCACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004620 GO:0004630 GO:0006629 GO:0006643 GO:0006950 GO:0006970 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008610 GO:0009056 GO:0009058 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010035 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0022622 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0042578 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0046466 GO:0048364 GO:0048731 GO:0048856 GO:0050896 GO:0071704 GO:0097305 GO:0099402 GO:1901575 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00564 ko00565 ko01100 ko01110 ko04014 ko04024 ko04071 ko04072 ko04144 ko04666 ko04724 ko04912 ko05231 map00564 map00565 map01100 map01110 map04014 map04024 map04071 map04072 map04144 map04666 map04724 map04912 map05231

Pfam Domains

Protein Families

C2 PLD_C PLDc

Protein Analysis

745

Amino Acids

85.25

Weight (kDa)

5.73

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLDc	PF00614	592 - 617	3.1e-08	Phospholipase D Active site motif
PLDc_2	PF13091	592 - 623	3.5e-06	PLD-like domain
PLD_C	PF12357	663 - 735	7.8e-27	Phospholipase D C terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014668)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g29120
malus_domestica	MD15G1125000.v1.1
prunus_persica	Prupe.1G480500_v2.0.a1 Prupe.1G480500_v2.0.a1
pyrus_communis	pycom15g11260
rosa_chinensis	RchiOBHm_Chr6g0298001
rosa_laevigata	RLG00000011544
rosa_multiflora	Rmu_sc0002800.1_g000023
rosa_roxburghii	Rroxscaffold_7G00170010 Rroxscaffold_7G00178840
rosa_rugosa	Rorug06G0277800 Rorug06G0277900
rosa_samantha	Rh6AG388200 Rh6BG396400 Rh6CG402400 Rh6DG388600
rosa_wichuraiana	Rw6G033880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	107, 2198
AccI	GTMKAC	2 cut(s)	1503, 1534
AccII	CGCG	2 cut(s)	374, 733
AccIII	TCCGGA	1 cut(s)	2025
AciI	CCGC	5 cut(s)	374, 731, 733, 999, 2045
AclWI	GGATC	6 cut(s)	92, 521, 534, 833, 1834, 2067
AcoI	YGGCCR	2 cut(s)	402, 1523
AcsI	RAATTY	2 cut(s)	225, 1345
AcuI	CTGAAG	2 cut(s)	1481, 1604
AfaI	GTAC	7 cut(s)	695, 1067, 1109, 1370, 1598, 1710, 2213
AfiI	CCNNNNNNNGG	5 cut(s)	212, 746, 1544, 1930, 1931
AgsI	TTSAA	7 cut(s)	143, 325, 764, 930, 1253, 1481, 1636
AjnI	CCWGG	4 cut(s)	388, 976, 1308, 2083
AjuI	GAANNNNNNNTTGG	2 cut(s)	398, 430
AloI	GAACNNNNNNTCC	2 cut(s)	622, 654
Alw21I	GWGCWC	6 cut(s)	58, 558, 1753, 1785, 1974, 2143
Alw26I	GTCTC	6 cut(s)	279, 505, 767, 1644, 1679, 1712
Alw44I	GTGCAC	1 cut(s)	1781
AlwI	GGATC	6 cut(s)	92, 521, 534, 833, 1834, 2067
AlwNI	CAGNNNCTG	1 cut(s)	1736
Ama87I	CYCGRG	2 cut(s)	1538, 2187
Aor13HI	TCCGGA	1 cut(s)	2025
AoxI	GGCC	5 cut(s)	402, 1043, 1523, 1614, 1758
ApaLI	GTGCAC	1 cut(s)	1781
ApeKI	GCWGC	1 cut(s)	1223
ApoI	RAATTY	2 cut(s)	225, 1345
ArsI	GACNNNNNNTTYG	4 cut(s)	1439, 1471, 1888, 1920
AseI	ATTAAT	1 cut(s)	1425
AspLEI	GCGC	1 cut(s)	1767
AspS9I	GGNCC	5 cut(s)	315, 1001, 1043, 1615, 1759
AsuC2I	CCSGG	4 cut(s)	1682, 1762, 2097, 2157
AsuHPI	GGTGA	9 cut(s)	785, 938, 1112, 1139, 1966, 2030, 2044, 2093, 2099
AsuII	TTCGAA	2 cut(s)	700, 2163
AvaI	CYCGRG	2 cut(s)	1538, 2187
AvaII	GGWCC	2 cut(s)	315, 1001
BaeGI	GKGCMC	1 cut(s)	1785
BalI	TGGCCA	2 cut(s)	404, 1525
BamHI	GGATCC	1 cut(s)	526
BanI	GGYRCC	2 cut(s)	107, 2198
BanII	GRGCYC	3 cut(s)	558, 1753, 2143
BauI	CACGAG	1 cut(s)	426
Bbv12I	GWGCWC	6 cut(s)	58, 558, 1753, 1785, 1974, 2143
BbvCI	CCTCAGC	1 cut(s)	521
BbvI	GCAGC	1 cut(s)	1210
BccI	CCATC	9 cut(s)	168, 215, 650, 804, 887, 969, 1217, 1691, 1850
BciT130I	CCWGG	4 cut(s)	390, 978, 1310, 2085
BclI	TGATCA	1 cut(s)	676
BcnI	CCSGG	4 cut(s)	1682, 1762, 2097, 2157
BcoDI	GTCTC	6 cut(s)	279, 505, 767, 1644, 1679, 1712
BfaI	CTAG	8 cut(s)	188, 222, 602, 935, 1037, 1647, 1929, 2236
BfmI	CTRYAG	1 cut(s)	49
BfoI	RGCGCY	1 cut(s)	1768
BisI	GCNGC	1 cut(s)	1224
BlsI	GCNGC	1 cut(s)	1225
BmcAI	AGTACT	3 cut(s)	695, 1109, 1370
Bme1390I	CCNGG	8 cut(s)	390, 978, 1310, 1682, 1762, 2085, 2097, 2157
Bme18I	GGWCC	2 cut(s)	315, 1001
BmeT110I	CYCGRG	2 cut(s)	1538, 2187
BmgT120I	GGNCC	5 cut(s)	315, 1001, 1043, 1615, 1759
BmiI	GGNNCC	6 cut(s)	109, 528, 737, 1011, 1679, 2200
BmrFI	CCNGG	8 cut(s)	390, 978, 1310, 1682, 1762, 2085, 2097, 2157
BmrI	ACTGGG	1 cut(s)	2065
BmsI	GCATC	7 cut(s)	253, 442, 1303, 1314, 1444, 2011, 2031
BmuI	ACTGGG	1 cut(s)	2065
BplI	GAGNNNNNCTC	2 cut(s)	540, 572
BpmI	CTGGAG	3 cut(s)	1698, 1707, 2157
Bpu10I	CCTNAGC	1 cut(s)	521
Bpu14I	TTCGAA	2 cut(s)	700, 2163
BpuEI	CTTGAG	4 cut(s)	232, 560, 1151, 2053
BpuMI	CCSGG	4 cut(s)	1682, 1762, 2097, 2157
BsaBI	GATNNNNATC	1 cut(s)	384
BsaI	GGTCTC	2 cut(s)	279, 1679
BsaWI	WCCGGW	1 cut(s)	2025
BsaXI	ACNNNNNCTCC	4 cut(s)	1580, 1610, 1692, 1722
Bsc4I	CCNNNNNNNGG	5 cut(s)	212, 746, 1544, 1930, 1931
Bse1I	ACTGG	3 cut(s)	493, 2060, 2140
Bse3DI	GCAATG	2 cut(s)	715, 1027
Bse8I	GATNNNNATC	1 cut(s)	384
BseAI	TCCGGA	1 cut(s)	2025
BseBI	CCWGG	4 cut(s)	390, 978, 1310, 2085
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	5 cut(s)	212, 746, 1544, 1930, 1931
BseMI	GCAATG	2 cut(s)	715, 1027
BseNI	ACTGG	3 cut(s)	493, 2060, 2140
BseRI	GAGGAG	1 cut(s)	704
BseSI	GKGCMC	1 cut(s)	1785
BseXI	GCAGC	1 cut(s)	1210
BseYI	CCCAGC	1 cut(s)	1924
Bsh1236I	CGCG	2 cut(s)	374, 733
BshFI	GGCC	5 cut(s)	404, 1045, 1525, 1616, 1760
BshNI	GGYRCC	2 cut(s)	107, 2198
BsiHKAI	GWGCWC	6 cut(s)	58, 558, 1753, 1785, 1974, 2143
BsiHKCI	CYCGRG	2 cut(s)	1538, 2187
BsiSI	CCGG	5 cut(s)	1681, 1762, 2026, 2097, 2156
BslFI	GGGAC	3 cut(s)	294, 1281, 1880
BslI	CCNNNNNNNGG	5 cut(s)	212, 746, 1544, 1930, 1931
BsmAI	GTCTC	6 cut(s)	279, 505, 767, 1644, 1679, 1712
BsmFI	GGGAC	3 cut(s)	294, 1281, 1880
BsmI	GAATGC	2 cut(s)	1642, 2024
BsnI	GGCC	5 cut(s)	404, 1045, 1525, 1616, 1760
Bso31I	GGTCTC	2 cut(s)	279, 1679
BsoBI	CYCGRG	2 cut(s)	1538, 2187
Bsp119I	TTCGAA	2 cut(s)	700, 2163
Bsp1286I	GDGCHC	6 cut(s)	58, 558, 1753, 1785, 1974, 2143
Bsp13I	TCCGGA	1 cut(s)	2025
Bsp1407I	TGTACA	1 cut(s)	1065
Bsp143I	GATC	8 cut(s)	97, 526, 676, 742, 838, 883, 1826, 2059
Bsp19I	CCATGG	2 cut(s)	211, 1013
BspACI	CCGC	5 cut(s)	374, 731, 733, 999, 2045
BspANI	GGCC	5 cut(s)	404, 1045, 1525, 1616, 1760
BspEI	TCCGGA	1 cut(s)	2025
BspFNI	CGCG	2 cut(s)	374, 733
BspHI	TCATGA	1 cut(s)	1770
BspLI	GGNNCC	6 cut(s)	109, 528, 737, 1011, 1679, 2200
BspPI	GGATC	6 cut(s)	92, 521, 534, 833, 1834, 2067
BspQI	GCTCTTC	2 cut(s)	118, 988
BspT104I	TTCGAA	2 cut(s)	700, 2163
BspT107I	GGYRCC	2 cut(s)	107, 2198
BspTNI	GGTCTC	2 cut(s)	279, 1679
BsrDI	GCAATG	2 cut(s)	715, 1027
BsrGI	TGTACA	1 cut(s)	1065
BsrI	ACTGG	3 cut(s)	493, 2060, 2140
BssMI	GATC	8 cut(s)	97, 526, 676, 742, 838, 883, 1826, 2059
BssNAI	GTATAC	1 cut(s)	1535
BssSI	CACGAG	1 cut(s)	426
BssT1I	CCWWGG	7 cut(s)	211, 311, 1004, 1013, 1375, 1672, 2181
Bst1107I	GTATAC	1 cut(s)	1535
Bst2BI	CACGAG	1 cut(s)	426
Bst2UI	CCWGG	4 cut(s)	390, 978, 1310, 2085
Bst4CI	ACNGT	7 cut(s)	53, 85, 808, 821, 1144, 1690, 2032
Bst6I	CTCTTC	3 cut(s)	30, 118, 988
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstAUI	TGTACA	1 cut(s)	1065
BstBI	TTCGAA	2 cut(s)	700, 2163
BstC8I	GCNNGC	2 cut(s)	731, 1127
BstDSI	CCRYGG	3 cut(s)	211, 731, 1013
BstEII	GGTNACC	3 cut(s)	346, 2087, 2099
BstFNI	CGCG	2 cut(s)	374, 733
BstH2I	RGCGCY	1 cut(s)	1768
BstHHI	GCGC	1 cut(s)	1767
BstKTI	GATC	8 cut(s)	100, 529, 679, 745, 841, 886, 1829, 2062
BstMAI	GTCTC	6 cut(s)	279, 505, 767, 1644, 1679, 1712
BstMBI	GATC	8 cut(s)	97, 526, 676, 742, 838, 883, 1826, 2059
BstMWI	GCNNNNNNNGC	4 cut(s)	263, 726, 1757, 1886
BstNI	CCWGG	4 cut(s)	390, 978, 1310, 2085
BstNSI	RCATGY	1 cut(s)	371
BstPI	GGTNACC	3 cut(s)	346, 2087, 2099
BstSCI	CCNGG	8 cut(s)	388, 976, 1308, 1680, 1760, 2083, 2095, 2155
BstSFI	CTRYAG	1 cut(s)	49
BstSLI	GKGCMC	1 cut(s)	1785
BstUI	CGCG	2 cut(s)	374, 733
BstV1I	GCAGC	1 cut(s)	1210
BstX2I	RGATCY	4 cut(s)	526, 838, 1826, 2059
BstYI	RGATCY	4 cut(s)	526, 838, 1826, 2059
BstZ17I	GTATAC	1 cut(s)	1535
BsuRI	GGCC	5 cut(s)	404, 1045, 1525, 1616, 1760
BtgI	CCRYGG	3 cut(s)	211, 731, 1013
BtsI	GCAGTG	1 cut(s)	2150
BtsIMutI	CAGTG	8 cut(s)	58, 81, 504, 826, 1457, 1734, 1917, 2150
Cac8I	GCNNGC	2 cut(s)	731, 1127
CaiI	CAGNNNCTG	1 cut(s)	1736
CciI	TCATGA	1 cut(s)	1770
CfoI	GCGC	1 cut(s)	1767
Cfr13I	GGNCC	5 cut(s)	315, 1001, 1043, 1615, 1759
Cfr42I	CCGCGG	1 cut(s)	734
Csp6I	GTAC	7 cut(s)	694, 1066, 1108, 1369, 1597, 1709, 2212
CviAII	CATG	8 cut(s)	212, 230, 368, 674, 1014, 1019, 1185, 1771
CviQI	GTAC	7 cut(s)	694, 1066, 1108, 1369, 1597, 1709, 2212
DpnI	GATC	8 cut(s)	99, 528, 678, 744, 840, 885, 1828, 2061
DpnII	GATC	8 cut(s)	97, 526, 676, 742, 838, 883, 1826, 2059
DraI	TTTAAA	1 cut(s)	649
EaeI	YGGCCR	2 cut(s)	402, 1523
Eam1104I	CTCTTC	3 cut(s)	30, 118, 988
EarI	CTCTTC	3 cut(s)	30, 118, 988
Ecl136II	GAGCTC	3 cut(s)	556, 1751, 2141
Eco130I	CCWWGG	7 cut(s)	211, 311, 1004, 1013, 1375, 1672, 2181
Eco24I	GRGCYC	3 cut(s)	558, 1753, 2143
Eco31I	GGTCTC	2 cut(s)	279, 1679
Eco32I	GATATC	5 cut(s)	148, 1024, 1408, 1606, 2114
Eco47I	GGWCC	2 cut(s)	315, 1001
Eco53kI	GAGCTC	3 cut(s)	556, 1751, 2141
Eco57I	CTGAAG	2 cut(s)	1481, 1604
Eco88I	CYCGRG	2 cut(s)	1538, 2187
Eco91I	GGTNACC	3 cut(s)	346, 2087, 2099
EcoICRI	GAGCTC	3 cut(s)	556, 1751, 2141
EcoO109I	RGGNCCY	2 cut(s)	1043, 1615
EcoO65I	GGTNACC	3 cut(s)	346, 2087, 2099
EcoRI	GAATTC	1 cut(s)	225
EcoRII	CCWGG	4 cut(s)	388, 976, 1308, 2083
EcoRV	GATATC	5 cut(s)	148, 1024, 1408, 1606, 2114
EcoT14I	CCWWGG	7 cut(s)	211, 311, 1004, 1013, 1375, 1672, 2181
EcoT22I	ATGCAT	2 cut(s)	1318, 2024
EcoT38I	GRGCYC	3 cut(s)	558, 1753, 2143
ErhI	CCWWGG	7 cut(s)	211, 311, 1004, 1013, 1375, 1672, 2181
FaeI	CATG	8 cut(s)	215, 233, 371, 677, 1017, 1022, 1188, 1774
FalI	AAGNNNNNCTT	2 cut(s)	2062, 2094
FaqI	GGGAC	3 cut(s)	294, 1281, 1880
FatI	CATG	8 cut(s)	211, 229, 367, 673, 1013, 1018, 1184, 1770
FauI	CCCGC	1 cut(s)	738
FauNDI	CATATG	1 cut(s)	26
FbaI	TGATCA	1 cut(s)	676
FblI	GTMKAC	2 cut(s)	1503, 1534
Fnu4HI	GCNGC	1 cut(s)	1224
FriOI	GRGCYC	3 cut(s)	558, 1753, 2143
Fsp4HI	GCNGC	1 cut(s)	1224
FspBI	CTAG	8 cut(s)	188, 222, 602, 935, 1037, 1647, 1929, 2236
GlaI	GCGC	1 cut(s)	1766
GluI	GCNGC	1 cut(s)	1224
GsaI	CCCAGC	1 cut(s)	1928
GsuI	CTGGAG	3 cut(s)	1698, 1707, 2157
HaeII	RGCGCY	1 cut(s)	1768
HaeIII	GGCC	5 cut(s)	404, 1045, 1525, 1616, 1760
HapII	CCGG	5 cut(s)	1681, 1762, 2026, 2097, 2156
HhaI	GCGC	1 cut(s)	1767
Hin1II	CATG	8 cut(s)	215, 233, 371, 677, 1017, 1022, 1188, 1774
Hin6I	GCGC	1 cut(s)	1765
HinP1I	GCGC	1 cut(s)	1765
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HindIII	AAGCTT	1 cut(s)	1127
HpaII	CCGG	5 cut(s)	1681, 1762, 2026, 2097, 2156
HphI	GGTGA	9 cut(s)	785, 938, 1112, 1139, 1966, 2030, 2044, 2093, 2099
Hpy166II	GTNNAC	6 cut(s)	789, 817, 1147, 1504, 1535, 1783
Hpy8I	GTNNAC	6 cut(s)	789, 817, 1147, 1504, 1535, 1783
HpyAV	CCTTC	9 cut(s)	25, 1034, 1523, 1628, 1687, 1750, 2102, 2114, 2225
HpyCH4III	ACNGT	7 cut(s)	53, 85, 808, 821, 1144, 1690, 2032
HpyF10VI	GCNNNNNNNGC	4 cut(s)	263, 726, 1757, 1886
Hsp92II	CATG	8 cut(s)	215, 233, 371, 677, 1017, 1022, 1188, 1774
HspAI	GCGC	1 cut(s)	1765
Kpn2I	TCCGGA	1 cut(s)	2025
Ksp22I	TGATCA	1 cut(s)	676
KspI	CCGCGG	1 cut(s)	734
Kzo9I	GATC	8 cut(s)	97, 526, 676, 742, 838, 883, 1826, 2059
LguI	GCTCTTC	2 cut(s)	118, 988
LmnI	GCTCC	5 cut(s)	1009, 1220, 1450, 1886, 2138
Lsp1109I	GCAGC	1 cut(s)	1210
LweI	GCATC	7 cut(s)	253, 442, 1303, 1314, 1444, 2011, 2031
MaeI	CTAG	8 cut(s)	188, 222, 602, 935, 1037, 1647, 1929, 2236
MaeIII	GTNAC	7 cut(s)	346, 1100, 1455, 1954, 2072, 2087, 2099
MalI	GATC	8 cut(s)	99, 528, 678, 744, 840, 885, 1828, 2061
MboI	GATC	8 cut(s)	97, 526, 676, 742, 838, 883, 1826, 2059
MflI	RGATCY	4 cut(s)	526, 838, 1826, 2059
MhlI	GDGCHC	6 cut(s)	58, 558, 1753, 1785, 1974, 2143
MlsI	TGGCCA	2 cut(s)	404, 1525
MluCI	AATT	8 cut(s)	225, 242, 644, 1345, 1476, 1875, 1900, 1912
MluNI	TGGCCA	2 cut(s)	404, 1525
MlyI	GAGTC	4 cut(s)	276, 1714, 1862, 2199
MmeI	TCCRAC	1 cut(s)	853
Mox20I	TGGCCA	2 cut(s)	404, 1525
Mph1103I	ATGCAT	2 cut(s)	1318, 2024
MroI	TCCGGA	1 cut(s)	2025
MscI	TGGCCA	2 cut(s)	404, 1525
MseI	TTAA	4 cut(s)	384, 648, 1425, 1977
MslI	CAYNNNNRTG	2 cut(s)	430, 1390
Msp20I	TGGCCA	2 cut(s)	404, 1525
MspA1I	CMGCKG	2 cut(s)	733, 1198
MspI	CCGG	5 cut(s)	1681, 1762, 2026, 2097, 2156
MspR9I	CCNGG	8 cut(s)	390, 978, 1310, 1682, 1762, 2085, 2097, 2157
Mva1269I	GAATGC	2 cut(s)	1642, 2024
MvaI	CCWGG	4 cut(s)	390, 978, 1310, 2085
MvnI	CGCG	2 cut(s)	374, 733
MwoI	GCNNNNNNNGC	4 cut(s)	263, 726, 1757, 1886
NciI	CCSGG	4 cut(s)	1682, 1762, 2097, 2157
NcoI	CCATGG	2 cut(s)	211, 1013
NdeI	CATATG	1 cut(s)	26
NdeII	GATC	8 cut(s)	97, 526, 676, 742, 838, 883, 1826, 2059
NlaIII	CATG	8 cut(s)	215, 233, 371, 677, 1017, 1022, 1188, 1774
NlaIV	GGNNCC	6 cut(s)	109, 528, 737, 1011, 1679, 2200
NmeAIII	GCCGAG	1 cut(s)	1361
NmuCI	GTSAC	6 cut(s)	1100, 1455, 1954, 2072, 2087, 2099
NsiI	ATGCAT	2 cut(s)	1318, 2024
NspI	RCATGY	1 cut(s)	371
NspV	TTCGAA	2 cut(s)	700, 2163
PaeR7I	CTCGAG	1 cut(s)	2187
PagI	TCATGA	1 cut(s)	1770
PciSI	GCTCTTC	2 cut(s)	118, 988
PctI	GAATGC	2 cut(s)	1642, 2024
PfeI	GAWTC	8 cut(s)	362, 394, 414, 859, 1243, 1363, 2009, 2035
PfoI	TCCNGGA	1 cut(s)	1308
PkrI	GCNGC	1 cut(s)	1225
PleI	GAGTC	4 cut(s)	276, 1714, 1862, 2198
PpsI	GAGTC	4 cut(s)	276, 1714, 1862, 2198
PshBI	ATTAAT	1 cut(s)	1425
Psp124BI	GAGCTC	3 cut(s)	558, 1753, 2143
Psp6I	CCWGG	4 cut(s)	388, 976, 1308, 2083
PspEI	GGTNACC	3 cut(s)	346, 2087, 2099
PspFI	CCCAGC	1 cut(s)	1924
PspGI	CCWGG	4 cut(s)	388, 976, 1308, 2083
PspN4I	GGNNCC	6 cut(s)	109, 528, 737, 1011, 1679, 2200
PspPI	GGNCC	5 cut(s)	315, 1001, 1043, 1615, 1759
PspXI	VCTCGAGB	1 cut(s)	2187
PstNI	CAGNNNCTG	1 cut(s)	1736
PsuI	RGATCY	4 cut(s)	526, 838, 1826, 2059
PvuII	CAGCTG	1 cut(s)	1198
RsaI	GTAC	7 cut(s)	695, 1067, 1109, 1370, 1598, 1710, 2213
RsaNI	GTAC	7 cut(s)	694, 1066, 1108, 1369, 1597, 1709, 2212
RseI	CAYNNNNRTG	2 cut(s)	430, 1390
SacI	GAGCTC	3 cut(s)	558, 1753, 2143
SacII	CCGCGG	1 cut(s)	734
SapI	GCTCTTC	2 cut(s)	118, 988
SaqAI	TTAA	4 cut(s)	384, 648, 1425, 1977
SatI	GCNGC	1 cut(s)	1224
Sau3AI	GATC	8 cut(s)	97, 526, 676, 742, 838, 883, 1826, 2059
Sau96I	GGNCC	5 cut(s)	315, 1001, 1043, 1615, 1759
ScaI	AGTACT	3 cut(s)	695, 1109, 1370
SchI	GAGTC	4 cut(s)	276, 1714, 1862, 2199
ScrFI	CCNGG	8 cut(s)	390, 978, 1310, 1682, 1762, 2085, 2097, 2157
SduI	GDGCHC	6 cut(s)	58, 558, 1753, 1785, 1974, 2143
SfaNI	GCATC	7 cut(s)	253, 442, 1303, 1314, 1444, 2011, 2031
SfcI	CTRYAG	1 cut(s)	49
Sfr274I	CTCGAG	1 cut(s)	2187
Sfr303I	CCGCGG	1 cut(s)	734
SfuI	TTCGAA	2 cut(s)	700, 2163
SgrBI	CCGCGG	1 cut(s)	734
SinI	GGWCC	2 cut(s)	315, 1001
SlaI	CTCGAG	1 cut(s)	2187
SmiMI	CAYNNNNRTG	2 cut(s)	430, 1390
SmlI	CTYRAG	5 cut(s)	247, 575, 1130, 2068, 2187
SmoI	CTYRAG	5 cut(s)	247, 575, 1130, 2068, 2187
Sse9I	AATT	8 cut(s)	225, 242, 644, 1345, 1476, 1875, 1900, 1912
SsiI	CCGC	5 cut(s)	374, 731, 733, 999, 2045
SspMI	CTAG	8 cut(s)	188, 222, 602, 935, 1037, 1647, 1929, 2236
SstI	GAGCTC	3 cut(s)	558, 1753, 2143
StyD4I	CCNGG	8 cut(s)	388, 976, 1308, 1680, 1760, 2083, 2095, 2155
StyI	CCWWGG	7 cut(s)	211, 311, 1004, 1013, 1375, 1672, 2181
TaaI	ACNGT	7 cut(s)	53, 85, 808, 821, 1144, 1690, 2032
TaqI	TCGA	6 cut(s)	700, 986, 1212, 2110, 2163, 2188
TasI	AATT	8 cut(s)	225, 242, 644, 1345, 1476, 1875, 1900, 1912
TatI	WGTACW	4 cut(s)	693, 1065, 1107, 1368
TfiI	GAWTC	8 cut(s)	362, 394, 414, 859, 1243, 1363, 2009, 2035
Tru1I	TTAA	4 cut(s)	384, 648, 1425, 1977
Tru9I	TTAA	4 cut(s)	384, 648, 1425, 1977
TscAI	CASTG	8 cut(s)	58, 88, 511, 826, 1464, 1741, 1924, 2157
TseFI	GTSAC	6 cut(s)	1100, 1455, 1954, 2072, 2087, 2099
TseI	GCWGC	1 cut(s)	1223
Tsp45I	GTSAC	6 cut(s)	1100, 1455, 1954, 2072, 2087, 2099
TspDTI	ATGAA	7 cut(s)	52, 207, 218, 704, 1339, 1759, 1824
TspRI	CASTG	8 cut(s)	58, 88, 511, 826, 1464, 1741, 1924, 2157
VneI	GTGCAC	1 cut(s)	1781
VpaK11BI	GGWCC	2 cut(s)	315, 1001
VspI	ATTAAT	1 cut(s)	1425
XapI	RAATTY	2 cut(s)	225, 1345
XbaI	TCTAGA	1 cut(s)	221
XceI	RCATGY	1 cut(s)	371
XcmI	CCANNNNNNNNNTGG	2 cut(s)	432, 1011
XhoI	CTCGAG	1 cut(s)	2187
XmiI	GTMKAC	2 cut(s)	1503, 1534
XspI	CTAG	8 cut(s)	188, 222, 602, 935, 1037, 1647, 1929, 2236
ZrmI	AGTACT	3 cut(s)	695, 1109, 1370
Zsp2I	ATGCAT	2 cut(s)	1318, 2024

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.