Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015732

Physical Location & Seq

Genomic Coordinates Forward (+)

32307648 .. 32315173

Gene Structure 7526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG288900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTGGAGCAGCACCTTAGGGGTTACGACTCGGATAGGAAGGTTCTTCGGGTGCTGCCTAATGTAGTGCTGGTGAGGAAGCATACTGGGGTTGTGGTCGAATCGAGAGGGCGTTTTGTTCGGTCACTGGGTCCTGGGTTCCATTTCTCTCTTTGTGCAGGAGGGAGAAAATATGGAACAATAGATGCTGAAGCCTGCAGCATAAGGGAGGAACTTGATAAACTGATGACACTGCAGCAGCCTTTAAGTGGAAGTTGTAACAATTCATCGGAGACAGCAAAAGATGCAACGGTAGAGAATTTAAAAGCAGCACTCGTAGAAATTCAACTATGTTCCAGGTTGGAGTCTCTGTTACTAAAGAAGAAATCCTTGAACAATGGGGACTCACCTGAGCTGCACACTGAAAAGGTCGAAAAATTGAAAGTATTATCAGAATCTCTTGCTAATTCCACCTCACAAGCAGAAAAGCGCATTTTGGACCACAGGTTTGAAACGGCCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.57

Weight (kDa)

8.69

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015732)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0318791 RchiOBHm_Chr1g0356591 RchiOBHm_Chr1g0376421 RchiOBHm_Chr7g0185661
rosa_roxburghii	Rroxscaffold_1G00021380 Rroxscaffold_1G00025880
rosa_rugosa	Rorug01G0406000 Rorug03G0057100 Rorug06G0361400
rosa_samantha	Rh1AG036400 Rh1BG220200 Rh1CG232500 Rh4CG071100 Rh5AG345600 Rh7BG394800 Rh7DG288900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	298, 321
AcuI	CTGAAG	1 cut(s)	210
AfiI	CCNNNNNNNGG	1 cut(s)	248
AgsI	TTSAA	4 cut(s)	326, 373, 421, 491
AjnI	CCWGG	2 cut(s)	133, 335
AluBI	AGCT	1 cut(s)	394
AluI	AGCT	1 cut(s)	394
Alw26I	GTCTC	2 cut(s)	266, 351
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	7 cut(s)	10, 55, 198, 235, 238, 308, 394
ApoI	RAATTY	2 cut(s)	298, 321
ArsI	GACNNNNNNTTYG	2 cut(s)	470, 502
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	2 cut(s)	131, 478
AsuHPI	GGTGA	2 cut(s)	85, 378
AvaII	GGWCC	2 cut(s)	131, 478
AxyI	CCTNAGG	1 cut(s)	17
BbvI	GCAGC	7 cut(s)	22, 42, 210, 247, 250, 320, 381
BciT130I	CCWGG	2 cut(s)	135, 337
BcoDI	GTCTC	2 cut(s)	266, 351
BfmI	CTRYAG	2 cut(s)	196, 233
BisI	GCNGC	7 cut(s)	11, 56, 199, 236, 239, 309, 395
BlsI	GCNGC	7 cut(s)	12, 57, 200, 237, 240, 310, 396
Bme1390I	CCNGG	2 cut(s)	135, 337
Bme18I	GGWCC	2 cut(s)	131, 478
BmgT120I	GGNCC	2 cut(s)	131, 478
BmiI	GGNNCC	2 cut(s)	132, 140
BmrFI	CCNGG	2 cut(s)	135, 337
BmrI	ACTGGG	2 cut(s)	96, 137
BmsI	GCATC	2 cut(s)	175, 274
BmuI	ACTGGG	2 cut(s)	96, 137
Bpu10I	CCTNAGC	1 cut(s)	390
BsaJI	CCNNGG	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	335, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	91, 132
Bse21I	CCTNAGG	1 cut(s)	17
BseBI	CCWGG	2 cut(s)	135, 337
BseDI	CCNNGG	1 cut(s)	134
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	381
BseNI	ACTGG	2 cut(s)	91, 132
BseXI	GCAGC	7 cut(s)	22, 42, 210, 247, 250, 320, 381
BsgI	GTGCAG	2 cut(s)	177, 380
BshFI	GGCC	1 cut(s)	497
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	266, 351
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	497
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	1 cut(s)	382
BspLI	GGNNCC	2 cut(s)	132, 140
BspMAI	CTGCAG	2 cut(s)	200, 237
BsrI	ACTGG	2 cut(s)	91, 132
BssECI	CCNNGG	1 cut(s)	134
Bst2UI	CCWGG	2 cut(s)	135, 337
Bst4CI	ACNGT	1 cut(s)	292
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	17, 390
BstHHI	GCGC	1 cut(s)	471
BstMAI	GTCTC	2 cut(s)	266, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNI	CCWGG	2 cut(s)	135, 337
BstSCI	CCNGG	2 cut(s)	133, 335
BstSFI	CTRYAG	2 cut(s)	196, 233
BstV1I	GCAGC	7 cut(s)	22, 42, 210, 247, 250, 320, 381
Bsu36I	CCTNAGG	1 cut(s)	17
BsuRI	GGCC	1 cut(s)	497
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	3 cut(s)	125, 230, 399
Cac8I	GCNNGC	1 cut(s)	196
CfoI	GCGC	1 cut(s)	471
Cfr13I	GGNCC	2 cut(s)	131, 478
CviJI	RGCY	4 cut(s)	194, 241, 394, 497
CviKI_1	RGCY	4 cut(s)	194, 241, 394, 497
DdeI	CTNAG	2 cut(s)	17, 390
DraI	TTTAAA	1 cut(s)	303
Eco47I	GGWCC	2 cut(s)	131, 478
Eco57I	CTGAAG	1 cut(s)	210
Eco81I	CCTNAGG	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	133, 335
FaiI	YATR	4 cut(s)	84, 174, 203, 331
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FaqI	GGGAC	1 cut(s)	395
Fnu4HI	GCNGC	7 cut(s)	11, 56, 199, 236, 239, 309, 395
Fsp4HI	GCNGC	7 cut(s)	11, 56, 199, 236, 239, 309, 395
GlaI	GCGC	1 cut(s)	470
GluI	GCNGC	7 cut(s)	11, 56, 199, 236, 239, 309, 395
HaeIII	GGCC	1 cut(s)	497
HhaI	GCGC	1 cut(s)	471
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HinfI	GANTC	5 cut(s)	29, 101, 344, 383, 434
HphI	GGTGA	2 cut(s)	85, 378
Hpy188I	TCNGA	3 cut(s)	34, 271, 433
Hpy188III	TCNNGA	1 cut(s)	105
HpyAV	CCTTC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	292
HpyCH4V	TGCA	5 cut(s)	158, 198, 235, 287, 397
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	2 cut(s)	17, 390
HspAI	GCGC	1 cut(s)	469
LmnI	GCTCC	1 cut(s)	7
Lsp1109I	GCAGC	7 cut(s)	22, 42, 210, 247, 250, 320, 381
LweI	GCATC	2 cut(s)	175, 274
MaeIII	GTNAC	4 cut(s)	23, 123, 257, 351
MboII	GAAGA	2 cut(s)	38, 373
MluCI	AATT	5 cut(s)	262, 298, 321, 416, 445
MlyI	GAGTC	3 cut(s)	23, 353, 377
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	5 cut(s)	69, 101, 155, 202, 463
MseI	TTAA	3 cut(s)	245, 302, 502
MspR9I	CCNGG	2 cut(s)	135, 337
MvaI	CCWGG	2 cut(s)	135, 337
MwoI	GCNNNNNNNGC	1 cut(s)	284
NlaIV	GGNNCC	2 cut(s)	132, 140
NmuCI	GTSAC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	101, 434
PkrI	GCNGC	7 cut(s)	12, 57, 200, 237, 240, 310, 396
PleI	GAGTC	3 cut(s)	23, 352, 377
PpsI	GAGTC	3 cut(s)	23, 352, 377
PpuMI	RGGWCCY	1 cut(s)	131
Psp5II	RGGWCCY	1 cut(s)	131
Psp6I	CCWGG	2 cut(s)	133, 335
PspGI	CCWGG	2 cut(s)	133, 335
PspN4I	GGNNCC	2 cut(s)	132, 140
PspPI	GGNCC	2 cut(s)	131, 478
PspPPI	RGGWCCY	1 cut(s)	131
PstI	CTGCAG	2 cut(s)	200, 237
SaqAI	TTAA	3 cut(s)	245, 302, 502
SatI	GCNGC	7 cut(s)	11, 56, 199, 236, 239, 309, 395
Sau96I	GGNCC	2 cut(s)	131, 478
SchI	GAGTC	3 cut(s)	23, 353, 377
ScrFI	CCNGG	2 cut(s)	135, 337
SetI	ASST	8 cut(s)	18, 45, 341, 391, 396, 411, 455, 488
SfaNI	GCATC	2 cut(s)	175, 274
SfcI	CTRYAG	2 cut(s)	196, 233
SinI	GGWCC	2 cut(s)	131, 478
Sse9I	AATT	5 cut(s)	262, 298, 321, 416, 445
StyD4I	CCNGG	2 cut(s)	133, 335
TaaI	ACNGT	1 cut(s)	292
TaqI	TCGA	3 cut(s)	99, 104, 411
TaqII	GACCGA	1 cut(s)	111
TasI	AATT	5 cut(s)	262, 298, 321, 416, 445
TfiI	GAWTC	2 cut(s)	101, 434
Tru1I	TTAA	3 cut(s)	245, 302, 502
Tru9I	TTAA	3 cut(s)	245, 302, 502
TscAI	CASTG	3 cut(s)	132, 237, 406
TseFI	GTSAC	1 cut(s)	123
TseI	GCWGC	7 cut(s)	10, 55, 198, 235, 238, 308, 394
Tsp45I	GTSAC	1 cut(s)	123
TspDTI	ATGAA	1 cut(s)	255
TspRI	CASTG	3 cut(s)	132, 237, 406
VpaK11BI	GGWCC	2 cut(s)	131, 478
XapI	RAATTY	2 cut(s)	298, 321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.