Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0015732

Physical Location & Seq

Genomic Coordinates Reverse (-)

26258120 .. 26260211

Gene Structure 2092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00021380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGTAAGAGACTTGGAAAGGGAGGATTTCATACATGAAAGCTTTGGAAATGTTATCCCCTCAAGAATAGATGTCGAGGCCTGCAGCATAAGGGAGGAACTTGATAAATCGATGACACCGCAGCAGCCTTTAATTGGAAGTTGTAACAATTCATCGGAGACAGCAAAAGATGCAACGGTAGAGAATTTAAAAGCAGCACTCGTAGAAATTCAACTATGTTCCAGGTTGGAGTCTCTGTTCCTAAAGAAGAAATCCTTGAACAATGGGGACTCACTCGAGCTGCACACCGAAAAGCATATTGCGAGAGCCGTAACCGAGGTTGTGATTACCGATAGGATCTGGGCCACAACTCCTTTATTCAACCAACCAACCGAGCTTCTTGAACCCCAAAGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

132

Amino Acids

14.84

Weight (kDa)

4.86

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015732)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318791 RchiOBHm_Chr1g0356591 RchiOBHm_Chr1g0376421 RchiOBHm_Chr7g0185661
rosa_roxburghii	Rroxscaffold_1G00021380 Rroxscaffold_1G00025880
rosa_rugosa	Rorug01G0406000 Rorug03G0057100 Rorug06G0361400
rosa_samantha	Rh1AG036400 Rh1BG220200 Rh1CG232500 Rh4CG071100 Rh5AG345600 Rh7BG394800 Rh7DG288900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	1 cut(s)	344
AcsI	RAATTY	2 cut(s)	184, 207
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	4 cut(s)	212, 259, 361, 383
AjnI	CCWGG	1 cut(s)	221
AloI	GAACNNNNNNTCC	2 cut(s)	221, 253
AluBI	AGCT	3 cut(s)	42, 280, 376
AluI	AGCT	3 cut(s)	42, 280, 376
Alw26I	GTCTC	3 cut(s)	3, 152, 237
AlwI	GGATC	1 cut(s)	344
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	2 cut(s)	78, 342
ApeKI	GCWGC	5 cut(s)	84, 121, 124, 194, 280
ApoI	RAATTY	2 cut(s)	184, 207
AspS9I	GGNCC	1 cut(s)	342
AvaI	CYCGRG	1 cut(s)	275
BbvI	GCAGC	5 cut(s)	96, 133, 136, 206, 267
BceAI	ACGGC	1 cut(s)	293
BciT130I	CCWGG	1 cut(s)	223
BcoDI	GTCTC	3 cut(s)	3, 152, 237
BfmI	CTRYAG	1 cut(s)	82
BisI	GCNGC	5 cut(s)	85, 122, 125, 195, 281
BlsI	GCNGC	5 cut(s)	86, 123, 126, 196, 282
Bme1390I	CCNGG	1 cut(s)	223
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	1 cut(s)	342
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	1 cut(s)	160
BpuEI	CTTGAG	1 cut(s)	46
Bsa29I	ATCGAT	1 cut(s)	110
BsaJI	CCNNGG	1 cut(s)	315
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	223
BseCI	ATCGAT	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	315
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseXI	GCAGC	5 cut(s)	96, 133, 136, 206, 267
BsgI	GTGCAG	1 cut(s)	266
BshFI	GGCC	2 cut(s)	80, 344
BshVI	ATCGAT	1 cut(s)	110
BsiHKCI	CYCGRG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	3 cut(s)	3, 152, 237
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	2 cut(s)	80, 344
BsoBI	CYCGRG	1 cut(s)	275
Bsp143I	GATC	1 cut(s)	336
BspACI	CCGC	1 cut(s)	119
BspANI	GGCC	2 cut(s)	80, 344
BspDI	ATCGAT	1 cut(s)	110
BspMAI	CTGCAG	1 cut(s)	86
BspPI	GGATC	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	315
BssMI	GATC	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	223
Bst4CI	ACNGT	1 cut(s)	178
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	1 cut(s)	82
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	3 cut(s)	3, 152, 237
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	82
BstV1I	GCAGC	5 cut(s)	96, 133, 136, 206, 267
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
Bsu15I	ATCGAT	1 cut(s)	110
BsuRI	GGCC	2 cut(s)	80, 344
BsuTUI	ATCGAT	1 cut(s)	110
Cac8I	GCNNGC	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	342
ClaI	ATCGAT	1 cut(s)	110
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	7 cut(s)	42, 80, 127, 280, 308, 344, 376
CviKI_1	RGCY	7 cut(s)	42, 80, 127, 280, 308, 344, 376
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
DraI	TTTAAA	1 cut(s)	189
Eco147I	AGGCCT	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	221
FaeI	CATG	1 cut(s)	38
FaiI	YATR	5 cut(s)	32, 36, 89, 217, 297
FalI	AAGNNNNNCTT	2 cut(s)	239, 271
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	1 cut(s)	34
Fnu4HI	GCNGC	5 cut(s)	85, 122, 125, 195, 281
Fsp4HI	GCNGC	5 cut(s)	85, 122, 125, 195, 281
GluI	GCNGC	5 cut(s)	85, 122, 125, 195, 281
HaeIII	GGCC	2 cut(s)	80, 344
Hin1II	CATG	1 cut(s)	38
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	2 cut(s)	230, 269
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	2 cut(s)	63, 380
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4V	TGCA	3 cut(s)	84, 173, 283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	38
Kzo9I	GATC	1 cut(s)	336
LpnPI	CCDG	4 cut(s)	94, 208, 235, 325
Lsp1109I	GCAGC	5 cut(s)	96, 133, 136, 206, 267
LweI	GCATC	1 cut(s)	160
MaeIII	GTNAC	2 cut(s)	143, 310
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	1 cut(s)	259
MflI	RGATCY	1 cut(s)	336
MluCI	AATT	4 cut(s)	132, 148, 184, 207
MlyI	GAGTC	2 cut(s)	239, 263
MmeI	TCCRAC	1 cut(s)	207
MnlI	CCTC	5 cut(s)	16, 70, 70, 88, 310
MseI	TTAA	2 cut(s)	131, 188
MspR9I	CCNGG	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	223
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	1 cut(s)	38
PaeR7I	CTCGAG	1 cut(s)	275
PceI	AGGCCT	1 cut(s)	80
PkrI	GCNGC	5 cut(s)	86, 123, 126, 196, 282
PleI	GAGTC	2 cut(s)	238, 263
PpsI	GAGTC	2 cut(s)	238, 263
Psp6I	CCWGG	1 cut(s)	221
PspGI	CCWGG	1 cut(s)	221
PspPI	GGNCC	1 cut(s)	342
PspXI	VCTCGAGB	1 cut(s)	275
PstI	CTGCAG	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	336
SaqAI	TTAA	2 cut(s)	131, 188
SatI	GCNGC	5 cut(s)	85, 122, 125, 195, 281
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	1 cut(s)	342
SchI	GAGTC	2 cut(s)	239, 263
ScrFI	CCNGG	1 cut(s)	223
SetI	ASST	5 cut(s)	44, 227, 282, 321, 378
SfaNI	GCATC	1 cut(s)	160
SfcI	CTRYAG	1 cut(s)	82
Sfr274I	CTCGAG	1 cut(s)	275
SlaI	CTCGAG	1 cut(s)	275
SmlI	CTYRAG	2 cut(s)	61, 275
SmoI	CTYRAG	2 cut(s)	61, 275
Sse9I	AATT	4 cut(s)	132, 148, 184, 207
SseBI	AGGCCT	1 cut(s)	80
SsiI	CCGC	1 cut(s)	119
StuI	AGGCCT	1 cut(s)	80
StyD4I	CCNGG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	178
TaqI	TCGA	3 cut(s)	75, 110, 276
TasI	AATT	4 cut(s)	132, 148, 184, 207
Tru1I	TTAA	2 cut(s)	131, 188
Tru9I	TTAA	2 cut(s)	131, 188
TseI	GCWGC	5 cut(s)	84, 121, 124, 194, 280
TspDTI	ATGAA	3 cut(s)	19, 51, 141
XapI	RAATTY	2 cut(s)	184, 207
XhoI	CTCGAG	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.