Rh7BG394800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015732
Physical Location & Seq
Forward (+)
43693248 .. 43699041
5794 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG394800.1

Sequence Viewer

Length: 270 bp
ATGACACTGCAGCAGCCTTTAAGTGGAAGTTGTAACAATTCATCGGAGACCGCAAAAGATGCAACGGTAGAGCATTTAAAAGCAGCACTCGTAGAAATTCAACTATGTTCCAGGTTGGAGTCTCTGTTACTAAAGAAGAAATTCTTGAACAATGGGGACTCACCTGAGCTGCACACTGAAAAGGTCGAAAAATTGAAAGTATTATCAGAATCTCTTGCTAATTCCACCTCACAAGCAGAAAAGCGCATTTTGGACCACAGGGAATGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.96

Weight (kDa)

6.28

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AcsI RAATTY 2 cut(s) 96, 140
AfiI CCNNNNNNNGG 1 cut(s) 23
AgsI TTSAA 3 cut(s) 101, 148, 196
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw26I GTCTC 2 cut(s) 41, 126
ApeKI GCWGC 4 cut(s) 10, 13, 83, 169
ApoI RAATTY 2 cut(s) 96, 140
Asp700I GAANNNNTTC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 253
AsuHPI GGTGA 1 cut(s) 153
AvaII GGWCC 1 cut(s) 253
BbvI GCAGC 4 cut(s) 22, 25, 95, 156
BciT130I CCWGG 1 cut(s) 112
BcoDI GTCTC 2 cut(s) 41, 126
BfmI CTRYAG 1 cut(s) 8
BisI GCNGC 4 cut(s) 11, 14, 84, 170
BlsI GCNGC 4 cut(s) 12, 15, 85, 171
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 253
BmgT120I GGNCC 1 cut(s) 253
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 49
Bpu10I CCTNAGC 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 41
BsaXI ACNNNNNCTCC 2 cut(s) 110, 140
Bsc4I CCNNNNNNNGG 1 cut(s) 23
BseBI CCWGG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 156
BseXI GCAGC 4 cut(s) 22, 25, 95, 156
BsgI GTGCAG 1 cut(s) 155
BslFI GGGAC 1 cut(s) 170
BslI CCNNNNNNNGG 1 cut(s) 23
BsmAI GTCTC 2 cut(s) 41, 126
BsmFI GGGAC 1 cut(s) 170
Bso31I GGTCTC 1 cut(s) 41
BspACI CCGC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 157
BspMAI CTGCAG 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 67
BstAPI GCANNNNNTGC 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 165
BstHHI GCGC 1 cut(s) 246
BstMAI GTCTC 2 cut(s) 41, 126
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 1 cut(s) 112
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 1 cut(s) 8
BstV1I GCAGC 4 cut(s) 22, 25, 95, 156
BtsI GCAGTG 1 cut(s) 5
BtsIMutI CAGTG 2 cut(s) 5, 174
CfoI GCGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 253
CviJI RGCY 2 cut(s) 16, 169
CviKI_1 RGCY 2 cut(s) 16, 169
DdeI CTNAG 1 cut(s) 165
DraI TTTAAA 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 253
EcoRII CCWGG 1 cut(s) 110
FaiI YATR 1 cut(s) 106
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 1 cut(s) 170
Fnu4HI GCNGC 4 cut(s) 11, 14, 84, 170
Fsp4HI GCNGC 4 cut(s) 11, 14, 84, 170
GlaI GCGC 1 cut(s) 245
GluI GCNGC 4 cut(s) 11, 14, 84, 170
HhaI GCGC 1 cut(s) 246
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HinfI GANTC 3 cut(s) 119, 158, 209
HphI GGTGA 1 cut(s) 153
Hpy188I TCNGA 2 cut(s) 46, 208
Hpy188III TCNNGA 1 cut(s) 145
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 10, 62, 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
HpyF3I CTNAG 1 cut(s) 165
HspAI GCGC 1 cut(s) 244
LpnPI CCDG 4 cut(s) 97, 124, 177, 244
Lsp1109I GCAGC 4 cut(s) 22, 25, 95, 156
LweI GCATC 1 cut(s) 49
MaeIII GTNAC 2 cut(s) 32, 126
MboII GAAGA 1 cut(s) 148
MluCI AATT 5 cut(s) 37, 96, 140, 191, 220
MlyI GAGTC 2 cut(s) 128, 152
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 2 cut(s) 20, 77
MspR9I CCNGG 1 cut(s) 112
MvaI CCWGG 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 59
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 209
PkrI GCNGC 4 cut(s) 12, 15, 85, 171
PleI GAGTC 2 cut(s) 127, 152
PpsI GAGTC 2 cut(s) 127, 152
Psp6I CCWGG 1 cut(s) 110
PspGI CCWGG 1 cut(s) 110
PspPI GGNCC 1 cut(s) 253
PstI CTGCAG 1 cut(s) 12
SaqAI TTAA 2 cut(s) 20, 77
SatI GCNGC 4 cut(s) 11, 14, 84, 170
Sau96I GGNCC 1 cut(s) 253
SchI GAGTC 2 cut(s) 128, 152
ScrFI CCNGG 1 cut(s) 112
SetI ASST 5 cut(s) 116, 166, 171, 186, 230
SfaNI GCATC 1 cut(s) 49
SfcI CTRYAG 1 cut(s) 8
SgeI CNNG 7 cut(s) 101, 123, 124, 157, 176, 227, 245
SinI GGWCC 1 cut(s) 253
Sse9I AATT 5 cut(s) 37, 96, 140, 191, 220
SsiI CCGC 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 186
TasI AATT 5 cut(s) 37, 96, 140, 191, 220
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 2 cut(s) 20, 77
Tru9I TTAA 2 cut(s) 20, 77
TscAI CASTG 2 cut(s) 12, 181
TseI GCWGC 4 cut(s) 10, 13, 83, 169
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 2 cut(s) 12, 181
VpaK11BI GGWCC 1 cut(s) 253
XapI RAATTY 2 cut(s) 96, 140
XmnI GAANNNNTTC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.