Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009656

Physical Location & Seq

Genomic Coordinates Forward (+)

1239269 .. 1244891

Gene Structure 5623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00157400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2445 bp

ATGGCGGTTCAGTTCAAATTCCGAAGCTCTGCGAAATTCGATTCCGTCGACCTCGAAGGTCGAGCCTCAATCCCCGTTCGTGATCTCAAAGCCAAAATCATCCGCCACAACAACCTCAACATCTGTCAAGATTCCGCTCTCGTCTTCTCCGACGCCATAACCGGTCAAGAGTACACTAACGAGAATATTCAAATTCCGTGCGGCTCGTCCGTGATTATCAAGAGAGTTCCTGCAGGATCGGCACATGTGGATGTGCCTCACGTCAACTGCAAGGAAGCTGGGAATCCGCCGAATGTTGAGACAGTCGACTTTGATGACTTTGGGGTTGACGTGTATCCCGTTCCCGAGGCAACCTTCGTCTGTTCTGGTTTGGATGCAGACAAGGATGCCTGCAGTCTGGGTTATGAACCAAATACTGGCATCACAAGATGTTTGGAGCCAGCAGTAGGAGGATGTCAGAAACTTGAAGCAAGTGGGATTAGTGATGCTATTCCAGGAAGTCATTCGCATGGTGGAGTTGAACAAATCTTACCACAGACAAAGTCAAGGCCTGAGGTTCAAGAAGACTTTAATTTGGAAAAGATGGGTTGTGATCCCGTAGATGCAAAACATGCTGATATGCCATCAGAGATGAAATGCTCTCTATGCAACTCGTTTTTCAAGGAGGCTGTGATGATACCCTGCTGCCAGCACAGTTTTTGTGAGAAATGTATACGTCAAATGCTGCTTGAGAAGGCAAGATGTCCCAAGTGTTTTTCAACCAAGAGCAGAATTGAAGATCTGCTACCAAATATATCTCTTAGGCAAGCAATGGAGCATTTCCAAGAGTCTCAAAATTTAATCACTGTTCCAGATAATGCTTTTTGCCAATACGCTCCAGATGGAGAATCGGGAATTCAGGCAAAAGATGTCTCTTGTGGTGGTAGTATTTTTCAAAGGGTGTCAGAGTTGCCTCATTCTCCTGAAACAGGGATGGGATCTAATAATTGCTTAGCAGAATCTGCTTGTCACTCACCATTCAAAAATGATGCGCCGTATCATTTTGGTGCAGGAAACATGCAAAAAATTCCCAAGTTTTCGCAAAAGAACAATCAAATCGATGGAGACGGATACGGTTCTACTCGTGTGGCTCCATATGGCTCGGCAGCTTTTGATGATTTCCAAGGGGAAAGCAAGCCTATACCTGAGGAAGCTGAACCTGTAATCAAGAAAAAGAGGCCACCTTGGGTTTATACTGCAGGTGGTGGAAAAAGTTTTTTGGAGAGTGGGAGAAATAGAAAGGGGGATCGTGCCTGTTATATGTGTGGCTCCCCAGACCATTTAATAAGAGTGTGTCCAGTTGCTACCAGTCCACGCCCTATGCTTCATGCAGGAAATGCAGTCTTTCCAGGAGCTATGCCAGGTTATGTGCCACCATACTGGGATGGGGCTCTGTTGCCTCATACCCCGCCCTTTAGAAATCTATATGGAAATCATGGGATGACAGCTTTTGACACCATGTTGATCCCTCACGCTCCTTTTTCTGTTCATCCATACATGCACACGCCGTCCATGTCTAGATCGATTCCAGGCTTTGGTGGATATATGGGAATGGGAGGTGTAGCACCTCTTCCTGAAACTGGTGAAGACTGTTATATAAGTCGTTCAGAATTTCTGGATGTTGAAGGTCAAGTAAAGAGGAGAAAACTGTCAAAGGAGAATTTTAGGAGAGATCAATCTTGTGAGGACGATGAAGACTGGGGGAGACATCAGTATAATGGGAGTGCAAGATTGCAAGAGCATAAATCTTTTGTAAACAGGGAAAAGAGTGTAAGCTACTCCAGTGACGGCTCTACTAAAAGGTCTCAGAGACAAGATCGGCATCGTAATCAGATAGATGATGACAACATTCATTTGGTTGGTCATCGGAAGAGTTCTCATTTGGTGGTTGGTCATCAGGATGGGAAACTGTATAATCGCACGGAGAAATCAAGTTCAGAATTAGATGATATGCCAAGTAGCTCCAGTTGGCACAGTGAAGAGAAACACAATCATTATCATAGAAGCTCCAGAAAGCAAAATGAAAGAAGAGAGCAGTGTGACAGTGATAAACACAAACACTATCATAGAAGCTCCAGATATCAAAAGGAAAGAAGAGAGCAGTGTGGTAGTGATTCTAGTCGGAGTCATCATCAAAATATCATTGAGAAAGATGATAAGAGAAAGGGAATTCGGCATAATAACAAAACGCACAAACATCACAGTAACTCGGGATCTGGTTTAGAACATAGTGTTTCCAGTGATAAGAAGCTACAGAAAGGGAGCAGTCACAATTTTAGAAAATCTGTGCACAATGCAAAGTCTAGTGTTGATGAGCGCAGTCATGACAGATGGAAAATGGTTAGTGGGTCAGATGAAGATAGTGGAGAAGATTATCGGTACTGTAAACAGAAAAGGGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001701 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006275 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009792 GO:0009888 GO:0009889 GO:0009987 GO:0010556 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0035264 GO:0036211 GO:0040007 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048513 GO:0048568 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051603 GO:0051716 GO:0060255 GO:0060429 GO:0061053 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DWNN zf-C3HC4_2 zf-CCHC

Protein Analysis

814

Amino Acids

90.96

Weight (kDa)

7.4

Isoelectric Point (pI)

59.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DWNN	PF08783	3 - 77	4.2e-18	DWNN domain
zf-C3HC4_2	PF13923	212 - 251	1.2e-08	Zinc finger, C3HC4 type (RING finger)
zf-C3HC4	PF00097	213 - 251	5e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009656)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31120 FvH4_2g31120 FvH4_2g31120 FvH4_2g31120 FvH4_2g31120 FvH4_2g31120
malus_domestica	MD08G1070600.v1.1 MD15G1051500.v1.1
prunus_persica	Prupe.1G405500_v2.0.a1 Prupe.1G405500_v2.0.a1 Prupe.1G405500_v2.0.a1
pyrus_communis	pycom08g05840 pycom15g04930
rosa_chinensis	RchiOBHm_Chr6g0311661
rosa_laevigata	RLG00000010383
rosa_roxburghii	Rroxscaffold_7G00157400
rosa_rugosa	Rorug06G0390500.1
rosa_samantha	Rh6AG505800 Rh6BG516600 Rh6CG522500 Rh6DG508200
rosa_wichuraiana	Rw6G044020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1229
Acc36I	ACCTGC	1 cut(s)	1229
AccB7I	CCANNNNNTGG	2 cut(s)	416, 1574
AccBSI	CCGCTC	1 cut(s)	137
AccI	GTMKAC	3 cut(s)	48, 306, 712
AciI	CCGC	6 cut(s)	5, 103, 135, 201, 287, 1448
AclWI	GGATC	6 cut(s)	244, 587, 985, 1293, 1498, 2260
AcsI	RAATTY	9 cut(s)	17, 35, 192, 835, 894, 1065, 1649, 1699, 2208
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	2 cut(s)	173, 2420
AfiI	CCNNNNNNNGG	5 cut(s)	416, 446, 968, 1574, 1619
AflIII	ACRYGT	2 cut(s)	244, 330
AgeI	ACCGGT	1 cut(s)	161
AjiI	CACGTC	2 cut(s)	262, 331
AjnI	CCWGG	4 cut(s)	493, 1387, 1399, 1567
Alw21I	GWGCWC	1 cut(s)	2331
Alw26I	GTCTC	7 cut(s)	293, 834, 916, 1098, 1738, 1843, 1848
Alw44I	GTGCAC	1 cut(s)	2327
AlwI	GGATC	6 cut(s)	244, 587, 985, 1293, 1498, 2260
AlwNI	CAGNNNCTG	1 cut(s)	1001
Ama87I	CYCGRG	2 cut(s)	344, 2248
AoxI	GGCC	2 cut(s)	548, 1217
ApaLI	GTGCAC	1 cut(s)	2327
ApeKI	GCWGC	3 cut(s)	684, 724, 1145
ApoI	RAATTY	9 cut(s)	17, 35, 192, 835, 894, 1065, 1649, 1699, 2208
AsiGI	ACCGGT	1 cut(s)	161
Asp700I	GAANNNNTTC	1 cut(s)	502
AspLEI	GCGC	2 cut(s)	1033, 2358
AsuHPI	GGTGA	2 cut(s)	1005, 1634
AvaI	CYCGRG	2 cut(s)	344, 2248
AxyI	CCTNAGG	2 cut(s)	552, 1185
BaeGI	GKGCMC	1 cut(s)	2331
BanII	GRGCYC	1 cut(s)	1432
BarI	GAAGNNNNNNTAC	4 cut(s)	768, 800, 1593, 1625
BauI	CACGAG	1 cut(s)	1122
BbsI	GAAGAC	4 cut(s)	136, 570, 1632, 1740
Bbv12I	GWGCWC	1 cut(s)	2331
BbvI	GCAGC	3 cut(s)	671, 711, 1157
BccI	CCATC	8 cut(s)	577, 631, 875, 967, 1094, 1418, 1934, 2364
BceAI	ACGGC	3 cut(s)	1018, 1531, 1843
BciT130I	CCWGG	4 cut(s)	495, 1389, 1401, 1569
BciVI	GTATCC	2 cut(s)	345, 1103
BcoDI	GTCTC	7 cut(s)	293, 834, 916, 1098, 1738, 1843, 1848
BfaI	CTAG	3 cut(s)	1557, 2157, 2343
BfmI	CTRYAG	4 cut(s)	231, 391, 1236, 2291
BfuAI	ACCTGC	1 cut(s)	1229
BfuI	GTATCC	2 cut(s)	345, 1103
BglII	AGATCT	1 cut(s)	778
BisI	GCNGC	4 cut(s)	202, 685, 725, 1146
BlpI	GCTNAGC	1 cut(s)	991
BlsI	GCNGC	4 cut(s)	203, 686, 726, 1147
Bme1390I	CCNGG	4 cut(s)	495, 1389, 1401, 1569
BmeT110I	CYCGRG	2 cut(s)	344, 2248
BmgBI	CACGTC	2 cut(s)	262, 331
BmiI	GGNNCC	3 cut(s)	438, 1131, 1309
BmrFI	CCNGG	4 cut(s)	495, 1389, 1401, 1569
BmrI	ACTGGG	2 cut(s)	1429, 1747
BmsI	GCATC	7 cut(s)	364, 376, 429, 475, 592, 1018, 1870
BmuI	ACTGGG	2 cut(s)	1429, 1747
BpiI	GAAGAC	4 cut(s)	136, 570, 1632, 1740
BpmI	CTGGAG	5 cut(s)	861, 1804, 1987, 2032, 2098
Bpu1102I	GCTNAGC	1 cut(s)	991
BpuEI	CTTGAG	1 cut(s)	749
Bsa29I	ATCGAT	2 cut(s)	1098, 1562
BsaBI	GATNNNNATC	1 cut(s)	1860
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	1848
BsaJI	CCNNGG	3 cut(s)	345, 1162, 1223
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	5 cut(s)	416, 446, 968, 1574, 1619
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	9 cut(s)	421, 1337, 1347, 1424, 1624, 1742, 1821, 2004, 2277
Bse21I	CCTNAGG	2 cut(s)	552, 1185
Bse3DI	GCAATG	1 cut(s)	816
Bse8I	GATNNNNATC	1 cut(s)	1860
BseBI	CCWGG	4 cut(s)	495, 1389, 1401, 1569
BseCI	ATCGAT	2 cut(s)	1098, 1562
BseDI	CCNNGG	3 cut(s)	345, 1162, 1223
BseJI	GATNNNNATC	1 cut(s)	1860
BseLI	CCNNNNNNNGG	5 cut(s)	416, 446, 968, 1574, 1619
BseMI	GCAATG	1 cut(s)	816
BseMII	CTCAG	3 cut(s)	543, 1176, 1859
BseNI	ACTGG	9 cut(s)	421, 1337, 1347, 1424, 1624, 1742, 1821, 2004, 2277
BseRI	GAGGAG	1 cut(s)	1693
BseSI	GKGCMC	1 cut(s)	2331
BseXI	GCAGC	3 cut(s)	671, 711, 1157
BseYI	CCCAGC	1 cut(s)	278
BsgI	GTGCAG	1 cut(s)	1068
BshFI	GGCC	2 cut(s)	550, 1219
BshTI	ACCGGT	1 cut(s)	161
BshVI	ATCGAT	2 cut(s)	1098, 1562
BsiHKAI	GWGCWC	1 cut(s)	2331
BsiHKCI	CYCGRG	2 cut(s)	344, 2248
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	729
BslI	CCNNNNNNNGG	5 cut(s)	416, 446, 968, 1574, 1619
BsmAI	GTCTC	7 cut(s)	293, 834, 916, 1098, 1738, 1843, 1848
BsmBI	CGTCTC	1 cut(s)	1098
BsmFI	GGGAC	1 cut(s)	729
BsnI	GGCC	2 cut(s)	550, 1219
Bso31I	GGTCTC	1 cut(s)	1848
BsoBI	CYCGRG	2 cut(s)	344, 2248
Bsp1286I	GDGCHC	2 cut(s)	1432, 2331
Bsp1720I	GCTNAGC	1 cut(s)	991
BspACI	CCGC	6 cut(s)	5, 103, 135, 201, 287, 1448
BspANI	GGCC	2 cut(s)	550, 1219
BspCNI	CTCAG	3 cut(s)	544, 1177, 1858
BspDI	ATCGAT	2 cut(s)	1098, 1562
BspHI	TCATGA	1 cut(s)	2362
BspLI	GGNNCC	3 cut(s)	438, 1131, 1309
BspMAI	CTGCAG	3 cut(s)	235, 395, 1240
BspMI	ACCTGC	1 cut(s)	1229
BspPI	GGATC	6 cut(s)	244, 587, 985, 1293, 1498, 2260
BspTNI	GGTCTC	1 cut(s)	1848
BsrBI	CCGCTC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	816
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	9 cut(s)	421, 1337, 1347, 1424, 1624, 1742, 1821, 2004, 2277
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	3 cut(s)	345, 1162, 1223
BssNAI	GTATAC	1 cut(s)	713
BssNI	GRCGYC	1 cut(s)	153
BssSI	CACGAG	1 cut(s)	1122
BssT1I	CCWWGG	2 cut(s)	1162, 1223
Bst1107I	GTATAC	1 cut(s)	713
Bst2BI	CACGAG	1 cut(s)	1122
Bst2UI	CCWGG	4 cut(s)	495, 1389, 1401, 1569
Bst6I	CTCTTC	5 cut(s)	1614, 1904, 2013, 2062, 2128
BstACI	GRCGYC	1 cut(s)	153
BstAPI	GCANNNNNTGC	3 cut(s)	611, 1001, 1376
BstC8I	GCNNGC	5 cut(s)	391, 441, 689, 807, 1175
BstDEI	CTNAG	5 cut(s)	552, 800, 991, 1185, 1845
BstENI	CCTNNNNNAGG	1 cut(s)	966
BstHHI	GCGC	2 cut(s)	1033, 2358
BstMAI	GTCTC	7 cut(s)	293, 834, 916, 1098, 1738, 1843, 1848
BstMWI	GCNNNNNNNGC	5 cut(s)	239, 611, 645, 1001, 1376
BstNI	CCWGG	4 cut(s)	495, 1389, 1401, 1569
BstNSI	RCATGY	4 cut(s)	248, 614, 1060, 1540
BstSCI	CCNGG	4 cut(s)	493, 1387, 1399, 1567
BstSFI	CTRYAG	4 cut(s)	231, 391, 1236, 2291
BstSLI	GKGCMC	1 cut(s)	2331
BstV1I	GCAGC	3 cut(s)	671, 711, 1157
BstV2I	GAAGAC	4 cut(s)	136, 570, 1632, 1740
BstX2I	RGATCY	3 cut(s)	778, 977, 2252
BstXI	CCANNNNNNTGG	1 cut(s)	1419
BstYI	RGATCY	3 cut(s)	778, 977, 2252
BstZ17I	GTATAC	1 cut(s)	713
Bsu15I	ATCGAT	2 cut(s)	1098, 1562
Bsu36I	CCTNAGG	2 cut(s)	552, 1185
BsuI	GTATCC	2 cut(s)	345, 1103
BsuRI	GGCC	2 cut(s)	550, 1219
BsuTUI	ATCGAT	2 cut(s)	1098, 1562
BtrI	CACGTC	2 cut(s)	262, 331
BtsI	GCAGTG	2 cut(s)	2081, 2147
BtsIMutI	CAGTG	7 cut(s)	843, 1828, 2020, 2081, 2089, 2147, 2284
BveI	ACCTGC	1 cut(s)	1229
Cac8I	GCNNGC	5 cut(s)	391, 441, 689, 807, 1175
CaiI	CAGNNNCTG	1 cut(s)	1001
CciI	TCATGA	1 cut(s)	2362
CfoI	GCGC	2 cut(s)	1033, 2358
Cfr10I	RCCGGY	1 cut(s)	161
ClaI	ATCGAT	2 cut(s)	1098, 1562
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	172, 2419
CspAI	ACCGGT	1 cut(s)	161
CviQI	GTAC	2 cut(s)	172, 2419
DdeI	CTNAG	5 cut(s)	552, 800, 991, 1185, 1845
Eam1104I	CTCTTC	5 cut(s)	1614, 1904, 2013, 2062, 2128
EarI	CTCTTC	5 cut(s)	1614, 1904, 2013, 2062, 2128
EciI	GGCGGA	2 cut(s)	92, 276
Eco130I	CCWWGG	2 cut(s)	1162, 1223
Eco147I	AGGCCT	1 cut(s)	550
Eco24I	GRGCYC	1 cut(s)	1432
Eco31I	GGTCTC	1 cut(s)	1848
Eco32I	GATATC	1 cut(s)	2120
Eco81I	CCTNAGG	2 cut(s)	552, 1185
Eco88I	CYCGRG	2 cut(s)	344, 2248
EcoNI	CCTNNNNNAGG	1 cut(s)	966
EcoRI	GAATTC	2 cut(s)	894, 2208
EcoRII	CCWGG	4 cut(s)	493, 1387, 1399, 1567
EcoRV	GATATC	1 cut(s)	2120
EcoT14I	CCWWGG	2 cut(s)	1162, 1223
EcoT38I	GRGCYC	1 cut(s)	1432
ErhI	CCWWGG	2 cut(s)	1162, 1223
Esp3I	CGTCTC	1 cut(s)	1098
FaqI	GGGAC	1 cut(s)	729
FauI	CCCGC	1 cut(s)	1455
FauNDI	CATATG	1 cut(s)	1135
FblI	GTMKAC	3 cut(s)	48, 306, 712
Fnu4HI	GCNGC	4 cut(s)	202, 685, 725, 1146
FriOI	GRGCYC	1 cut(s)	1432
Fsp4HI	GCNGC	4 cut(s)	202, 685, 725, 1146
FspBI	CTAG	3 cut(s)	1557, 2157, 2343
GlaI	GCGC	2 cut(s)	1032, 2357
GluI	GCNGC	4 cut(s)	202, 685, 725, 1146
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	5 cut(s)	861, 1804, 1987, 2032, 2098
HaeIII	GGCC	2 cut(s)	550, 1219
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	2 cut(s)	1033, 2358
Hin1I	GRCGYC	1 cut(s)	153
Hin6I	GCGC	2 cut(s)	1031, 2356
HinP1I	GCGC	2 cut(s)	1031, 2356
HincII	GTYRAC	4 cut(s)	49, 265, 307, 328
HindII	GTYRAC	4 cut(s)	49, 265, 307, 328
HinfI	GANTC	9 cut(s)	41, 131, 283, 827, 887, 998, 1564, 2153, 2164
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	2 cut(s)	1005, 1634
Hpy99I	CGWCG	2 cut(s)	50, 155
HpyAV	CCTTC	4 cut(s)	50, 364, 727, 1658
HpyCH4IV	ACGT	3 cut(s)	261, 330, 715
HpyF10VI	GCNNNNNNNGC	5 cut(s)	239, 611, 645, 1001, 1376
HpyF3I	CTNAG	5 cut(s)	552, 800, 991, 1185, 1845
HpySE526I	ACGT	3 cut(s)	261, 330, 715
Hsp92I	GRCGYC	1 cut(s)	153
HspAI	GCGC	2 cut(s)	1031, 2356
Lsp1109I	GCAGC	3 cut(s)	671, 711, 1157
LweI	GCATC	7 cut(s)	364, 376, 429, 475, 592, 1018, 1870
MaeI	CTAG	3 cut(s)	1557, 2157, 2343
MaeII	ACGT	3 cut(s)	261, 330, 715
MaeIII	GTNAC	5 cut(s)	1007, 1823, 2078, 2243, 2306
MbiI	CCGCTC	1 cut(s)	137
MflI	RGATCY	3 cut(s)	778, 977, 2252
MhlI	GDGCHC	2 cut(s)	1432, 2331
MlyI	GAGTC	2 cut(s)	836, 2173
MmeI	TCCRAC	2 cut(s)	174, 2141
MroXI	GAANNNNTTC	1 cut(s)	502
MseI	TTAA	3 cut(s)	570, 839, 1322
MslI	CAYNNNNRTG	4 cut(s)	249, 507, 1044, 1938
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	4 cut(s)	495, 1389, 1401, 1569
MvaI	CCWGG	4 cut(s)	495, 1389, 1401, 1569
MwoI	GCNNNNNNNGC	5 cut(s)	239, 611, 645, 1001, 1376
NdeI	CATATG	1 cut(s)	1135
NlaIV	GGNNCC	3 cut(s)	438, 1131, 1309
NmeAIII	GCCGAG	1 cut(s)	1121
NmuCI	GTSAC	4 cut(s)	1007, 1823, 2078, 2306
NspI	RCATGY	4 cut(s)	248, 614, 1060, 1540
PagI	TCATGA	1 cut(s)	2362
PaqCI	CACCTGC	1 cut(s)	1229
PceI	AGGCCT	1 cut(s)	550
PciI	ACATGT	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 147, 336
PdmI	GAANNNNTTC	1 cut(s)	502
PfeI	GAWTC	7 cut(s)	41, 131, 283, 887, 998, 1564, 2153
PflFI	GACNNNGTC	1 cut(s)	541
PflMI	CCANNNNNTGG	2 cut(s)	416, 1574
PfoI	TCCNGGA	2 cut(s)	493, 1387
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	4 cut(s)	203, 686, 726, 1147
PleI	GAGTC	2 cut(s)	835, 2172
PpsI	GAGTC	2 cut(s)	835, 2172
PscI	ACATGT	1 cut(s)	244
Psp6I	CCWGG	4 cut(s)	493, 1387, 1399, 1567
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	4 cut(s)	493, 1387, 1399, 1567
PspN4I	GGNNCC	3 cut(s)	438, 1131, 1309
PsrI	GAACNNNNNNTAC	2 cut(s)	513, 545
PstI	CTGCAG	3 cut(s)	235, 395, 1240
PstNI	CAGNNNCTG	1 cut(s)	1001
PsuI	RGATCY	3 cut(s)	778, 977, 2252
PsyI	GACNNNGTC	1 cut(s)	541
RsaI	GTAC	2 cut(s)	173, 2420
RsaNI	GTAC	2 cut(s)	172, 2419
RseI	CAYNNNNRTG	4 cut(s)	249, 507, 1044, 1938
SalI	GTCGAC	2 cut(s)	47, 305
SaqAI	TTAA	3 cut(s)	570, 839, 1322
SatI	GCNGC	4 cut(s)	202, 685, 725, 1146
SbfI	CCTGCAGG	1 cut(s)	235
SchI	GAGTC	2 cut(s)	836, 2173
ScrFI	CCNGG	4 cut(s)	495, 1389, 1401, 1569
SdaI	CCTGCAGG	1 cut(s)	235
SduI	GDGCHC	2 cut(s)	1432, 2331
SfaNI	GCATC	7 cut(s)	364, 376, 429, 475, 592, 1018, 1870
SfcI	CTRYAG	4 cut(s)	231, 391, 1236, 2291
SmiMI	CAYNNNNRTG	4 cut(s)	249, 507, 1044, 1938
SmlI	CTYRAG	1 cut(s)	728
SmoI	CTYRAG	1 cut(s)	728
Sse8387I	CCTGCAGG	1 cut(s)	235
SseBI	AGGCCT	1 cut(s)	550
SsiI	CCGC	6 cut(s)	5, 103, 135, 201, 287, 1448
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	3 cut(s)	1557, 2157, 2343
StuI	AGGCCT	1 cut(s)	550
StyD4I	CCNGG	4 cut(s)	493, 1387, 1399, 1567
StyI	CCWWGG	2 cut(s)	1162, 1223
TaiI	ACGT	3 cut(s)	264, 333, 718
TaqI	TCGA	7 cut(s)	39, 48, 54, 61, 306, 1098, 1562
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	7 cut(s)	41, 131, 283, 887, 998, 1564, 2153
Tru1I	TTAA	3 cut(s)	570, 839, 1322
Tru9I	TTAA	3 cut(s)	570, 839, 1322
TscAI	CASTG	7 cut(s)	850, 1828, 2020, 2081, 2089, 2147, 2284
TseFI	GTSAC	4 cut(s)	1007, 1823, 2078, 2306
TseI	GCWGC	3 cut(s)	684, 724, 1145
Tsp45I	GTSAC	4 cut(s)	1007, 1823, 2078, 2306
TspDTI	ATGAA	8 cut(s)	420, 647, 1355, 1517, 1746, 1880, 2076, 2409
TspGWI	ACGGA	5 cut(s)	34, 186, 199, 1122, 1976
TspRI	CASTG	7 cut(s)	850, 1828, 2020, 2081, 2089, 2147, 2284
Tth111I	GACNNNGTC	1 cut(s)	541
Van91I	CCANNNNNTGG	2 cut(s)	416, 1574
VneI	GTGCAC	1 cut(s)	2327
XagI	CCTNNNNNAGG	1 cut(s)	966
XapI	RAATTY	9 cut(s)	17, 35, 192, 835, 894, 1065, 1649, 1699, 2208
XbaI	TCTAGA	1 cut(s)	1556
XceI	RCATGY	4 cut(s)	248, 614, 1060, 1540
XmiI	GTMKAC	3 cut(s)	48, 306, 712
XmnI	GAANNNNTTC	1 cut(s)	502
XspI	CTAG	3 cut(s)	1557, 2157, 2343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.