Rh1BG220200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0015732
Physical Location & Seq
Reverse (-)
33976526 .. 33990374
13849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG220200.1

Sequence Viewer

Length: 483 bp
ATGGAACTTGGTTTCTCCGATTCTTTAATTTTTCGTCTTCAAGTTTTGGCCATTTGCGGATTGATTAAAGCAAGTCTGAATAAGAGAAGAAGCTTCACAGAAGCATTGTTGCCTTCACTCAACCTCAGAAGTTCGGAGTATTTGCTGGTCAGCTCTTACTACGAGTGCAGCAATTGGATGTTCGCTGTGAAACAAAGACCACGATTTATATATAGCTGGAGAACATTGGATAATGAAGCTGAAGCCAAGGCAATGCAGACCTTAGAAGGTGAAGAATTGATTGTTCTTCAGCTTTTGATTACAGGGACCATATTTTTGATTTCTTTGTATCCCGATACCAAAGAAACTAAGCGAATCAGAAGATTGTCGACATCCATTCTTCTCAAGGTTGAAACACTGCAGATCTGCAAAACTCCAGACAACAAACTCACCATGAAAGACAATAAATTGGGGAACCAAAAAATAGATATTTTAATATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.49

Weight (kDa)

9.17

Isoelectric Point (pI)

48.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 368
AciI CCGC 1 cut(s) 57
AcoI YGGCCR 1 cut(s) 48
AcuI CTGAAG 2 cut(s) 261, 272
AgsI TTSAA 2 cut(s) 41, 392
AluBI AGCT 5 cut(s) 93, 153, 216, 239, 292
AluI AGCT 5 cut(s) 93, 153, 216, 239, 292
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 168
ArsI GACNNNNNNTTYG 2 cut(s) 298, 330
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 281, 421
AvaII GGWCC 1 cut(s) 306
BalI TGGCCA 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 29
BbvI GCAGC 1 cut(s) 180
BciVI GTATCC 1 cut(s) 339
BfmI CTRYAG 1 cut(s) 398
BfuI GTATCC 1 cut(s) 339
BglII AGATCT 1 cut(s) 402
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 306
BmgT120I GGNCC 1 cut(s) 306
BmiI GGNNCC 2 cut(s) 307, 455
BpiI GAAGAC 1 cut(s) 29
BpmI CTGGAG 2 cut(s) 238, 399
BpuEI CTTGAG 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 246
Bse3DI GCAATG 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 2 cut(s) 183, 371
BseMI GCAATG 1 cut(s) 258
BseMII CTCAG 1 cut(s) 139
BseXI GCAGC 1 cut(s) 180
BsgI GTGCAG 1 cut(s) 187
BshFI GGCC 1 cut(s) 50
BslFI GGGAC 1 cut(s) 319
BsmFI GGGAC 1 cut(s) 319
BsnI GGCC 1 cut(s) 50
Bsp143I GATC 1 cut(s) 402
BspACI CCGC 1 cut(s) 57
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 307, 455
BspMAI CTGCAG 1 cut(s) 402
BsrDI GCAATG 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 402
BssT1I CCWWGG 1 cut(s) 246
BstDEI CTNAG 3 cut(s) 125, 262, 348
BstF5I GGATG 2 cut(s) 183, 371
BstKTI GATC 1 cut(s) 405
BstMBI GATC 1 cut(s) 402
BstSFI CTRYAG 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 180
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
BsuI GTATCC 1 cut(s) 339
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 2 cut(s) 183, 371
BtsI GCAGTG 1 cut(s) 395
BtsIMutI CAGTG 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 306
CviAII CATG 1 cut(s) 433
CviJI RGCY 7 cut(s) 50, 93, 153, 216, 239, 245, 292
CviKI_1 RGCY 7 cut(s) 50, 93, 153, 216, 239, 245, 292
DdeI CTNAG 3 cut(s) 125, 262, 348
DpnI GATC 1 cut(s) 404
DpnII GATC 1 cut(s) 402
EaeI YGGCCR 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 306
Eco57I CTGAAG 2 cut(s) 261, 272
EcoT14I CCWWGG 1 cut(s) 246
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 1 cut(s) 436
FaiI YATR 5 cut(s) 209, 211, 213, 311, 434
FaqI GGGAC 1 cut(s) 319
FatI CATG 1 cut(s) 432
FblI GTMKAC 1 cut(s) 368
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 2 cut(s) 190, 358
Fsp4HI GCNGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 169
GsuI CTGGAG 2 cut(s) 238, 399
HaeIII GGCC 1 cut(s) 50
Hin1II CATG 1 cut(s) 436
HincII GTYRAC 1 cut(s) 369
HindII GTYRAC 1 cut(s) 369
HindIII AAGCTT 1 cut(s) 91
HinfI GANTC 2 cut(s) 20, 354
HphI GGTGA 2 cut(s) 281, 421
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 5 cut(s) 19, 78, 128, 136, 359
Hpy188III TCNNGA 2 cut(s) 332, 416
Hpy8I GTNNAC 1 cut(s) 369
HpyAV CCTTC 2 cut(s) 123, 260
HpyCH4V TGCA 4 cut(s) 168, 256, 400, 408
HpyF3I CTNAG 3 cut(s) 125, 262, 348
Hsp92II CATG 1 cut(s) 436
Kzo9I GATC 1 cut(s) 402
LpnPI CCDG 4 cut(s) 131, 202, 288, 429
Lsp1109I GCAGC 1 cut(s) 180
MalI GATC 1 cut(s) 404
MboI GATC 1 cut(s) 402
MboII GAAGA 6 cut(s) 29, 99, 278, 284, 371, 372
MfeI CAATTG 1 cut(s) 172
MflI RGATCY 1 cut(s) 402
MlsI TGGCCA 1 cut(s) 50
MluCI AATT 4 cut(s) 27, 172, 275, 446
MluNI TGGCCA 1 cut(s) 50
MnlI CCTC 1 cut(s) 134
Mox20I TGGCCA 1 cut(s) 50
MscI TGGCCA 1 cut(s) 50
MseI TTAA 4 cut(s) 26, 66, 473, 481
Msp20I TGGCCA 1 cut(s) 50
MunI CAATTG 1 cut(s) 172
NdeII GATC 1 cut(s) 402
NlaIII CATG 1 cut(s) 436
NlaIV GGNNCC 2 cut(s) 307, 455
PfeI GAWTC 2 cut(s) 20, 354
PkrI GCNGC 1 cut(s) 170
PspN4I GGNNCC 2 cut(s) 307, 455
PspPI GGNCC 1 cut(s) 306
PstI CTGCAG 1 cut(s) 402
PsuI RGATCY 1 cut(s) 402
SalI GTCGAC 1 cut(s) 367
SaqAI TTAA 4 cut(s) 26, 66, 473, 481
SatI GCNGC 1 cut(s) 169
Sau3AI GATC 1 cut(s) 402
Sau96I GGNCC 1 cut(s) 306
SetI ASST 9 cut(s) 95, 126, 155, 218, 241, 263, 271, 294, 390
SfcI CTRYAG 1 cut(s) 398
SinI GGWCC 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 383
SmoI CTYRAG 1 cut(s) 383
Sse9I AATT 4 cut(s) 27, 172, 275, 446
SsiI CCGC 1 cut(s) 57
SspI AATATT 1 cut(s) 477
StyI CCWWGG 1 cut(s) 246
TaqI TCGA 1 cut(s) 368
TasI AATT 4 cut(s) 27, 172, 275, 446
TfiI GAWTC 2 cut(s) 20, 354
Tru1I TTAA 4 cut(s) 26, 66, 473, 481
Tru9I TTAA 4 cut(s) 26, 66, 473, 481
TscAI CASTG 1 cut(s) 402
TseI GCWGC 1 cut(s) 168
TspDTI ATGAA 2 cut(s) 249, 449
TspRI CASTG 1 cut(s) 402
VpaK11BI GGWCC 1 cut(s) 306
XmiI GTMKAC 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.