Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0015732

Physical Location & Seq

Genomic Coordinates Forward (+)

13132357 .. 13142278

Gene Structure 9922 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG071100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGATAAACTATAAGGTTGGAGAAATATCTAGCGACATTTTAGTTTGTATGACTCAAGGCATTTGTTATACAATTATTATATATATTACTCTTTCGTATCATTTCAACATAAAGCGAGAAGAATTGCTCCAATTGGCTCAAAATGCAATTTCAGGGCTTAAACTAAATGCTGATCTTACAAGAATAGATGCTGAAGCCTGCAGCATAAGGGAGGAACTTGATAAACTGATGACACTGCAGCAGCCTTTAAGTGGAAGTTGTAACAATTCATCGAAGACAGCAAAAGATGCAACGGTAGAGAATTTAAAAGCAGCACTCGTAGAAATTCAACTATGTTCCAGGTTGAAGTCTCTGTTACTAAAGAAGAAATCCTTGAACAATGGGGACTCACCTGAGCTGCACACTGAAAAGGTCGAAAAATTGAAAGTATTATCAGAATCTCTTGCTAATTCCACCTCACAAGCAGAAAAGCGCATTTTGGACCACAGATTTCAAAAAGAAGAAGCACTTAACTTTCGTGTAGCTAAAGCTAATGAAGTAAGCCAACTTGAGAAGATTTTATCAACTTATTTCACTGCTACCAACATATGCTGTTGGACAACAGTTCACTGGAAGAGGAAGACAAACAACGATACGGTTGCAAATGAGGACCGAGTTTTAGCAACTGTGAGGGTTCAGCCATCTCATGTTCATGTGCTATCAAGGTTTTATCAATTAAAACTTTTAACTTACGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

27.75

Weight (kDa)

8.75

Isoelectric Point (pI)

38.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015732)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318791 RchiOBHm_Chr1g0356591 RchiOBHm_Chr1g0376421 RchiOBHm_Chr7g0185661
rosa_roxburghii	Rroxscaffold_1G00021380 Rroxscaffold_1G00025880
rosa_rugosa	Rorug01G0406000 Rorug03G0057100 Rorug06G0361400
rosa_samantha	Rh1AG036400 Rh1BG220200 Rh1CG232500 Rh4CG071100 Rh5AG345600 Rh7BG394800 Rh7DG288900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	301, 324
AcuI	CTGAAG	1 cut(s)	213
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	6 cut(s)	106, 329, 346, 376, 424, 494
AjnI	CCWGG	1 cut(s)	338
AluBI	AGCT	3 cut(s)	397, 524, 530
AluI	AGCT	3 cut(s)	397, 524, 530
Alw26I	GTCTC	1 cut(s)	354
ApeKI	GCWGC	5 cut(s)	201, 238, 241, 311, 397
ApoI	RAATTY	2 cut(s)	301, 324
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	2 cut(s)	481, 649
AsuHPI	GGTGA	1 cut(s)	381
AvaII	GGWCC	2 cut(s)	481, 649
BbsI	GAAGAC	2 cut(s)	281, 626
BbvI	GCAGC	5 cut(s)	213, 250, 253, 323, 384
BccI	CCATC	1 cut(s)	688
BcgI	CGANNNNNNTGC	2 cut(s)	620, 654
BciT130I	CCWGG	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	354
BfaI	CTAG	1 cut(s)	30
BfmI	CTRYAG	2 cut(s)	199, 236
BisI	GCNGC	5 cut(s)	202, 239, 242, 312, 398
BlsI	GCNGC	5 cut(s)	203, 240, 243, 313, 399
Bme1390I	CCNGG	1 cut(s)	340
Bme18I	GGWCC	2 cut(s)	481, 649
BmgT120I	GGNCC	2 cut(s)	481, 649
BmrFI	CCNGG	1 cut(s)	340
BmsI	GCATC	2 cut(s)	178, 277
BpiI	GAAGAC	2 cut(s)	281, 626
Bpu10I	CCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	2 cut(s)	39, 569
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	614
BseBI	CCWGG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	614
BseXI	GCAGC	5 cut(s)	213, 250, 253, 323, 384
BsgI	GTGCAG	1 cut(s)	383
BslFI	GGGAC	1 cut(s)	398
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	354
BsmFI	GGGAC	1 cut(s)	398
Bsp143I	GATC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	385
BspMAI	CTGCAG	2 cut(s)	203, 240
BsrI	ACTGG	1 cut(s)	614
BssMI	GATC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	4 cut(s)	295, 604, 637, 667
Bst6I	CTCTTC	1 cut(s)	608
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	199
BstDEI	CTNAG	1 cut(s)	393
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	1 cut(s)	175
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	1 cut(s)	172
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 287
BstNI	CCWGG	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	338
BstSFI	CTRYAG	2 cut(s)	199, 236
BstV1I	GCAGC	5 cut(s)	213, 250, 253, 323, 384
BstV2I	GAAGAC	2 cut(s)	281, 626
BtsI	GCAGTG	2 cut(s)	233, 573
BtsIMutI	CAGTG	4 cut(s)	233, 402, 573, 607
Cac8I	GCNNGC	1 cut(s)	199
CfoI	GCGC	1 cut(s)	474
Cfr13I	GGNCC	2 cut(s)	481, 649
CviAII	CATG	2 cut(s)	686, 692
CviJI	RGCY	9 cut(s)	137, 157, 197, 244, 397, 524, 530, 543, 679
CviKI_1	RGCY	9 cut(s)	137, 157, 197, 244, 397, 524, 530, 543, 679
DdeI	CTNAG	1 cut(s)	393
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
DraI	TTTAAA	1 cut(s)	306
Eam1104I	CTCTTC	1 cut(s)	608
EarI	CTCTTC	1 cut(s)	608
Eco47I	GGWCC	2 cut(s)	481, 649
Eco57I	CTGAAG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	338
FaeI	CATG	2 cut(s)	689, 695
FalI	AAGNNNNNCTT	4 cut(s)	356, 388, 492, 524
FaqI	GGGAC	1 cut(s)	398
FatI	CATG	2 cut(s)	685, 691
FauNDI	CATATG	1 cut(s)	587
Fnu4HI	GCNGC	5 cut(s)	202, 239, 242, 312, 398
Fsp4HI	GCNGC	5 cut(s)	202, 239, 242, 312, 398
FspBI	CTAG	1 cut(s)	30
GlaI	GCGC	1 cut(s)	473
GluI	GCNGC	5 cut(s)	202, 239, 242, 312, 398
HhaI	GCGC	1 cut(s)	474
Hin1II	CATG	2 cut(s)	689, 695
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HinfI	GANTC	3 cut(s)	52, 386, 437
HphI	GGTGA	1 cut(s)	381
Hpy166II	GTNNAC	1 cut(s)	607
Hpy188I	TCNGA	1 cut(s)	436
Hpy8I	GTNNAC	1 cut(s)	607
HpyCH4III	ACNGT	4 cut(s)	295, 604, 637, 667
HpyCH4V	TGCA	6 cut(s)	146, 201, 238, 290, 400, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 287
HpyF3I	CTNAG	1 cut(s)	393
Hsp92II	CATG	2 cut(s)	689, 695
HspAI	GCGC	1 cut(s)	472
Kzo9I	GATC	1 cut(s)	172
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	6 cut(s)	138, 211, 325, 352, 405, 595
Lsp1109I	GCAGC	5 cut(s)	213, 250, 253, 323, 384
LweI	GCATC	2 cut(s)	178, 277
MaeI	CTAG	1 cut(s)	30
MaeIII	GTNAC	2 cut(s)	260, 354
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	7 cut(s)	131, 286, 376, 512, 565, 625, 631
MfeI	CAATTG	1 cut(s)	131
MlyI	GAGTC	2 cut(s)	46, 380
MmeI	TCCRAC	1 cut(s)	575
MnlI	CCTC	5 cut(s)	205, 466, 609, 640, 663
MseI	TTAA	7 cut(s)	159, 248, 305, 510, 716, 725, 736
MslI	CAYNNNNRTG	1 cut(s)	690
MspR9I	CCNGG	1 cut(s)	340
MunI	CAATTG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	143, 287
NdeI	CATATG	1 cut(s)	587
NdeII	GATC	1 cut(s)	172
NlaIII	CATG	2 cut(s)	689, 695
PfeI	GAWTC	1 cut(s)	437
PkrI	GCNGC	5 cut(s)	203, 240, 243, 313, 399
PleI	GAGTC	2 cut(s)	46, 380
PpsI	GAGTC	2 cut(s)	46, 380
Psp6I	CCWGG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	338
PspPI	GGNCC	2 cut(s)	481, 649
PstI	CTGCAG	2 cut(s)	203, 240
RseI	CAYNNNNRTG	1 cut(s)	690
SaqAI	TTAA	7 cut(s)	159, 248, 305, 510, 716, 725, 736
SatI	GCNGC	5 cut(s)	202, 239, 242, 312, 398
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	2 cut(s)	481, 649
SchI	GAGTC	2 cut(s)	46, 380
ScrFI	CCNGG	1 cut(s)	340
SetI	ASST	9 cut(s)	18, 344, 394, 399, 414, 458, 526, 532, 707
SfaNI	GCATC	2 cut(s)	178, 277
SfcI	CTRYAG	2 cut(s)	199, 236
SinI	GGWCC	2 cut(s)	481, 649
SmiMI	CAYNNNNRTG	1 cut(s)	690
SmlI	CTYRAG	2 cut(s)	54, 548
SmoI	CTYRAG	2 cut(s)	54, 548
SspMI	CTAG	1 cut(s)	30
StyD4I	CCNGG	1 cut(s)	338
TaaI	ACNGT	4 cut(s)	295, 604, 637, 667
TaqI	TCGA	2 cut(s)	272, 414
TaqII	GACCGA	1 cut(s)	666
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	7 cut(s)	159, 248, 305, 510, 716, 725, 736
Tru9I	TTAA	7 cut(s)	159, 248, 305, 510, 716, 725, 736
TscAI	CASTG	4 cut(s)	240, 409, 580, 614
TseI	GCWGC	5 cut(s)	201, 238, 241, 311, 397
TspDTI	ATGAA	3 cut(s)	258, 549, 680
TspRI	CASTG	4 cut(s)	240, 409, 580, 614
VpaK11BI	GGWCC	2 cut(s)	481, 649
XapI	RAATTY	2 cut(s)	301, 324
XspI	CTAG	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.