Rh1CG232500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0015732
Physical Location & Seq
Reverse (-)
48904384 .. 48922889
18506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG232500.1

Sequence Viewer

Length: 513 bp
ATGAATCAAAAAGAGAGTTCGATGGTCTTGCCTCCTTCTCAGACCCGAAGCAAGGGCTTAAAAGTTTTAGATCAACAACCTCGTCAATTTCAGGTTTTGGCCATTTGTGGATTGATTAAAGCAAGTCTGAATAAGAGAAGAAGCTTCACAGAAGCATTGCTGCCTTCACTCAACCTCAGAAGTTCGGAAATAGATGCTGAAGCCTGCAGCATAAGGGAGGAACTTGATAAACTGATGACACTGCAGCAGCCTTTAAGTGGAAGTTGTAACAATTCATCGGAGACAGCAAAAGATGCAACGGTAGAGAATTTAAAAGCAGCACTCGTAGAAATTCAACTATGTTCTAGGTTGGAGTCTCTGTTACTAAAGAAGAAATCCTTGAACAATGGGGACTCACCTGAGCTGCACACTAAAAAGGTCGAAAAATTGAAAGTATTATCAGAATCTCTTGCTAATTCCACCTCACAAGCAGAAAAGCGCATTTTGGACCACAGGTTTGAAACGGCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.9

Weight (kDa)

8.91

Isoelectric Point (pI)

60.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 99
AcsI RAATTY 2 cut(s) 307, 330
AcuI CTGAAG 1 cut(s) 219
AfiI CCNNNNNNNGG 2 cut(s) 52, 257
AgsI TTSAA 4 cut(s) 335, 382, 430, 500
AluBI AGCT 2 cut(s) 144, 403
AluI AGCT 2 cut(s) 144, 403
Alw26I GTCTC 2 cut(s) 275, 360
AoxI GGCC 2 cut(s) 99, 504
ApeKI GCWGC 6 cut(s) 160, 207, 244, 247, 317, 403
ApoI RAATTY 2 cut(s) 307, 330
ArsI GACNNNNNNTTYG 2 cut(s) 479, 511
AspLEI GCGC 1 cut(s) 480
AspS9I GGNCC 1 cut(s) 487
AsuHPI GGTGA 1 cut(s) 387
AvaII GGWCC 1 cut(s) 487
BalI TGGCCA 1 cut(s) 101
BbvI GCAGC 6 cut(s) 147, 219, 256, 259, 329, 390
BccI CCATC 1 cut(s) 16
BcgI CGANNNNNNTGC 2 cut(s) 10, 44
BcoDI GTCTC 2 cut(s) 275, 360
BfaI CTAG 1 cut(s) 345
BfmI CTRYAG 2 cut(s) 205, 242
BisI GCNGC 6 cut(s) 161, 208, 245, 248, 318, 404
BlsI GCNGC 6 cut(s) 162, 209, 246, 249, 319, 405
Bme18I GGWCC 1 cut(s) 487
BmgT120I GGNCC 1 cut(s) 487
BmsI GCATC 2 cut(s) 184, 283
Bpu10I CCTNAGC 1 cut(s) 399
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 257
Bse3DI GCAATG 1 cut(s) 155
BseLI CCNNNNNNNGG 2 cut(s) 52, 257
BseMI GCAATG 1 cut(s) 155
BseMII CTCAG 3 cut(s) 53, 190, 390
BseXI GCAGC 6 cut(s) 147, 219, 256, 259, 329, 390
BsgI GTGCAG 1 cut(s) 389
BshFI GGCC 2 cut(s) 101, 506
BslFI GGGAC 1 cut(s) 404
BslI CCNNNNNNNGG 2 cut(s) 52, 257
BsmAI GTCTC 2 cut(s) 275, 360
BsmFI GGGAC 1 cut(s) 404
BsnI GGCC 2 cut(s) 101, 506
Bsp143I GATC 1 cut(s) 70
BspANI GGCC 2 cut(s) 101, 506
BspCNI CTCAG 3 cut(s) 52, 189, 391
BspMAI CTGCAG 2 cut(s) 209, 246
BsrDI GCAATG 1 cut(s) 155
BssMI GATC 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 301
BstAPI GCANNNNNTGC 1 cut(s) 293
BstC8I GCNNGC 1 cut(s) 205
BstDEI CTNAG 3 cut(s) 39, 176, 399
BstHHI GCGC 1 cut(s) 480
BstKTI GATC 1 cut(s) 73
BstMAI GTCTC 2 cut(s) 275, 360
BstMBI GATC 1 cut(s) 70
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstSFI CTRYAG 2 cut(s) 205, 242
BstV1I GCAGC 6 cut(s) 147, 219, 256, 259, 329, 390
BsuRI GGCC 2 cut(s) 101, 506
BtsI GCAGTG 1 cut(s) 239
BtsIMutI CAGTG 1 cut(s) 239
Cac8I GCNNGC 1 cut(s) 205
CfoI GCGC 1 cut(s) 480
Cfr13I GGNCC 1 cut(s) 487
CviJI RGCY 7 cut(s) 57, 101, 144, 203, 250, 403, 506
CviKI_1 RGCY 7 cut(s) 57, 101, 144, 203, 250, 403, 506
DdeI CTNAG 3 cut(s) 39, 176, 399
DpnI GATC 1 cut(s) 72
DpnII GATC 1 cut(s) 70
DraI TTTAAA 1 cut(s) 312
EaeI YGGCCR 1 cut(s) 99
Eco47I GGWCC 1 cut(s) 487
Eco57I CTGAAG 1 cut(s) 219
FaiI YATR 2 cut(s) 212, 340
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 1 cut(s) 404
Fnu4HI GCNGC 6 cut(s) 161, 208, 245, 248, 318, 404
Fsp4HI GCNGC 6 cut(s) 161, 208, 245, 248, 318, 404
FspBI CTAG 1 cut(s) 345
GlaI GCGC 1 cut(s) 479
GluI GCNGC 6 cut(s) 161, 208, 245, 248, 318, 404
HaeIII GGCC 2 cut(s) 101, 506
HhaI GCGC 1 cut(s) 480
Hin6I GCGC 1 cut(s) 478
HinP1I GCGC 1 cut(s) 478
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 4 cut(s) 4, 353, 392, 443
HphI GGTGA 1 cut(s) 387
Hpy188I TCNGA 6 cut(s) 42, 129, 179, 187, 280, 442
HpyAV CCTTC 2 cut(s) 45, 174
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4V TGCA 4 cut(s) 207, 244, 296, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 3 cut(s) 39, 176, 399
HspAI GCGC 1 cut(s) 478
Kzo9I GATC 1 cut(s) 70
LpnPI CCDG 4 cut(s) 77, 217, 411, 478
Lsp1109I GCAGC 6 cut(s) 147, 219, 256, 259, 329, 390
LweI GCATC 2 cut(s) 184, 283
MaeI CTAG 1 cut(s) 345
MaeIII GTNAC 2 cut(s) 266, 360
MalI GATC 1 cut(s) 72
MboI GATC 1 cut(s) 70
MboII GAAGA 2 cut(s) 150, 382
MlsI TGGCCA 1 cut(s) 101
MluCI AATT 6 cut(s) 86, 271, 307, 330, 425, 454
MluNI TGGCCA 1 cut(s) 101
MlyI GAGTC 2 cut(s) 362, 386
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 5 cut(s) 42, 90, 185, 211, 472
Mox20I TGGCCA 1 cut(s) 101
MscI TGGCCA 1 cut(s) 101
MseI TTAA 5 cut(s) 59, 117, 254, 311, 511
Msp20I TGGCCA 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 1 cut(s) 70
PfeI GAWTC 2 cut(s) 4, 443
PkrI GCNGC 6 cut(s) 162, 209, 246, 249, 319, 405
PleI GAGTC 2 cut(s) 361, 386
PpsI GAGTC 2 cut(s) 361, 386
PspPI GGNCC 1 cut(s) 487
PstI CTGCAG 2 cut(s) 209, 246
SaqAI TTAA 5 cut(s) 59, 117, 254, 311, 511
SatI GCNGC 6 cut(s) 161, 208, 245, 248, 318, 404
Sau3AI GATC 1 cut(s) 70
Sau96I GGNCC 1 cut(s) 487
SchI GAGTC 2 cut(s) 362, 386
SfaNI GCATC 2 cut(s) 184, 283
SfcI CTRYAG 2 cut(s) 205, 242
SinI GGWCC 1 cut(s) 487
Sse9I AATT 6 cut(s) 86, 271, 307, 330, 425, 454
SspMI CTAG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 301
TaqI TCGA 2 cut(s) 20, 420
TasI AATT 6 cut(s) 86, 271, 307, 330, 425, 454
TfiI GAWTC 2 cut(s) 4, 443
Tru1I TTAA 5 cut(s) 59, 117, 254, 311, 511
Tru9I TTAA 5 cut(s) 59, 117, 254, 311, 511
TscAI CASTG 1 cut(s) 246
TseI GCWGC 6 cut(s) 160, 207, 244, 247, 317, 403
TspDTI ATGAA 2 cut(s) 17, 264
TspRI CASTG 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 487
XapI RAATTY 2 cut(s) 307, 330
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.