Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0009656

Physical Location & Seq

Genomic Coordinates Reverse (-)

66178718 .. 66185976

Gene Structure 7259 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG508200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2445 bp

ATGGCGGTTCAGTTCAAATTCCGAAGCTCTGCGAAATTCGATTCCGTCGACCTCGAAGGTCGAGCCTCAATCCCCGTTCGTGATCTCAAAGCCAAAATCATCCGCCACAACAACCTCAACATCTGTCAAGATTCCGATCTCGTCTTCTCCGACGCCATAACCGGTCAAGAGTACACTAACGAGAATATTCAAATTCCGTGCGGCTCGTCCGTGATTATCAAGAGAGTTCCTGCAGGATCGGCACATGTGGATATGCCTCACTTCAACTGCAAGGAAGCTGGGAATCCGCCGAATGTTGAGACAGTCGACTTTGATGACTTTGGGGTTGACGTGTATCCCGTTCCCGAGGCAACCTTCGTCTGTTCTGGTTTGGATGCAGACAAGGATGCCCGCAGCAGTCGGGGATATGAACCAAATACTGGCATCACAAGATGTTTGGAGCCAGCAGTAGGAGGATGTCAGAAACTTGAAGCAAGTGGGATTAGTGATGCTATTCCAGGAAGTCATTCGCATGGTGGAGTTGAACAAATCTTACCACAGACAAACTCAAAGCCTGAGGTTCAAGAAGACTTTAATTTGGAAAAGATGGGTTGTGATCCCGTAGATACAAAACATGCTGATATGCCATCAGAGATGAAATGCTCTCTATGCAACTCGTTTTTCAAGGAGGCTGTGATGATACCCTGCTGCCAGCACAGTTTTTGTGAGAAATGTATACATCAAATGCTGCTTGAGAAGGCAAGATGTCCCAAGTGTTTTTCAACCAAGTGCAGAATTGAAGATCTGCTACCAAATATATCTCTTAGGCAAGCAATGGACCATTTCCAAGAGTCTCAAAATTTAATCACTGTTCCAGATAATGCTTTTTGCCAATACGCTCCAGATGGAGAATCGGGAATTCAGGCAAAAGATGTCTCTTGTGGTGGTAGTATTTTTCAAAGGGAGTCAGAGTTGCCTCACTCTCCTGAAACAGGGATGGGATCTAATAATTGCTTAGCAGAATCTGCTTGTCACTCACCATTCAAAAATGATGCGCCGTATCATTTTGGTGCAAGAAACATGCAAAAAATTCCCAAGTTTTCGCACAAGAACAATCAAATCGATGGAGATGGATACGGTTATACTCGTGTGGCTCCATATGGCTCGGCAGCTTTTGATGATTTCCAAGGGGAAAGCAAGCCTATACCTAAGGAAGCTGAACCTGTAATCAAGAAAAAGAGGCCACCTTGGGTTTATACTGCAGGTGGTGGAAAAAGTTTTTTGGAGAGTGGGAGAAATAGAAAGGGGGATCGTGCCTGTTATATGTGTGGCTCCCCAGACCATTTAATAAGAGTGTGTCCAGTTGCTACCAGTCCACGCCCTATGCTTCATTCAGGAAATGCAGTCTTTCCAGGAGCTATGCCAGGTTATGTGCCACCATACTGGGATGGGGCTCTGTTGCCTCATACCCCGCCCTTTAGAAATCTATACGGAAATCATGGGATGACAGCTTTTGACACGTTGATCCCTCACACTCCTTTTTCTGTTCATCCATACATGCACACGCCATCCATGTATAGATCGATTCCAGGCTTTGGTGGATATATGGGAATGGGAGGTGTAGCACCTCTTCCTGAAACTGGTGAAGACTGTTATATAAGTCGTTCAGAATTTCTGGATCTTGAAGGTCAAGAAAAGAGGAGAAAACTTTCAAGGGAGAATTTTAGGAGAGATCAATCTTGTGATGACGATGAAGACTGGGGGAGGCATCAGTATAATGGGAGTGCAAGATTGCAAGAGCATAAATCTTTTGTAAACAGGGAAAAGTGTGTAAGCTACTCCAGTGACGGCTCTACTAAAAGGTCTCAGAGACAAGATCGGCATCGTAATCAGATAGATGATGACAACATTCATTTGGTTGGTCATCGGAAGAGTTCTCATTTGGTGGTTGGTCATCAGGATGGGAAACTGTATAATCCCACGGAGAAATCAAGTTCAGAATTAGATGATATGCCAAGTAGCTCCAGTTGGCACAGTGAAGAGAAACACAAACATTATCATAGAAGCTCCAGAAAGCAAAATGAAAGAAGAGAGCAGTGTGACGGTGATAAACACAAACACTATCATAGAAGCTCCAGATATCACAAGGAAAGAAGAGAGCAGTGTGGTAGTGATTCTAGTCGGAGTCATCATCAAAATATCATTGAGAAAGATGATAAGAGAAAGGGAATTCAGCATAATAACAAAAGGCACAAACATCACAGTAACTCGGGATCTGATTTAGAACACAGTGTTTCCAGTGATAAGAAGCTGCAGAAAGGGAGCAGTCACAATTTTAGAAAATCTGAGCACAATGCAAAGTCTAGTGTTGATGAGCGCAGTCATGACAGATGGAAAATGGTTAGTGGGTCAGATGAAGATAGTGGAGAAGATTATCGGTACTGTAAACGGAAAAGGGTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001701 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006275 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009792 GO:0009888 GO:0009889 GO:0009987 GO:0010556 GO:0016567 GO:0016604 GO:0016607 GO:0016740 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0030163 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0035264 GO:0036211 GO:0040007 GO:0043009 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048513 GO:0048568 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051603 GO:0051716 GO:0060255 GO:0060429 GO:0061053 GO:0061630 GO:0061659 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DWNN zf-C3HC4_2 zf-CCHC

Protein Analysis

814

Amino Acids

91.59

Weight (kDa)

7.27

Isoelectric Point (pI)

58.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DWNN	PF08783	3 - 77	1.9e-19	DWNN domain
zf-C3HC4_2	PF13923	213 - 252	1.8e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009656)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g31120 FvH4_2g31120 FvH4_2g31120 FvH4_2g31120 FvH4_2g31120 FvH4_2g31120
malus_domestica	MD08G1070600.v1.1 MD15G1051500.v1.1
prunus_persica	Prupe.1G405500_v2.0.a1 Prupe.1G405500_v2.0.a1 Prupe.1G405500_v2.0.a1
pyrus_communis	pycom08g05840 pycom15g04930
rosa_chinensis	RchiOBHm_Chr6g0311661
rosa_laevigata	RLG00000010383
rosa_roxburghii	Rroxscaffold_7G00157400
rosa_rugosa	Rorug06G0390500.1
rosa_samantha	Rh6AG505800 Rh6BG516600 Rh6CG522500 Rh6DG508200
rosa_wichuraiana	Rw6G044020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1232
Acc36I	ACCTGC	1 cut(s)	1232
AccB7I	CCANNNNNTGG	2 cut(s)	419, 1574
AccI	GTMKAC	3 cut(s)	48, 306, 715
AciI	CCGC	6 cut(s)	5, 103, 201, 287, 391, 1451
AclWI	GGATC	7 cut(s)	244, 590, 988, 1296, 1498, 1665, 2260
AcsI	RAATTY	9 cut(s)	17, 35, 192, 838, 897, 1068, 1649, 1699, 2208
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	2 cut(s)	173, 2420
AfiI	CCNNNNNNNGG	5 cut(s)	419, 449, 971, 1574, 1619
AflIII	ACRYGT	3 cut(s)	244, 330, 1497
AgeI	ACCGGT	1 cut(s)	161
AjiI	CACGTC	1 cut(s)	331
AjnI	CCWGG	4 cut(s)	496, 1390, 1402, 1567
Alw21I	GWGCWC	1 cut(s)	2331
Alw26I	GTCTC	5 cut(s)	293, 837, 919, 1843, 1848
AlwI	GGATC	7 cut(s)	244, 590, 988, 1296, 1498, 1665, 2260
AlwNI	CAGNNNCTG	1 cut(s)	1004
Ama87I	CYCGRG	2 cut(s)	344, 2248
AoxI	GGCC	1 cut(s)	1220
ApeKI	GCWGC	5 cut(s)	393, 687, 727, 1148, 2290
ApoI	RAATTY	9 cut(s)	17, 35, 192, 838, 897, 1068, 1649, 1699, 2208
AsiGI	ACCGGT	1 cut(s)	161
Asp700I	GAANNNNTTC	2 cut(s)	505, 1687
AspLEI	GCGC	2 cut(s)	1036, 2358
AspS9I	GGNCC	1 cut(s)	817
AsuHPI	GGTGA	3 cut(s)	1008, 1634, 2096
AvaI	CYCGRG	2 cut(s)	344, 2248
AvaII	GGWCC	1 cut(s)	817
AxyI	CCTNAGG	2 cut(s)	555, 1188
BanII	GRGCYC	1 cut(s)	1435
BarI	GAAGNNNNNNTAC	4 cut(s)	771, 803, 1593, 1625
BauI	CACGAG	1 cut(s)	1125
BbsI	GAAGAC	4 cut(s)	136, 573, 1632, 1740
Bbv12I	GWGCWC	1 cut(s)	2331
BbvI	GCAGC	5 cut(s)	405, 674, 714, 1160, 2277
BceAI	ACGGC	2 cut(s)	1021, 1843
BciT130I	CCWGG	4 cut(s)	498, 1392, 1404, 1569
BciVI	GTATCC	2 cut(s)	345, 1106
BcoDI	GTCTC	5 cut(s)	293, 837, 919, 1843, 1848
BfaI	CTAG	2 cut(s)	2157, 2343
BfmI	CTRYAG	3 cut(s)	231, 1239, 2291
BfuAI	ACCTGC	1 cut(s)	1232
BfuI	GTATCC	2 cut(s)	345, 1106
BglII	AGATCT	1 cut(s)	781
BisI	GCNGC	6 cut(s)	202, 394, 688, 728, 1149, 2291
BlpI	GCTNAGC	1 cut(s)	994
BlsI	GCNGC	6 cut(s)	203, 395, 689, 729, 1150, 2292
Bme1390I	CCNGG	4 cut(s)	498, 1392, 1404, 1569
Bme18I	GGWCC	1 cut(s)	817
BmeT110I	CYCGRG	2 cut(s)	344, 2248
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	817
BmiI	GGNNCC	3 cut(s)	441, 1134, 1312
BmrFI	CCNGG	4 cut(s)	498, 1392, 1404, 1569
BmrI	ACTGGG	2 cut(s)	1432, 1747
BmsI	GCATC	7 cut(s)	364, 376, 432, 478, 1021, 1756, 1870
BmuI	ACTGGG	2 cut(s)	1432, 1747
BpiI	GAAGAC	4 cut(s)	136, 573, 1632, 1740
BpmI	CTGGAG	5 cut(s)	864, 1804, 1987, 2032, 2098
Bpu1102I	GCTNAGC	1 cut(s)	994
BpuEI	CTTGAG	1 cut(s)	752
Bsa29I	ATCGAT	2 cut(s)	1101, 1562
BsaBI	GATNNNNATC	2 cut(s)	135, 1860
BsaHI	GRCGYC	1 cut(s)	153
BsaI	GGTCTC	1 cut(s)	1848
BsaJI	CCNNGG	4 cut(s)	345, 1165, 1226, 1959
BsaWI	WCCGGW	1 cut(s)	161
BsaXI	ACNNNNNCTCC	2 cut(s)	935, 965
Bsc4I	CCNNNNNNNGG	5 cut(s)	419, 449, 971, 1574, 1619
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	9 cut(s)	424, 1340, 1350, 1427, 1624, 1742, 1821, 2004, 2277
Bse21I	CCTNAGG	2 cut(s)	555, 1188
Bse3DI	GCAATG	1 cut(s)	819
Bse8I	GATNNNNATC	2 cut(s)	135, 1860
BseBI	CCWGG	4 cut(s)	498, 1392, 1404, 1569
BseCI	ATCGAT	2 cut(s)	1101, 1562
BseDI	CCNNGG	4 cut(s)	345, 1165, 1226, 1959
BseJI	GATNNNNATC	2 cut(s)	135, 1860
BseLI	CCNNNNNNNGG	5 cut(s)	419, 449, 971, 1574, 1619
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	3 cut(s)	546, 1859, 2316
BseNI	ACTGG	9 cut(s)	424, 1340, 1350, 1427, 1624, 1742, 1821, 2004, 2277
BseRI	GAGGAG	1 cut(s)	1693
BseXI	GCAGC	5 cut(s)	405, 674, 714, 1160, 2277
BseYI	CCCAGC	1 cut(s)	278
BsgI	GTGCAG	1 cut(s)	790
BshFI	GGCC	1 cut(s)	1222
BshTI	ACCGGT	1 cut(s)	161
BshVI	ATCGAT	2 cut(s)	1101, 1562
BsiHKAI	GWGCWC	1 cut(s)	2331
BsiHKCI	CYCGRG	2 cut(s)	344, 2248
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	732
BslI	CCNNNNNNNGG	5 cut(s)	419, 449, 971, 1574, 1619
BsmAI	GTCTC	5 cut(s)	293, 837, 919, 1843, 1848
BsmFI	GGGAC	1 cut(s)	732
BsnI	GGCC	1 cut(s)	1222
Bso31I	GGTCTC	1 cut(s)	1848
BsoBI	CYCGRG	2 cut(s)	344, 2248
Bsp1286I	GDGCHC	2 cut(s)	1435, 2331
Bsp1720I	GCTNAGC	1 cut(s)	994
BspACI	CCGC	6 cut(s)	5, 103, 201, 287, 391, 1451
BspANI	GGCC	1 cut(s)	1222
BspCNI	CTCAG	3 cut(s)	547, 1858, 2317
BspDI	ATCGAT	2 cut(s)	1101, 1562
BspHI	TCATGA	1 cut(s)	2362
BspLI	GGNNCC	3 cut(s)	441, 1134, 1312
BspMAI	CTGCAG	3 cut(s)	235, 1243, 2295
BspMI	ACCTGC	1 cut(s)	1232
BspPI	GGATC	7 cut(s)	244, 590, 988, 1296, 1498, 1665, 2260
BspTNI	GGTCTC	1 cut(s)	1848
BsrDI	GCAATG	1 cut(s)	819
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	9 cut(s)	424, 1340, 1350, 1427, 1624, 1742, 1821, 2004, 2277
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	4 cut(s)	345, 1165, 1226, 1959
BssNAI	GTATAC	1 cut(s)	716
BssNI	GRCGYC	1 cut(s)	153
BssSI	CACGAG	1 cut(s)	1125
BssT1I	CCWWGG	2 cut(s)	1165, 1226
Bst1107I	GTATAC	1 cut(s)	716
Bst2BI	CACGAG	1 cut(s)	1125
Bst2UI	CCWGG	4 cut(s)	498, 1392, 1404, 1569
Bst6I	CTCTTC	5 cut(s)	1614, 1904, 2013, 2062, 2128
BstACI	GRCGYC	1 cut(s)	153
BstAPI	GCANNNNNTGC	1 cut(s)	1004
BstC8I	GCNNGC	5 cut(s)	391, 444, 692, 810, 1178
BstDEI	CTNAG	6 cut(s)	555, 803, 994, 1188, 1845, 2325
BstDSI	CCRYGG	1 cut(s)	1959
BstENI	CCTNNNNNAGG	1 cut(s)	969
BstHHI	GCGC	2 cut(s)	1036, 2358
BstMAI	GTCTC	5 cut(s)	293, 837, 919, 1843, 1848
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 648, 1004
BstNI	CCWGG	4 cut(s)	498, 1392, 1404, 1569
BstNSI	RCATGY	4 cut(s)	248, 617, 1063, 1540
BstSCI	CCNGG	4 cut(s)	496, 1390, 1402, 1567
BstSFI	CTRYAG	3 cut(s)	231, 1239, 2291
BstV1I	GCAGC	5 cut(s)	405, 674, 714, 1160, 2277
BstV2I	GAAGAC	4 cut(s)	136, 573, 1632, 1740
BstX2I	RGATCY	4 cut(s)	781, 980, 1657, 2252
BstXI	CCANNNNNNTGG	1 cut(s)	1422
BstYI	RGATCY	4 cut(s)	781, 980, 1657, 2252
BstZ17I	GTATAC	1 cut(s)	716
Bsu15I	ATCGAT	2 cut(s)	1101, 1562
Bsu36I	CCTNAGG	2 cut(s)	555, 1188
BsuI	GTATCC	2 cut(s)	345, 1106
BsuRI	GGCC	1 cut(s)	1222
BsuTUI	ATCGAT	2 cut(s)	1101, 1562
BtgI	CCRYGG	1 cut(s)	1959
BtrI	CACGTC	1 cut(s)	331
BtsI	GCAGTG	2 cut(s)	2081, 2147
BtsIMutI	CAGTG	7 cut(s)	846, 1828, 2020, 2081, 2147, 2275, 2284
BveI	ACCTGC	1 cut(s)	1232
Cac8I	GCNNGC	5 cut(s)	391, 444, 692, 810, 1178
CaiI	CAGNNNCTG	1 cut(s)	1004
CciI	TCATGA	1 cut(s)	2362
CfoI	GCGC	2 cut(s)	1036, 2358
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	1 cut(s)	817
ClaI	ATCGAT	2 cut(s)	1101, 1562
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	172, 2419
CspAI	ACCGGT	1 cut(s)	161
CviAII	CATG	8 cut(s)	245, 512, 614, 1060, 1478, 1537, 1552, 2363
CviQI	GTAC	2 cut(s)	172, 2419
DdeI	CTNAG	6 cut(s)	555, 803, 994, 1188, 1845, 2325
Eam1104I	CTCTTC	5 cut(s)	1614, 1904, 2013, 2062, 2128
EarI	CTCTTC	5 cut(s)	1614, 1904, 2013, 2062, 2128
EciI	GGCGGA	2 cut(s)	92, 276
Eco130I	CCWWGG	2 cut(s)	1165, 1226
Eco24I	GRGCYC	1 cut(s)	1435
Eco31I	GGTCTC	1 cut(s)	1848
Eco32I	GATATC	1 cut(s)	2120
Eco47I	GGWCC	1 cut(s)	817
Eco81I	CCTNAGG	2 cut(s)	555, 1188
Eco88I	CYCGRG	2 cut(s)	344, 2248
EcoNI	CCTNNNNNAGG	1 cut(s)	969
EcoRI	GAATTC	2 cut(s)	897, 2208
EcoRII	CCWGG	4 cut(s)	496, 1390, 1402, 1567
EcoRV	GATATC	1 cut(s)	2120
EcoT14I	CCWWGG	2 cut(s)	1165, 1226
EcoT38I	GRGCYC	1 cut(s)	1435
ErhI	CCWWGG	2 cut(s)	1165, 1226
FaeI	CATG	8 cut(s)	248, 515, 617, 1063, 1481, 1540, 1555, 2366
FaqI	GGGAC	1 cut(s)	732
FatI	CATG	8 cut(s)	244, 511, 613, 1059, 1477, 1536, 1551, 2362
FauI	CCCGC	2 cut(s)	398, 1458
FauNDI	CATATG	1 cut(s)	1138
FblI	GTMKAC	3 cut(s)	48, 306, 715
Fnu4HI	GCNGC	6 cut(s)	202, 394, 688, 728, 1149, 2291
FriOI	GRGCYC	1 cut(s)	1435
Fsp4HI	GCNGC	6 cut(s)	202, 394, 688, 728, 1149, 2291
FspBI	CTAG	2 cut(s)	2157, 2343
GlaI	GCGC	2 cut(s)	1035, 2357
GluI	GCNGC	6 cut(s)	202, 394, 688, 728, 1149, 2291
GsaI	CCCAGC	1 cut(s)	282
GsuI	CTGGAG	5 cut(s)	864, 1804, 1987, 2032, 2098
HaeIII	GGCC	1 cut(s)	1222
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	2 cut(s)	1036, 2358
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	8 cut(s)	248, 515, 617, 1063, 1481, 1540, 1555, 2366
Hin6I	GCGC	2 cut(s)	1034, 2356
HinP1I	GCGC	2 cut(s)	1034, 2356
HincII	GTYRAC	3 cut(s)	49, 307, 328
HindII	GTYRAC	3 cut(s)	49, 307, 328
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	3 cut(s)	1008, 1634, 2096
Hpy166II	GTNNAC	8 cut(s)	49, 174, 307, 328, 716, 1355, 1795, 2426
Hpy8I	GTNNAC	8 cut(s)	49, 174, 307, 328, 716, 1355, 1795, 2426
Hpy99I	CGWCG	2 cut(s)	50, 155
HpyAV	CCTTC	4 cut(s)	50, 364, 730, 1658
HpyCH4IV	ACGT	2 cut(s)	330, 1499
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 648, 1004
HpyF3I	CTNAG	6 cut(s)	555, 803, 994, 1188, 1845, 2325
HpySE526I	ACGT	2 cut(s)	330, 1499
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	8 cut(s)	248, 515, 617, 1063, 1481, 1540, 1555, 2366
HspAI	GCGC	2 cut(s)	1034, 2356
LmnI	GCTCC	9 cut(s)	439, 883, 1138, 1316, 1394, 2006, 2051, 2117, 2301
Lsp1109I	GCAGC	5 cut(s)	405, 674, 714, 1160, 2277
LweI	GCATC	7 cut(s)	364, 376, 432, 478, 1021, 1756, 1870
MaeI	CTAG	2 cut(s)	2157, 2343
MaeII	ACGT	2 cut(s)	330, 1499
MaeIII	GTNAC	5 cut(s)	1010, 1823, 2078, 2243, 2306
MflI	RGATCY	4 cut(s)	781, 980, 1657, 2252
MhlI	GDGCHC	2 cut(s)	1435, 2331
MlyI	GAGTC	3 cut(s)	839, 953, 2173
MmeI	TCCRAC	2 cut(s)	174, 2141
MroXI	GAANNNNTTC	2 cut(s)	505, 1687
MseI	TTAA	3 cut(s)	573, 842, 1325
MslI	CAYNNNNRTG	3 cut(s)	510, 1047, 1938
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	4 cut(s)	498, 1392, 1404, 1569
MvaI	CCWGG	4 cut(s)	498, 1392, 1404, 1569
MwoI	GCNNNNNNNGC	3 cut(s)	239, 648, 1004
NdeI	CATATG	1 cut(s)	1138
NlaIII	CATG	8 cut(s)	248, 515, 617, 1063, 1481, 1540, 1555, 2366
NlaIV	GGNNCC	3 cut(s)	441, 1134, 1312
NmeAIII	GCCGAG	1 cut(s)	1124
NmuCI	GTSAC	4 cut(s)	1010, 1823, 2078, 2306
NspI	RCATGY	4 cut(s)	248, 617, 1063, 1540
PagI	TCATGA	1 cut(s)	2362
PaqCI	CACCTGC	1 cut(s)	1232
PciI	ACATGT	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	3 cut(s)	45, 147, 336
PdmI	GAANNNNTTC	2 cut(s)	505, 1687
PfeI	GAWTC	7 cut(s)	41, 131, 283, 890, 1001, 1564, 2153
PflMI	CCANNNNNTGG	2 cut(s)	419, 1574
PfoI	TCCNGGA	2 cut(s)	496, 1390
PinAI	ACCGGT	1 cut(s)	161
PkrI	GCNGC	6 cut(s)	203, 395, 689, 729, 1150, 2292
PleI	GAGTC	3 cut(s)	838, 952, 2172
PpsI	GAGTC	3 cut(s)	838, 952, 2172
PscI	ACATGT	1 cut(s)	244
Psp6I	CCWGG	4 cut(s)	496, 1390, 1402, 1567
PspFI	CCCAGC	1 cut(s)	278
PspGI	CCWGG	4 cut(s)	496, 1390, 1402, 1567
PspN4I	GGNNCC	3 cut(s)	441, 1134, 1312
PspPI	GGNCC	1 cut(s)	817
PsrI	GAACNNNNNNTAC	2 cut(s)	516, 548
PstI	CTGCAG	3 cut(s)	235, 1243, 2295
PstNI	CAGNNNCTG	1 cut(s)	1004
PsuI	RGATCY	4 cut(s)	781, 980, 1657, 2252
RsaI	GTAC	2 cut(s)	173, 2420
RsaNI	GTAC	2 cut(s)	172, 2419
RseI	CAYNNNNRTG	3 cut(s)	510, 1047, 1938
SalI	GTCGAC	2 cut(s)	47, 305
SaqAI	TTAA	3 cut(s)	573, 842, 1325
SatI	GCNGC	6 cut(s)	202, 394, 688, 728, 1149, 2291
Sau96I	GGNCC	1 cut(s)	817
SbfI	CCTGCAGG	1 cut(s)	235
SchI	GAGTC	3 cut(s)	839, 953, 2173
ScrFI	CCNGG	4 cut(s)	498, 1392, 1404, 1569
SdaI	CCTGCAGG	1 cut(s)	235
SduI	GDGCHC	2 cut(s)	1435, 2331
SfaNI	GCATC	7 cut(s)	364, 376, 432, 478, 1021, 1756, 1870
SfcI	CTRYAG	3 cut(s)	231, 1239, 2291
SinI	GGWCC	1 cut(s)	817
SmiMI	CAYNNNNRTG	3 cut(s)	510, 1047, 1938
SmlI	CTYRAG	1 cut(s)	731
SmoI	CTYRAG	1 cut(s)	731
Sse8387I	CCTGCAGG	1 cut(s)	235
SsiI	CCGC	6 cut(s)	5, 103, 201, 287, 391, 1451
SspI	AATATT	1 cut(s)	187
SspMI	CTAG	2 cut(s)	2157, 2343
StyD4I	CCNGG	4 cut(s)	496, 1390, 1402, 1567
StyI	CCWWGG	2 cut(s)	1165, 1226
TaiI	ACGT	2 cut(s)	333, 1502
TaqI	TCGA	7 cut(s)	39, 48, 54, 61, 306, 1101, 1562
TatI	WGTACW	1 cut(s)	171
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	7 cut(s)	41, 131, 283, 890, 1001, 1564, 2153
Tru1I	TTAA	3 cut(s)	573, 842, 1325
Tru9I	TTAA	3 cut(s)	573, 842, 1325
TscAI	CASTG	7 cut(s)	853, 1828, 2020, 2081, 2147, 2275, 2284
TseFI	GTSAC	4 cut(s)	1010, 1823, 2078, 2306
TseI	GCWGC	5 cut(s)	393, 687, 727, 1148, 2290
Tsp45I	GTSAC	4 cut(s)	1010, 1823, 2078, 2306
TspDTI	ATGAA	8 cut(s)	423, 650, 1358, 1517, 1746, 1880, 2076, 2409
TspGWI	ACGGA	6 cut(s)	34, 186, 199, 1485, 1976, 2443
TspRI	CASTG	7 cut(s)	853, 1828, 2020, 2081, 2147, 2275, 2284
Van91I	CCANNNNNTGG	2 cut(s)	419, 1574
VpaK11BI	GGWCC	1 cut(s)	817
XagI	CCTNNNNNAGG	1 cut(s)	969
XapI	RAATTY	9 cut(s)	17, 35, 192, 838, 897, 1068, 1649, 1699, 2208
XceI	RCATGY	4 cut(s)	248, 617, 1063, 1540
XmiI	GTMKAC	3 cut(s)	48, 306, 715
XmnI	GAANNNNTTC	2 cut(s)	505, 1687
XspI	CTAG	2 cut(s)	2157, 2343

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.