Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015732

Physical Location & Seq

Genomic Coordinates Reverse (-)

5743944 .. 5747781

Gene Structure 3838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16570

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGAAAGCTTTGGAAATGTTATCCCCTCAAGATGCTGAAGCCTGCAGCATAAGGGAGGAACTTGATAAACTGATGACACTGCAGCAGCCTTTAAGTGGAAGTTGTAACAATTCATCGGAGACCGCAAAAGATGCAACTGTAGAGCATTTAAAAGCAGCACTCGTAGAAATTCAACTATGTTCCAGGTTGGAGTCTCTGTTACTAAAGAAGAAATCCTTGAACAATGGGGACTCACCTGAGCTGCACACTGAAAAGGTCGAAAAATTGAAAGTATTATCAGAATCTCTTGCTAATTCCACCTCACAAGCAGAAAAGCGCATTTTGGACCACAGTTTTGAACTTCGCTTTCATTTTGGAATGGTAAGAGACTTGGAAAGGGAGGATTTCATACATGAAAGCTTTGGAAATGTTATCCCCTCAAGGTATGAAATCCTGGATCCATCATTTTTTTTTTCCCATATAGGTAGGAACATAGGCGATAATGAAAGCAAAGAAGTCTACAATAGTTTCTTACTGAAAAACTGTCCGAGTTGTATAACAGTAGATAGGCACAGATTGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

21.33

Weight (kDa)

5.53

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015732)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318791 RchiOBHm_Chr1g0356591 RchiOBHm_Chr1g0376421 RchiOBHm_Chr7g0185661
rosa_roxburghii	Rroxscaffold_1G00021380 Rroxscaffold_1G00025880
rosa_rugosa	Rorug01G0406000 Rorug03G0057100 Rorug06G0361400
rosa_samantha	Rh1AG036400 Rh1BG220200 Rh1CG232500 Rh4CG071100 Rh5AG345600 Rh7BG394800 Rh7DG288900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	498
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	2 cut(s)	431, 444
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	95
AgsI	TTSAA	4 cut(s)	173, 220, 268, 338
AjnI	CCWGG	2 cut(s)	182, 432
AluBI	AGCT	3 cut(s)	8, 241, 399
AluI	AGCT	3 cut(s)	8, 241, 399
Alw26I	GTCTC	3 cut(s)	113, 198, 360
AlwI	GGATC	2 cut(s)	431, 444
ApeKI	GCWGC	5 cut(s)	45, 82, 85, 155, 241
ApoI	RAATTY	1 cut(s)	168
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
AspLEI	GCGC	1 cut(s)	318
AspS9I	GGNCC	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	325
BamHI	GGATCC	1 cut(s)	436
BbvI	GCAGC	5 cut(s)	57, 94, 97, 167, 228
BccI	CCATC	1 cut(s)	448
BciT130I	CCWGG	2 cut(s)	184, 434
BcoDI	GTCTC	3 cut(s)	113, 198, 360
BfmI	CTRYAG	3 cut(s)	43, 80, 138
BisI	GCNGC	5 cut(s)	46, 83, 86, 156, 242
BlsI	GCNGC	5 cut(s)	47, 84, 87, 157, 243
Bme1390I	CCNGG	2 cut(s)	184, 434
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	438
BmrFI	CCNGG	2 cut(s)	184, 434
BmsI	GCATC	2 cut(s)	22, 121
Bpu10I	CCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	2 cut(s)	12, 403
BsaI	GGTCTC	1 cut(s)	113
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	184, 434
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseMII	CTCAG	1 cut(s)	228
BseXI	GCAGC	5 cut(s)	57, 94, 97, 167, 228
BsgI	GTGCAG	1 cut(s)	227
BslFI	GGGAC	1 cut(s)	242
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	3 cut(s)	113, 198, 360
BsmFI	GGGAC	1 cut(s)	242
Bso31I	GGTCTC	1 cut(s)	113
Bsp143I	GATC	1 cut(s)	436
BspACI	CCGC	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	229
BspLI	GGNNCC	1 cut(s)	438
BspMAI	CTGCAG	2 cut(s)	47, 84
BspPI	GGATC	2 cut(s)	431, 444
BspTNI	GGTCTC	1 cut(s)	113
BssMI	GATC	1 cut(s)	436
Bst2UI	CCWGG	2 cut(s)	184, 434
Bst4CI	ACNGT	4 cut(s)	139, 332, 524, 541
BstAPI	GCANNNNNTGC	1 cut(s)	131
BstC8I	GCNNGC	1 cut(s)	43
BstDEI	CTNAG	1 cut(s)	237
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	1 cut(s)	439
BstMAI	GTCTC	3 cut(s)	113, 198, 360
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNI	CCWGG	2 cut(s)	184, 434
BstSCI	CCNGG	2 cut(s)	182, 432
BstSFI	CTRYAG	3 cut(s)	43, 80, 138
BstV1I	GCAGC	5 cut(s)	57, 94, 97, 167, 228
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	77, 246
Cac8I	GCNNGC	1 cut(s)	43
CfoI	GCGC	1 cut(s)	318
Cfr13I	GGNCC	1 cut(s)	325
CviAII	CATG	1 cut(s)	392
CviJI	RGCY	5 cut(s)	8, 41, 88, 241, 399
CviKI_1	RGCY	5 cut(s)	8, 41, 88, 241, 399
DdeI	CTNAG	1 cut(s)	237
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
DraI	TTTAAA	1 cut(s)	150
Eco31I	GGTCTC	1 cut(s)	113
Eco47I	GGWCC	1 cut(s)	325
Eco57I	CTGAAG	1 cut(s)	57
EcoRII	CCWGG	2 cut(s)	182, 432
FaeI	CATG	1 cut(s)	395
FaiI	YATR	9 cut(s)	50, 178, 389, 393, 426, 459, 461, 473, 536
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	5 cut(s)	46, 83, 86, 156, 242
Fsp4HI	GCNGC	5 cut(s)	46, 83, 86, 156, 242
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	5 cut(s)	46, 83, 86, 156, 242
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	395
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HindIII	AAGCTT	2 cut(s)	6, 397
HinfI	GANTC	3 cut(s)	191, 230, 281
HphI	GGTGA	1 cut(s)	225
Hpy166II	GTNNAC	1 cut(s)	499
Hpy188I	TCNGA	3 cut(s)	118, 280, 528
Hpy188III	TCNNGA	1 cut(s)	29
Hpy8I	GTNNAC	1 cut(s)	499
HpyCH4III	ACNGT	4 cut(s)	139, 332, 524, 541
HpyCH4V	TGCA	4 cut(s)	45, 82, 134, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	395
HspAI	GCGC	1 cut(s)	316
Kzo9I	GATC	1 cut(s)	436
LpnPI	CCDG	6 cut(s)	55, 169, 196, 249, 419, 446
Lsp1109I	GCAGC	5 cut(s)	57, 94, 97, 167, 228
LweI	GCATC	2 cut(s)	22, 121
MaeIII	GTNAC	2 cut(s)	104, 198
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	1 cut(s)	220
MflI	RGATCY	1 cut(s)	436
MluCI	AATT	4 cut(s)	109, 168, 263, 292
MlyI	GAGTC	2 cut(s)	200, 224
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	5 cut(s)	36, 49, 310, 373, 427
MseI	TTAA	2 cut(s)	92, 149
MspR9I	CCNGG	2 cut(s)	184, 434
MvaI	CCWGG	2 cut(s)	184, 434
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	1 cut(s)	395
NlaIV	GGNNCC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	281
PfoI	TCCNGGA	1 cut(s)	432
PkrI	GCNGC	5 cut(s)	47, 84, 87, 157, 243
PleI	GAGTC	2 cut(s)	199, 224
PpsI	GAGTC	2 cut(s)	199, 224
Psp6I	CCWGG	2 cut(s)	182, 432
PspGI	CCWGG	2 cut(s)	182, 432
PspN4I	GGNNCC	1 cut(s)	438
PspPI	GGNCC	1 cut(s)	325
PstI	CTGCAG	2 cut(s)	47, 84
PsuI	RGATCY	1 cut(s)	436
SaqAI	TTAA	2 cut(s)	92, 149
SatI	GCNGC	5 cut(s)	46, 83, 86, 156, 242
Sau3AI	GATC	1 cut(s)	436
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	2 cut(s)	200, 224
ScrFI	CCNGG	2 cut(s)	184, 434
SetI	ASST	9 cut(s)	10, 188, 238, 243, 258, 302, 401, 425, 466
SfaNI	GCATC	2 cut(s)	22, 121
SfcI	CTRYAG	3 cut(s)	43, 80, 138
SinI	GGWCC	1 cut(s)	325
SmlI	CTYRAG	2 cut(s)	27, 418
SmoI	CTYRAG	2 cut(s)	27, 418
Sse9I	AATT	4 cut(s)	109, 168, 263, 292
SsiI	CCGC	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	182, 432
TaaI	ACNGT	4 cut(s)	139, 332, 524, 541
TaqI	TCGA	1 cut(s)	258
TasI	AATT	4 cut(s)	109, 168, 263, 292
TfiI	GAWTC	1 cut(s)	281
Tru1I	TTAA	2 cut(s)	92, 149
Tru9I	TTAA	2 cut(s)	92, 149
TscAI	CASTG	2 cut(s)	84, 253
TseI	GCWGC	5 cut(s)	45, 82, 85, 155, 241
TspDTI	ATGAA	7 cut(s)	17, 102, 338, 376, 408, 441, 498
TspRI	CASTG	2 cut(s)	84, 253
VpaK11BI	GGWCC	1 cut(s)	325
XapI	RAATTY	1 cut(s)	168
XmiI	GTMKAC	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.