Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009656

Physical Location & Seq

Genomic Coordinates Reverse (-)

68497690 .. 68503444

Gene Structure 5755 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28030

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2445 bp

ATGGCGGTTCAGTTCAAATTCCGAAGCTCTGCGAAATTCGATTCCGTCGACCTTGAAGGTCGAGCCTCAATCCGCGTTCGTGATCTCAAAGCCAAAATCATCCGCCACAACAACCTCAACATCTGTCAAGATTCCGATCTCGTCTTCTCCGACTCCATAACCGGTCAAGAGTACACTAACGAGAATATTCAAATTCCGTGCGGCTCGTCCGTGATTATCAAGAGAGTTCCTGCAGGATCGGTACATGTGGATATGCCTCACTTCAACTGCAAGGAAGCTGGGAATCCGCCGAATGTTGAGACAGTCGACTTTGATGACTTTGGGGTTGACGTGTATCCCGTTCCTGAGGCAACCTTCGTCTGTTCTGGTTTGGATGCAGACAAGGATGCCTGCAGTCTGGGTTATGAACCAAATACTGGCATCACAAGATGTTTGGAGCCAGCAGTAGGAGGATGTCAGAAACTTGAAGCAAGTGGGATTAGTGATGCTATTCCAGGAAGTCATTCGCATGGTGGTGTTGAACAAATCTTACCACAGACAAAGTCAAGGCCTGAGGTTCAAGAAGACTTTAATTTGAAAAAGATGGGTTGTGATCCCGTAGATACAAAACATGCTGATATGCCATCAGAGATGAAATGCTCTCTATGCAACTCGTTTTTCAAGGAGGCTGTGATGATACCCTGCTGCCAGCACAGTTTTTGTGAGAAATGTATACGTCAAATGCTGCTTGAGAAGGCAAGATGTCCTAAGTGTTTTTCAACCAAGAGCAGAATTGAAGATCTGCTACCAAATATATCTCTTAGGCAAGCAATGGAGCATTTCCAAGAGTCTCAGAATTTAATCACTGTTCCAGATAATGCTTTTTGCCAATACGCTCCAGATGGAGAATCGGGAATTCAGGCAAAAGATGTCTCTTGTGGTGGTAGTATTTTTCAAAGGGAGTCAGAGTTGCCTCATTCTCCTGAAACAGGGATGGGATCTAATAATTGCTTAGCAGAATCTGCTTGTCACTCACCATTCAAAAATGATGCGCCGTATCATTTTGGTGCAAGAAACATGCAAAAATTTCCCAAGTTTTCACACAAGAACAATCAAATCGAGGGAGACGGATACGGTTCTACTCGTGTGGCTCCATATGGCTTGGCAGCTTTTGATGATTTCCAAGGGGAAAGCAAGCCTATACCTGAGGAAGCTGAACCTGTAATCAAGAAAAAGAGGCCACCTTGGGTTTATACTGCAGGTGGTGGAAAAAGTTTTATGGAGAGTGGGAGAAATAGAAAGGGGGATCGTGCCTGTTATATGTGTGGCTCCCCAGACCATTTAATAAGAGTGTGTCCAGTTGCTACCAGTCCACGCCCTATGCTTCATTCAGGAAATGCAGTCTTTCCAGGAGCTATGCCAGGTTATGTGCCACCATACTGGGATGGGGCTCTGTTGCCTCATACCCCACCCTTTAGAAATCTATACGGAAATCATGGGATGACAGCTCTTGACACCATGTTGATCCCTCACGCTCCTTTTTCTGTTCATCCATACATGCACACGCCATCCATGTATAGATCGATTCCAGGCTTTGGTGGATATATGGGAATGGGAGGTGTAGCACCTCTTCCTGAAACTGGTGAAGACTGTTATATAAGTCGTTCAGAATTTCTGGATCTTGAAGGTCAAGAAAAGAGGAGTAAACTGTCAAAGGAGAATTTTAGGAGAGATCAATCTTGTGATGACGATGAGGACTGGGGGAGGCATCAGTATAATGGGAGTGCAAGATTGCAAGAGCATAAATCTTTTGTAAACAGGGAAAAGAGTGTAAGCTACTCCAGTGACGGCTCTACTAAAAGATCTCAGAGACAAGATCGGCATCGTAATCAGATAGATGACAACAACATTCATTTGGTTGGTCTTCAGAAAAGTTCTCATTTGGTGGTTGGTCATCAGGATGGGAAACTGTATAATCGCACGGAGAAATCAAGTTCTGAATTAGATGATATGCCAAGTAGCTCCAGTTGGCACAGTGAAGAGAAACACAAGCATTATCATAGAAGCTCCAGAAAGCAAAATGAAAGAAGAGAGCAGTGTGACTGTGATAAACACAAACACTATCATAGAAGCTCCAGATATCAAAAGGAAAGAAGAGAGCAGTGTGGTAGTGATTCTAGTCGGAGTCATCATCAAAATATCATAGAGAAAGATGATAAGAGAAAGGGAATTCGGCATAATAACAAAAGGCACAAACATCACAGTAACTCGGGATCTGGTTTAGAACACAGTGTTTCCAGTGATAAGAAGCTACAGAAAGGGAGCAGTCACAATTTTAGAAAATCTGAGCACAATGCAAAGTCTAGTGTTGATGAGCGCAGTCATGACAGATGGAAAATGGTTAGTGGGTCAGATGAAGATAGTGGAGAAAATTATCGGTACTGTAAACAGAAAAGGGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001701 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006275 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009792 GO:0009888 GO:0009889 GO:0009987 GO:0010556 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0035264 GO:0036211 GO:0040007 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048513 GO:0048568 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051603 GO:0051716 GO:0060255 GO:0060429 GO:0061053 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DWNN zf-C3HC4_2 zf-CCHC

Protein Analysis

814

Amino Acids

91.53

Weight (kDa)

7.73

Isoelectric Point (pI)

60.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DWNN	PF08783	3 - 77	3e-19	DWNN domain
zf-C3HC4_2	PF13923	212 - 251	1.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	213 - 251	5e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009656)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31120 FvH4_2g31120 FvH4_2g31120 FvH4_2g31120 FvH4_2g31120 FvH4_2g31120
malus_domestica	MD08G1070600.v1.1 MD15G1051500.v1.1
prunus_persica	Prupe.1G405500_v2.0.a1 Prupe.1G405500_v2.0.a1 Prupe.1G405500_v2.0.a1
pyrus_communis	pycom08g05840 pycom15g04930
rosa_chinensis	RchiOBHm_Chr6g0311661
rosa_laevigata	RLG00000010383
rosa_roxburghii	Rroxscaffold_7G00157400
rosa_rugosa	Rorug06G0390500.1
rosa_samantha	Rh6AG505800 Rh6BG516600 Rh6CG522500 Rh6DG508200
rosa_wichuraiana	Rw6G044020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1229
Acc36I	ACCTGC	1 cut(s)	1229
AccB7I	CCANNNNNTGG	2 cut(s)	416, 1574
AccI	GTMKAC	3 cut(s)	48, 306, 712
AccII	CGCG	1 cut(s)	75
AciI	CCGC	5 cut(s)	5, 73, 103, 201, 287
AclWI	GGATC	7 cut(s)	244, 587, 985, 1293, 1498, 1665, 2260
AcsI	RAATTY	9 cut(s)	17, 35, 192, 835, 894, 1064, 1649, 1699, 2208
AcuI	CTGAAG	1 cut(s)	1889
AfaI	GTAC	3 cut(s)	173, 243, 2420
AfiI	CCNNNNNNNGG	5 cut(s)	416, 446, 968, 1574, 1619
AflIII	ACRYGT	2 cut(s)	244, 330
AgeI	ACCGGT	1 cut(s)	161
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	4 cut(s)	493, 1387, 1399, 1567
Alw21I	GWGCWC	1 cut(s)	2331
Alw26I	GTCTC	5 cut(s)	293, 834, 916, 1098, 1843
AlwI	GGATC	7 cut(s)	244, 587, 985, 1293, 1498, 1665, 2260
AlwNI	CAGNNNCTG	1 cut(s)	1001
Ama87I	CYCGRG	1 cut(s)	2248
AoxI	GGCC	2 cut(s)	548, 1217
ApeKI	GCWGC	3 cut(s)	684, 724, 1145
ApoI	RAATTY	9 cut(s)	17, 35, 192, 835, 894, 1064, 1649, 1699, 2208
AsiGI	ACCGGT	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	502
AspLEI	GCGC	2 cut(s)	1033, 2358
AsuHPI	GGTGA	2 cut(s)	1005, 1634
AvaI	CYCGRG	1 cut(s)	2248
AxyI	CCTNAGG	3 cut(s)	345, 552, 1185
BanII	GRGCYC	1 cut(s)	1432
BarI	GAAGNNNNNNTAC	4 cut(s)	768, 800, 1593, 1625
BauI	CACGAG	1 cut(s)	1122
BbsI	GAAGAC	4 cut(s)	136, 570, 1632, 1895
Bbv12I	GWGCWC	1 cut(s)	2331
BbvI	GCAGC	3 cut(s)	671, 711, 1157
BccI	CCATC	8 cut(s)	577, 631, 875, 967, 1418, 1555, 1934, 2364
BceAI	ACGGC	2 cut(s)	1018, 1843
BciT130I	CCWGG	4 cut(s)	495, 1389, 1401, 1569
BciVI	GTATCC	2 cut(s)	345, 1103
BcoDI	GTCTC	5 cut(s)	293, 834, 916, 1098, 1843
BfaI	CTAG	2 cut(s)	2157, 2343
BfmI	CTRYAG	4 cut(s)	231, 391, 1236, 2291
BfuAI	ACCTGC	1 cut(s)	1229
BfuI	GTATCC	2 cut(s)	345, 1103
BglII	AGATCT	2 cut(s)	778, 1841
BisI	GCNGC	4 cut(s)	202, 685, 725, 1146
BlpI	GCTNAGC	1 cut(s)	991
BlsI	GCNGC	4 cut(s)	203, 686, 726, 1147
Bme1390I	CCNGG	4 cut(s)	495, 1389, 1401, 1569
BmeT110I	CYCGRG	1 cut(s)	2248
BmgBI	CACGTC	1 cut(s)	331
BmiI	GGNNCC	3 cut(s)	438, 1131, 1309
BmrFI	CCNGG	4 cut(s)	495, 1389, 1401, 1569
BmrI	ACTGGG	2 cut(s)	1429, 1747
BmsI	GCATC	7 cut(s)	364, 376, 429, 475, 1018, 1756, 1870
BmuI	ACTGGG	2 cut(s)	1429, 1747
BpiI	GAAGAC	4 cut(s)	136, 570, 1632, 1895
BpmI	CTGGAG	5 cut(s)	861, 1804, 1987, 2032, 2098
Bpu1102I	GCTNAGC	1 cut(s)	991
BpuEI	CTTGAG	1 cut(s)	749
Bsa29I	ATCGAT	1 cut(s)	1562
BsaBI	GATNNNNATC	2 cut(s)	135, 1860
BsaJI	CCNNGG	2 cut(s)	1162, 1223
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	932, 962
Bsc4I	CCNNNNNNNGG	5 cut(s)	416, 446, 968, 1574, 1619
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	9 cut(s)	421, 1337, 1347, 1424, 1624, 1742, 1821, 2004, 2277
Bse21I	CCTNAGG	3 cut(s)	345, 552, 1185
Bse3DI	GCAATG	1 cut(s)	816
Bse8I	GATNNNNATC	2 cut(s)	135, 1860
BseBI	CCWGG	4 cut(s)	495, 1389, 1401, 1569
BseCI	ATCGAT	1 cut(s)	1562
BseDI	CCNNGG	2 cut(s)	1162, 1223
BseJI	GATNNNNATC	2 cut(s)	135, 1860
BseLI	CCNNNNNNNGG	5 cut(s)	416, 446, 968, 1574, 1619
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	6 cut(s)	336, 543, 845, 1176, 1859, 2316
BseNI	ACTGG	9 cut(s)	421, 1337, 1347, 1424, 1624, 1742, 1821, 2004, 2277
BseRI	GAGGAG	1 cut(s)	1693
BseXI	GCAGC	3 cut(s)	671, 711, 1157
BseYI	CCCAGC	1 cut(s)	278
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	2 cut(s)	550, 1219
BshTI	ACCGGT	1 cut(s)	161
BshVI	ATCGAT	1 cut(s)	1562
BsiHKAI	GWGCWC	1 cut(s)	2331
BsiHKCI	CYCGRG	1 cut(s)	2248
BsiSI	CCGG	1 cut(s)	162
BslI	CCNNNNNNNGG	5 cut(s)	416, 446, 968, 1574, 1619
BsmAI	GTCTC	5 cut(s)	293, 834, 916, 1098, 1843
BsmBI	CGTCTC	1 cut(s)	1098
BsnI	GGCC	2 cut(s)	550, 1219
BsoBI	CYCGRG	1 cut(s)	2248
Bsp1286I	GDGCHC	2 cut(s)	1432, 2331
Bsp1720I	GCTNAGC	1 cut(s)	991
BspACI	CCGC	5 cut(s)	5, 73, 103, 201, 287
BspANI	GGCC	2 cut(s)	550, 1219
BspCNI	CTCAG	6 cut(s)	337, 544, 844, 1177, 1858, 2317
BspDI	ATCGAT	1 cut(s)	1562
BspFNI	CGCG	1 cut(s)	75
BspHI	TCATGA	1 cut(s)	2362
BspLI	GGNNCC	3 cut(s)	438, 1131, 1309
BspMAI	CTGCAG	3 cut(s)	235, 395, 1240
BspMI	ACCTGC	1 cut(s)	1229
BspPI	GGATC	7 cut(s)	244, 587, 985, 1293, 1498, 1665, 2260
BsrDI	GCAATG	1 cut(s)	816
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	9 cut(s)	421, 1337, 1347, 1424, 1624, 1742, 1821, 2004, 2277
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	1162, 1223
BssNAI	GTATAC	1 cut(s)	713
BssSI	CACGAG	1 cut(s)	1122
BssT1I	CCWWGG	2 cut(s)	1162, 1223
Bst1107I	GTATAC	1 cut(s)	713
Bst2BI	CACGAG	1 cut(s)	1122
Bst2UI	CCWGG	4 cut(s)	495, 1389, 1401, 1569
Bst6I	CTCTTC	4 cut(s)	1614, 2013, 2062, 2128
BstAPI	GCANNNNNTGC	1 cut(s)	1001
BstC8I	GCNNGC	5 cut(s)	391, 441, 689, 807, 1175
BstDEI	CTNAG	9 cut(s)	345, 552, 747, 800, 831, 991, 1185, 1845, 2325
BstENI	CCTNNNNNAGG	1 cut(s)	966
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	2 cut(s)	1033, 2358
BstMAI	GTCTC	5 cut(s)	293, 834, 916, 1098, 1843
BstMWI	GCNNNNNNNGC	2 cut(s)	645, 1001
BstNI	CCWGG	4 cut(s)	495, 1389, 1401, 1569
BstNSI	RCATGY	4 cut(s)	248, 614, 1060, 1540
BstSCI	CCNGG	4 cut(s)	493, 1387, 1399, 1567
BstSFI	CTRYAG	4 cut(s)	231, 391, 1236, 2291
BstUI	CGCG	1 cut(s)	75
BstV1I	GCAGC	3 cut(s)	671, 711, 1157
BstV2I	GAAGAC	4 cut(s)	136, 570, 1632, 1895
BstX2I	RGATCY	5 cut(s)	778, 977, 1657, 1841, 2252
BstXI	CCANNNNNNTGG	1 cut(s)	1419
BstYI	RGATCY	5 cut(s)	778, 977, 1657, 1841, 2252
BstZ17I	GTATAC	1 cut(s)	713
Bsu15I	ATCGAT	1 cut(s)	1562
Bsu36I	CCTNAGG	3 cut(s)	345, 552, 1185
BsuI	GTATCC	2 cut(s)	345, 1103
BsuRI	GGCC	2 cut(s)	550, 1219
BsuTUI	ATCGAT	1 cut(s)	1562
BtrI	CACGTC	1 cut(s)	331
BtsI	GCAGTG	2 cut(s)	2081, 2147
BtsIMutI	CAGTG	7 cut(s)	843, 1828, 2020, 2081, 2147, 2275, 2284
BveI	ACCTGC	1 cut(s)	1229
Cac8I	GCNNGC	5 cut(s)	391, 441, 689, 807, 1175
CaiI	CAGNNNCTG	1 cut(s)	1001
CciI	TCATGA	1 cut(s)	2362
CfoI	GCGC	2 cut(s)	1033, 2358
Cfr10I	RCCGGY	1 cut(s)	161
ClaI	ATCGAT	1 cut(s)	1562
Csp6I	GTAC	3 cut(s)	172, 242, 2419
CspAI	ACCGGT	1 cut(s)	161
CviAII	CATG	9 cut(s)	245, 509, 611, 1057, 1475, 1498, 1537, 1552, 2363
CviQI	GTAC	3 cut(s)	172, 242, 2419
DdeI	CTNAG	9 cut(s)	345, 552, 747, 800, 831, 991, 1185, 1845, 2325
Eam1104I	CTCTTC	4 cut(s)	1614, 2013, 2062, 2128
EarI	CTCTTC	4 cut(s)	1614, 2013, 2062, 2128
EciI	GGCGGA	2 cut(s)	92, 276
Eco130I	CCWWGG	2 cut(s)	1162, 1223
Eco147I	AGGCCT	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	1432
Eco32I	GATATC	1 cut(s)	2120
Eco57I	CTGAAG	1 cut(s)	1889
Eco81I	CCTNAGG	3 cut(s)	345, 552, 1185
Eco88I	CYCGRG	1 cut(s)	2248
EcoNI	CCTNNNNNAGG	1 cut(s)	966
EcoRI	GAATTC	2 cut(s)	894, 2208
EcoRII	CCWGG	4 cut(s)	493, 1387, 1399, 1567
EcoRV	GATATC	1 cut(s)	2120
EcoT14I	CCWWGG	2 cut(s)	1162, 1223
EcoT38I	GRGCYC	1 cut(s)	1432
ErhI	CCWWGG	2 cut(s)	1162, 1223
Esp3I	CGTCTC	1 cut(s)	1098
FaeI	CATG	9 cut(s)	248, 512, 614, 1060, 1478, 1501, 1540, 1555, 2366
FatI	CATG	9 cut(s)	244, 508, 610, 1056, 1474, 1497, 1536, 1551, 2362
FauNDI	CATATG	1 cut(s)	1135
FblI	GTMKAC	3 cut(s)	48, 306, 712
Fnu4HI	GCNGC	4 cut(s)	202, 685, 725, 1146
FriOI	GRGCYC	1 cut(s)	1432
Fsp4HI	GCNGC	4 cut(s)	202, 685, 725, 1146
FspBI	CTAG	2 cut(s)	2157, 2343
GlaI	GCGC	2 cut(s)	1032, 2357
GluI	GCNGC	4 cut(s)	202, 685, 725, 1146
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	5 cut(s)	861, 1804, 1987, 2032, 2098
HaeIII	GGCC	2 cut(s)	550, 1219
HapII	CCGG	1 cut(s)	162
HhaI	GCGC	2 cut(s)	1033, 2358
Hin1II	CATG	9 cut(s)	248, 512, 614, 1060, 1478, 1501, 1540, 1555, 2366
Hin6I	GCGC	2 cut(s)	1031, 2356
HinP1I	GCGC	2 cut(s)	1031, 2356
HincII	GTYRAC	3 cut(s)	49, 307, 328
HindII	GTYRAC	3 cut(s)	49, 307, 328
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	2 cut(s)	1005, 1634
Hpy166II	GTNNAC	9 cut(s)	49, 174, 307, 328, 713, 1352, 1685, 1795, 2426
Hpy8I	GTNNAC	9 cut(s)	49, 174, 307, 328, 713, 1352, 1685, 1795, 2426
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	4 cut(s)	50, 364, 727, 1658
HpyCH4IV	ACGT	2 cut(s)	330, 715
HpyF10VI	GCNNNNNNNGC	2 cut(s)	645, 1001
HpyF3I	CTNAG	9 cut(s)	345, 552, 747, 800, 831, 991, 1185, 1845, 2325
HpySE526I	ACGT	2 cut(s)	330, 715
Hsp92II	CATG	9 cut(s)	248, 512, 614, 1060, 1478, 1501, 1540, 1555, 2366
HspAI	GCGC	2 cut(s)	1031, 2356
Lsp1109I	GCAGC	3 cut(s)	671, 711, 1157
LweI	GCATC	7 cut(s)	364, 376, 429, 475, 1018, 1756, 1870
MaeI	CTAG	2 cut(s)	2157, 2343
MaeII	ACGT	2 cut(s)	330, 715
MaeIII	GTNAC	5 cut(s)	1007, 1823, 2078, 2243, 2306
MflI	RGATCY	5 cut(s)	778, 977, 1657, 1841, 2252
MhlI	GDGCHC	2 cut(s)	1432, 2331
MlyI	GAGTC	4 cut(s)	146, 836, 950, 2173
MmeI	TCCRAC	2 cut(s)	174, 2141
MroXI	GAANNNNTTC	1 cut(s)	502
MseI	TTAA	3 cut(s)	570, 839, 1322
MslI	CAYNNNNRTG	4 cut(s)	507, 513, 1044, 1938
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	4 cut(s)	495, 1389, 1401, 1569
MvaI	CCWGG	4 cut(s)	495, 1389, 1401, 1569
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	645, 1001
NdeI	CATATG	1 cut(s)	1135
NlaIII	CATG	9 cut(s)	248, 512, 614, 1060, 1478, 1501, 1540, 1555, 2366
NlaIV	GGNNCC	3 cut(s)	438, 1131, 1309
NmuCI	GTSAC	4 cut(s)	1007, 1823, 2078, 2306
NspI	RCATGY	4 cut(s)	248, 614, 1060, 1540
PagI	TCATGA	1 cut(s)	2362
PaqCI	CACCTGC	1 cut(s)	1229
PceI	AGGCCT	1 cut(s)	550
PciI	ACATGT	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 147, 336
PdmI	GAANNNNTTC	1 cut(s)	502
PfeI	GAWTC	7 cut(s)	41, 131, 283, 887, 998, 1564, 2153
PflFI	GACNNNGTC	1 cut(s)	541
PflMI	CCANNNNNTGG	2 cut(s)	416, 1574
PfoI	TCCNGGA	2 cut(s)	493, 1387
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	203, 686, 726, 1147
PleI	GAGTC	4 cut(s)	146, 835, 949, 2172
PpsI	GAGTC	4 cut(s)	146, 835, 949, 2172
PscI	ACATGT	1 cut(s)	244
Psp6I	CCWGG	4 cut(s)	493, 1387, 1399, 1567
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	4 cut(s)	493, 1387, 1399, 1567
PspN4I	GGNNCC	3 cut(s)	438, 1131, 1309
PsrI	GAACNNNNNNTAC	2 cut(s)	513, 545
PstI	CTGCAG	3 cut(s)	235, 395, 1240
PstNI	CAGNNNCTG	1 cut(s)	1001
PsuI	RGATCY	5 cut(s)	778, 977, 1657, 1841, 2252
PsyI	GACNNNGTC	1 cut(s)	541
RsaI	GTAC	3 cut(s)	173, 243, 2420
RsaNI	GTAC	3 cut(s)	172, 242, 2419
RseI	CAYNNNNRTG	4 cut(s)	507, 513, 1044, 1938
SalI	GTCGAC	2 cut(s)	47, 305
SaqAI	TTAA	3 cut(s)	570, 839, 1322
SatI	GCNGC	4 cut(s)	202, 685, 725, 1146
SbfI	CCTGCAGG	1 cut(s)	235
SchI	GAGTC	4 cut(s)	146, 836, 950, 2173
ScrFI	CCNGG	4 cut(s)	495, 1389, 1401, 1569
SdaI	CCTGCAGG	1 cut(s)	235
SduI	GDGCHC	2 cut(s)	1432, 2331
SfaNI	GCATC	7 cut(s)	364, 376, 429, 475, 1018, 1756, 1870
SfcI	CTRYAG	4 cut(s)	231, 391, 1236, 2291
SmiMI	CAYNNNNRTG	4 cut(s)	507, 513, 1044, 1938
SmlI	CTYRAG	1 cut(s)	728
SmoI	CTYRAG	1 cut(s)	728
Sse8387I	CCTGCAGG	1 cut(s)	235
SseBI	AGGCCT	1 cut(s)	550
SsiI	CCGC	5 cut(s)	5, 73, 103, 201, 287
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	2 cut(s)	2157, 2343
StuI	AGGCCT	1 cut(s)	550
StyD4I	CCNGG	4 cut(s)	493, 1387, 1399, 1567
StyI	CCWWGG	2 cut(s)	1162, 1223
TaiI	ACGT	2 cut(s)	333, 718
TaqI	TCGA	6 cut(s)	39, 48, 61, 306, 1098, 1562
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	7 cut(s)	41, 131, 283, 887, 998, 1564, 2153
Tru1I	TTAA	3 cut(s)	570, 839, 1322
Tru9I	TTAA	3 cut(s)	570, 839, 1322
TscAI	CASTG	7 cut(s)	850, 1828, 2020, 2081, 2147, 2275, 2284
TseFI	GTSAC	4 cut(s)	1007, 1823, 2078, 2306
TseI	GCWGC	3 cut(s)	684, 724, 1145
Tsp45I	GTSAC	4 cut(s)	1007, 1823, 2078, 2306
TspDTI	ATGAA	7 cut(s)	420, 647, 1355, 1517, 1880, 2076, 2409
TspGWI	ACGGA	6 cut(s)	34, 186, 199, 1122, 1482, 1976
TspRI	CASTG	7 cut(s)	850, 1828, 2020, 2081, 2147, 2275, 2284
Tth111I	GACNNNGTC	1 cut(s)	541
Van91I	CCANNNNNTGG	2 cut(s)	416, 1574
XagI	CCTNNNNNAGG	1 cut(s)	966
XapI	RAATTY	9 cut(s)	17, 35, 192, 835, 894, 1064, 1649, 1699, 2208
XceI	RCATGY	4 cut(s)	248, 614, 1060, 1540
XmiI	GTMKAC	3 cut(s)	48, 306, 712
XmnI	GAANNNNTTC	1 cut(s)	502
XspI	CTAG	2 cut(s)	2157, 2343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.