Rorug03G0057100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0015732
Physical Location & Seq
Reverse (-)
4321204 .. 4321908
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0057100.1

Sequence Viewer

Length: 705 bp
ATGTTTGAAGTGTCGATTGGAACAGTGGTGCCTGATGAGCTGAATGTGGAGCCGGTGGTTGTTCCTTCGGCTGTGAAATTCGGAGACTATCAATGTAACAATGCCATGGACATATGGTCTAAGATTGAGGGAAAGGGAACTGCATTTGAGAATCCTAATTCTGTTGGACAGGCCATCATGGGAAATCTTCCTAAATCAGATATAATAGAGTCGTGCACGGTAGCAGGGCCTGGGCACTTTGTTCATGTTGTGTTGTCGAAGAGTTGGATGGCTAAGAGCTTACAAAAGATGCTTATTGATGGGATCGAAACATGGGCACCACAGCTCCAGATCAAACGGGCTGTTGTAGACTTTTCGTCACCTAATATTGCCAAGGAAATGCACGTTGGCCATCTCCGATCTACAATTATTGGGGACACGCTAGCCCGGATCCTTGAGTTTTCCAAAGTTGAAGTTGTTCGGCGTAATCATGTTGGTGACTGGGGAACACAGTTTGGCATGTTGATTCAATACCTTTTCGAAAAGTTTCCAAACGTGGATGATGTTAATGAAATGGAAATCGGTGCACTTCACGAATTTTATAAGCAATCAAAAAAGAGATTTGATGAGGATCCGGCCTTCAAGGAGAGAGCACAAGCTGCAGTGGTATCCCTTCAGGGTGGGACTCCCAAGTACCGTGAGGCATGGCTTAATTCAAATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

26.12

Weight (kDa)

5.71

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Arg_tRNA_synt_N PF03485 12 - 79 8.3e-12 Arginyl tRNA synthetase N terminal domain
tRNA-synt_1d PF00750 97 - 229 4.7e-48 tRNA synthetases class I (R), catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AccB1I GGYRCC 2 cut(s) 28, 316
AccI GTMKAC 1 cut(s) 348
AclWI GGATC 5 cut(s) 311, 424, 437, 605, 618
AcoI YGGCCR 1 cut(s) 388
AcsI RAATTY 2 cut(s) 77, 575
AcuI CTGAAG 1 cut(s) 638
AfaI GTAC 1 cut(s) 674
AgsI TTSAA 5 cut(s) 8, 452, 509, 622, 696
AhdI GACNNNNNGTC 2 cut(s) 115, 355
AjnI CCWGG 1 cut(s) 229
AjuI GAANNNNNNNTTGG 3 cut(s) 32, 369, 401
AluBI AGCT 4 cut(s) 40, 279, 325, 638
AluI AGCT 4 cut(s) 40, 279, 325, 638
Alw21I GWGCWC 3 cut(s) 218, 568, 634
Alw26I GTCTC 1 cut(s) 78
Alw44I GTGCAC 2 cut(s) 214, 564
AlwI GGATC 5 cut(s) 311, 424, 437, 605, 618
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 4 cut(s) 171, 227, 388, 615
ApaLI GTGCAC 2 cut(s) 214, 564
ApeKI GCWGC 1 cut(s) 638
ApoI RAATTY 2 cut(s) 77, 575
Asp700I GAANNNNTTC 2 cut(s) 456, 525
AspS9I GGNCC 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 427
AsuHPI GGTGA 2 cut(s) 351, 488
AsuII TTCGAA 1 cut(s) 519
AsuNHI GCTAGC 1 cut(s) 421
BaeGI GKGCMC 4 cut(s) 218, 237, 319, 568
BalI TGGCCA 1 cut(s) 390
BamHI GGATCC 2 cut(s) 429, 610
BanI GGYRCC 2 cut(s) 28, 316
Bbv12I GWGCWC 3 cut(s) 218, 568, 634
BbvI GCAGC 1 cut(s) 625
BccI CCATC 4 cut(s) 182, 262, 293, 399
BciT130I CCWGG 1 cut(s) 231
BciVI GTATCC 1 cut(s) 658
BcnI CCSGG 1 cut(s) 427
BcoDI GTCTC 1 cut(s) 78
BfaI CTAG 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 639
BfuI GTATCC 1 cut(s) 658
BisI GCNGC 1 cut(s) 639
BlsI GCNGC 1 cut(s) 640
Bme1390I CCNGG 2 cut(s) 231, 427
BmeRI GACNNNNNGTC 2 cut(s) 115, 355
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 5 cut(s) 30, 51, 318, 431, 612
BmrFI CCNGG 2 cut(s) 231, 427
BmrI ACTGGG 1 cut(s) 490
BmsI GCATC 1 cut(s) 279
BmtI GCTAGC 1 cut(s) 425
BmuI ACTGGG 1 cut(s) 490
BpmI CTGGAG 1 cut(s) 311
Bpu14I TTCGAA 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 427
BsaBI GATNNNNATC 1 cut(s) 609
BsaJI CCNNGG 3 cut(s) 105, 230, 372
BsaXI ACNNNNNCTCC 2 cut(s) 309, 339
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 485
Bse8I GATNNNNATC 1 cut(s) 609
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 3 cut(s) 105, 230, 372
BseGI GGATG 2 cut(s) 273, 544
BseJI GATNNNNATC 1 cut(s) 609
BseNI ACTGG 1 cut(s) 485
BseSI GKGCMC 4 cut(s) 218, 237, 319, 568
BseXI GCAGC 1 cut(s) 625
BshFI GGCC 4 cut(s) 173, 229, 390, 617
BshNI GGYRCC 2 cut(s) 28, 316
BsiHKAI GWGCWC 3 cut(s) 218, 568, 634
BsiSI CCGG 3 cut(s) 53, 427, 614
BslFI GGGAC 2 cut(s) 428, 676
BsmAI GTCTC 1 cut(s) 78
BsmFI GGGAC 2 cut(s) 428, 676
BsnI GGCC 4 cut(s) 173, 229, 390, 617
Bsp119I TTCGAA 1 cut(s) 519
Bsp1286I GDGCHC 5 cut(s) 218, 237, 319, 568, 634
Bsp143I GATC 5 cut(s) 303, 330, 398, 429, 610
Bsp19I CCATGG 1 cut(s) 105
BspANI GGCC 4 cut(s) 173, 229, 390, 617
BspLI GGNNCC 5 cut(s) 30, 51, 318, 431, 612
BspMAI CTGCAG 1 cut(s) 643
BspOI GCTAGC 1 cut(s) 425
BspPI GGATC 5 cut(s) 311, 424, 437, 605, 618
BspT104I TTCGAA 1 cut(s) 519
BspT107I GGYRCC 2 cut(s) 28, 316
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 1 cut(s) 485
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 3 cut(s) 105, 230, 372
BssMI GATC 5 cut(s) 303, 330, 398, 429, 610
BssT1I CCWWGG 2 cut(s) 105, 372
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 4 cut(s) 25, 220, 492, 677
Bst6I CTCTTC 1 cut(s) 254
BstAPI GCANNNNNTGC 1 cut(s) 638
BstBI TTCGAA 1 cut(s) 519
BstC8I GCNNGC 1 cut(s) 423
BstDEI CTNAG 2 cut(s) 120, 273
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 2 cut(s) 273, 544
BstKTI GATC 5 cut(s) 306, 333, 401, 432, 613
BstMAI GTCTC 1 cut(s) 78
BstMBI GATC 5 cut(s) 303, 330, 398, 429, 610
BstMWI GCNNNNNNNGC 2 cut(s) 37, 638
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 502
BstSCI CCNGG 2 cut(s) 229, 425
BstSFI CTRYAG 1 cut(s) 639
BstSLI GKGCMC 4 cut(s) 218, 237, 319, 568
BstV1I GCAGC 1 cut(s) 625
BstX2I RGATCY 2 cut(s) 429, 610
BstYI RGATCY 2 cut(s) 429, 610
BsuI GTATCC 1 cut(s) 658
BsuRI GGCC 4 cut(s) 173, 229, 390, 617
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 2 cut(s) 273, 544
BtsI GCAGTG 1 cut(s) 648
BtsIMutI CAGTG 2 cut(s) 30, 648
Cac8I GCNNGC 1 cut(s) 423
CaiI CAGNNNCTG 1 cut(s) 230
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 227
Csp6I GTAC 1 cut(s) 673
CviAII CATG 7 cut(s) 106, 178, 245, 312, 470, 499, 684
CviQI GTAC 1 cut(s) 673
DdeI CTNAG 2 cut(s) 120, 273
DpnI GATC 5 cut(s) 305, 332, 400, 431, 612
DpnII GATC 5 cut(s) 303, 330, 398, 429, 610
DriI GACNNNNNGTC 2 cut(s) 115, 355
EaeI YGGCCR 1 cut(s) 388
Eam1104I CTCTTC 1 cut(s) 254
Eam1105I GACNNNNNGTC 2 cut(s) 115, 355
EarI CTCTTC 1 cut(s) 254
Eco130I CCWWGG 2 cut(s) 105, 372
Eco57I CTGAAG 1 cut(s) 638
EcoO109I RGGNCCY 1 cut(s) 227
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 2 cut(s) 105, 372
ErhI CCWWGG 2 cut(s) 105, 372
FaeI CATG 7 cut(s) 109, 181, 248, 315, 473, 502, 687
FaqI GGGAC 2 cut(s) 428, 676
FatI CATG 7 cut(s) 105, 177, 244, 311, 469, 498, 683
FauNDI CATATG 1 cut(s) 113
FblI GTMKAC 1 cut(s) 348
Fnu4HI GCNGC 1 cut(s) 639
FokI GGATG 2 cut(s) 280, 551
Fsp4HI GCNGC 1 cut(s) 639
FspBI CTAG 1 cut(s) 422
GluI GCNGC 1 cut(s) 639
GsuI CTGGAG 1 cut(s) 311
HaeIII GGCC 4 cut(s) 173, 229, 390, 617
HapII CCGG 3 cut(s) 53, 427, 614
Hin1II CATG 7 cut(s) 109, 181, 248, 315, 473, 502, 687
HinfI GANTC 4 cut(s) 151, 209, 505, 664
HpaII CCGG 3 cut(s) 53, 427, 614
HphI GGTGA 2 cut(s) 351, 488
Hpy166II GTNNAC 3 cut(s) 216, 349, 566
Hpy188I TCNGA 3 cut(s) 83, 199, 398
Hpy188III TCNNGA 2 cut(s) 328, 572
Hpy8I GTNNAC 3 cut(s) 216, 349, 566
HpyAV CCTTC 3 cut(s) 75, 628, 662
HpyCH4III ACNGT 4 cut(s) 25, 220, 492, 677
HpyCH4IV ACGT 2 cut(s) 384, 534
HpyCH4V TGCA 5 cut(s) 143, 216, 382, 566, 641
HpyF10VI GCNNNNNNNGC 2 cut(s) 37, 638
HpyF3I CTNAG 2 cut(s) 120, 273
HpySE526I ACGT 2 cut(s) 384, 534
Hsp92II CATG 7 cut(s) 109, 181, 248, 315, 473, 502, 687
Kzo9I GATC 5 cut(s) 303, 330, 398, 429, 610
LmnI GCTCC 2 cut(s) 49, 330
Lsp1109I GCAGC 1 cut(s) 625
LweI GCATC 1 cut(s) 279
MaeI CTAG 1 cut(s) 422
MaeII ACGT 2 cut(s) 384, 534
MaeIII GTNAC 3 cut(s) 95, 357, 476
MalI GATC 5 cut(s) 305, 332, 400, 431, 612
MboI GATC 5 cut(s) 303, 330, 398, 429, 610
MboII GAAGA 2 cut(s) 179, 271
MflI RGATCY 2 cut(s) 429, 610
MhlI GDGCHC 5 cut(s) 218, 237, 319, 568, 634
MlsI TGGCCA 1 cut(s) 390
MluCI AATT 5 cut(s) 77, 157, 405, 575, 691
MluNI TGGCCA 1 cut(s) 390
MlyI GAGTC 2 cut(s) 218, 658
MmeI TCCRAC 2 cut(s) 145, 245
MnlI CCTC 3 cut(s) 121, 601, 673
Mox20I TGGCCA 1 cut(s) 390
MroXI GAANNNNTTC 2 cut(s) 456, 525
MscI TGGCCA 1 cut(s) 390
MseI TTAA 2 cut(s) 546, 690
MslI CAYNNNNRTG 1 cut(s) 474
Msp20I TGGCCA 1 cut(s) 390
MspI CCGG 3 cut(s) 53, 427, 614
MspR9I CCNGG 2 cut(s) 231, 427
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 37, 638
NciI CCSGG 1 cut(s) 427
NcoI CCATGG 1 cut(s) 105
NdeI CATATG 1 cut(s) 113
NdeII GATC 5 cut(s) 303, 330, 398, 429, 610
NheI GCTAGC 1 cut(s) 421
NlaIII CATG 7 cut(s) 109, 181, 248, 315, 473, 502, 687
NlaIV GGNNCC 5 cut(s) 30, 51, 318, 431, 612
NmuCI GTSAC 2 cut(s) 357, 476
NspI RCATGY 1 cut(s) 502
NspV TTCGAA 1 cut(s) 519
PdmI GAANNNNTTC 2 cut(s) 456, 525
PfeI GAWTC 2 cut(s) 151, 505
PkrI GCNGC 1 cut(s) 640
PleI GAGTC 2 cut(s) 217, 658
PpsI GAGTC 2 cut(s) 217, 658
PsiI TTATAA 1 cut(s) 582
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 5 cut(s) 30, 51, 318, 431, 612
PspPI GGNCC 1 cut(s) 227
PstI CTGCAG 1 cut(s) 643
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 2 cut(s) 429, 610
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
RseI CAYNNNNRTG 1 cut(s) 474
SaqAI TTAA 2 cut(s) 546, 690
SatI GCNGC 1 cut(s) 639
Sau3AI GATC 5 cut(s) 303, 330, 398, 429, 610
Sau96I GGNCC 1 cut(s) 227
SchI GAGTC 2 cut(s) 218, 658
ScrFI CCNGG 2 cut(s) 231, 427
SduI GDGCHC 5 cut(s) 218, 237, 319, 568, 634
SetI ASST 8 cut(s) 42, 281, 327, 364, 387, 516, 537, 640
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 639
SfuI TTCGAA 1 cut(s) 519
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 434
SmoI CTYRAG 1 cut(s) 434
Sse9I AATT 5 cut(s) 77, 157, 405, 575, 691
SspI AATATT 1 cut(s) 367
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 2 cut(s) 229, 425
StyI CCWWGG 2 cut(s) 105, 372
TaaI ACNGT 4 cut(s) 25, 220, 492, 677
TaiI ACGT 2 cut(s) 387, 537
TaqI TCGA 4 cut(s) 14, 257, 306, 519
TasI AATT 5 cut(s) 77, 157, 405, 575, 691
TfiI GAWTC 2 cut(s) 151, 505
Tru1I TTAA 2 cut(s) 546, 690
Tru9I TTAA 2 cut(s) 546, 690
TscAI CASTG 2 cut(s) 30, 648
TseFI GTSAC 2 cut(s) 357, 476
TseI GCWGC 1 cut(s) 638
Tsp45I GTSAC 2 cut(s) 357, 476
TspDTI ATGAA 2 cut(s) 233, 564
TspRI CASTG 2 cut(s) 30, 648
VneI GTGCAC 2 cut(s) 214, 564
XapI RAATTY 2 cut(s) 77, 575
XceI RCATGY 1 cut(s) 502
XmiI GTMKAC 1 cut(s) 348
XmnI GAANNNNTTC 2 cut(s) 456, 525
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.