Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008506

Physical Location & Seq

Genomic Coordinates Reverse (-)

9503378 .. 9510713

Gene Structure 7336 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17008

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2685 bp

ATGCATTTAGGGGTTTTGGGGGGTTTATCTTTCTACCACTCCATATACTCACCTCCCTTGCCCACTCAAATGGCCGCCGTCGGAGCTCTCTCGCCGTTCCCCTACAGCCTCCTCTGGCGGCCCAAGTCTTCAAACCGCACCGTTTCGTGCTCCGTCGGCTCTTCTACTGCTCCTCCTACAGGCACGCGCGGGTCTAATTATAAAAGATCAGGAAGAGTGGAGGGGCCTCGGAAAAGTATGGAAGACTCTGTTCAGAGAAAGATGGAGCAGTTTTATGAAGGGAGAGATGGTCCACCACTGCGTGTTTTGCCAATCGGTGGACTGGGAGAAATTGGGATGAATTGCATGCTGGTTGGGAATTATGATCGATATATACTGATTGATGCCGGTATCATGTTTCCAGACTTTGATGAACTTGGAGTCCAAAAGATAATACCTGATACCACATTTATCAGAAAATGGAAACACAAAATTGAAGCAATTGTCATTACACATGGCCATGAAGATCACATTGGTGCGTTGCCTTGGGTGATCCCAGCTTTGGATCCCAGTACACCAATATTTGCATCATCCTTCACCATGGAGCTTATTAGGAAACGTCTGAAGGAAAATGGGATTTTTGTTCCATCCAGACTCAAGATGTTCAGAACAAAGAGGAAATTTATGGCCGGGCCATTTGAAATTGAGCCTATCCGAGTGACGCATTCTATTCCCGACTGTTGTGGATTAGTTCTTCGCTGTGCTGATGGTACAATTCTTCATACCGGGGACTGGAAGATTGACGAGTCACCACTGGACGGTCAAGGTTTTGATCGTGAAGGTTTGGAAGAACTTTCAAAAGAAGGAGTAACATTGATGATGAGTGACTCTACAAATGTTCTCTCACCTGGAAGGACAACAAGTGAATCTTCTGTGGCAGATGCACTGATGAGGCATATTTCAGCAGCTCAAGGGAGGGTTATTACCACCCAGTTTGCATCAAACATACATCGACTTGGAAGTGTGAAAGCTGCTGCTGATGCTACTGGTAGAAAGTTGGTATTTGTTGGTATGTCCTTAAGGACATATCTTGATGCAGCTTGGAGGGATGGGAAGGCACCAATTGATCCATCAACCCTGGTGAAAGTGGAAGATATTGATTCCTATGCTCCAAAGGATTTGCTAATCGTCACAACTGGCTCTCAAGCAGAACCACGTGCAGCTCTAAATCTTGCATCATTTGGAAGTAGTCATTCTGTCAAACTGACCAAGGAAGATATAATTTTATATTCTGCTAAGGTTATTCCTGGTAATGAATCTCGGGTAATGAAAATGTTAAACCGCATATCAGATATGGGATCAACGATAGTGATGGGTAAGAACGAGGGGCTGCACACTTCTGGTCATGGGTACCGTGGAGAACTGGAGGAAGTGCTTAGAATTGTGAAGCCACAGCACTTTCTGCCCATACATGGAGAACTCTTGTTTCTCAAAGAGCATGAATTGCTTGGGAGATCAACTGGCATCCATCACACCACTGTAATAAAGAATGGGGAAATGCTTGGGGTTTCTCATTTGAGAAACAGAAGGGTACTTTCAAATGGTTTCACCTTGCTTGGAAAGGAGAATTTGCAGTTGAAATATAGTGATGGTGATAAAGCATTTGGTACATCAAGCGACCTTTGTGTTGATGAGAGACTAAAAATTGCCTTAGATGGCATAATAGTGATCAGCATGGAAATTTTACGGCCCCAAAATGTAAATGGTCTGGCTGAAAGTAGCATAAAAGGAAAGATAAGAATTACCACCCGATGTTTGTGGCTTGACAAAGGAAAGCTATATGATGCGCTCTATAAAGCTGCCCATGCTGCACTGTCAAGCTGCCCTATTAATTGTCCTTTACCTCACATGGAAAGAACAGTGTCTGAGGTATTGAGGAAATTGGTAAGAAAATACAGTGGTAAAAGGCCAGAAGTTATTGCTATTGCCATGGAGAATCCCACAGCAGTTCTTGCCGATGAGGTCAGTACAAGACTATCTGGAAAGTCCCATGTTGGTTACGAGAGGTCAGCTTTACGAAAAGTAATTGATGGAAATTCAAATAAGAGTCGACCAACTAGGACAGAAGCAAATGCAGCCAAGGACAATACACATCTGCAGAGCACCACTTCAGAGCAAGATTTTGAAGATGATGGTGGTGAAGTCAAAGCACCACTACCTGTGGAAGTTTCCACAGTCAATCCCGAAAAGCTTTCTTCTGATACAAAGGAGCCAGATGATTTCTGGAATGCAATGGTCAAGTTATCAGCTGGTGACAAATTAGCAGAAGATAAAGATGGTTTGGTTCTGCAAGAGGAACATGTAAAGAAAGATGACTCTGAAAGCACTGAGACACCAAATCCTTCAAAGCCGGTGAAACGGAACAAATGGAAGCCCGAGGAGGTTAAAAAGTTTATTGAAATGCGTGGGAAACAGCATAGCAGATTTCAAGTTGTGAAGGGGAGAATGGCGCTATGGGAAGAAATATCTAGAAACTTGTTGGCTGAGGGGATCAATCGAAGCCCCGGGCAATGCAAATCTTTGTGGTCATCTTTGGTTCAGAAATACGAGGAAAGCAAGAGTGGAAAGAGAAGCCGAAAGAGTTGGCCATATTATGAGGAAATGGATGGAGCTTTGTCTGATTCAGAGGCAATGGCAACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008409 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009914 GO:0009942 GO:0009987 GO:0010154 GO:0010817 GO:0016043 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B Lactamase_B_2 Myb_DNA-bind_4 RMMBL

Protein Analysis

894

Amino Acids

98.95

Weight (kDa)

8.81

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	114 - 257	6.5e-08	Metallo-beta-lactamase superfamily
Lactamase_B_2	PF12706	123 - 259	3.2e-09	Beta-lactamase superfamily domain
RNase_J_b_CASP	PF22505	317 - 442	1.4e-29	Ribonuclease J, beta-CASP domain
RMMBL	PF07521	457 - 503	1.1e-06	Zn-dependent metallo-hydrolase RNA specificity domain
Myb_DNA-bind_4	PF13837	800 - 882	3.1e-22	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63420
fragaria_vesca	FvH4_5g07980 FvH4_5g07980 FvH4_5g07980 FvH4_5g07980
malus_domestica	MD06G1143600.v1.1 MD14G1158900.v1.1
prunus_persica	Prupe.5G152800_v2.0.a1 Prupe.5G152800_v2.0.a1 Prupe.5G152800_v2.0.a1
pyrus_communis	pycom06g13330 pycom14g13250
rosa_chinensis	RchiOBHm_Chr7g0190431
rosa_laevigata	RLG00000004533
rosa_multiflora	Rmu_ssc0000036.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264630
rosa_rugosa	Rorug06G0504700 Rorug06G0504700
rosa_samantha	Rh7AG110500 Rh7BG113100 Rh7CG115300
rosa_wichuraiana	Rw0G019850 Rw7G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
Acc65I	GGTACC	1 cut(s)	1389
AccB1I	GGYRCC	2 cut(s)	1096, 1389
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	2089
AccII	CGCG	2 cut(s)	187, 189
AciI	CCGC	5 cut(s)	75, 118, 136, 189, 1321
AclWI	GGATC	6 cut(s)	526, 539, 552, 1100, 1345, 2537
AcoI	YGGCCR	4 cut(s)	72, 496, 666, 2624
AcsI	RAATTY	4 cut(s)	659, 1606, 1719, 2074
AcuI	CTGAAG	2 cut(s)	623, 2133
AcvI	CACGTG	1 cut(s)	1196
AdeI	CACNNNGTG	1 cut(s)	302
AfaI	GTAC	6 cut(s)	553, 751, 1391, 1572, 1648, 2008
AfiI	CCNNNNNNNGG	6 cut(s)	179, 317, 541, 771, 797, 1451
AflII	CTTAAG	1 cut(s)	1057
AflIII	ACRYGT	1 cut(s)	2338
AjnI	CCWGG	3 cut(s)	886, 1116, 1285
AjuI	GAANNNNNNNTTGG	2 cut(s)	495, 527
AleI	CACNNNNGTG	1 cut(s)	513
AloI	GAACNNNNNNTCC	2 cut(s)	405, 437
Alw21I	GWGCWC	3 cut(s)	88, 152, 2144
Alw26I	GTCTC	2 cut(s)	1669, 2363
AlwI	GGATC	6 cut(s)	526, 539, 552, 1100, 1345, 2537
AlwNI	CAGNNNCTG	1 cut(s)	1904
Ama87I	CYCGRG	3 cut(s)	1299, 2414, 2543
AoxI	GGCC	9 cut(s)	72, 119, 224, 496, 666, 671, 1727, 1946, 2624
ApoI	RAATTY	4 cut(s)	659, 1606, 1719, 2074
AseI	ATTAAT	1 cut(s)	1869
Asp718I	GGTACC	1 cut(s)	1389
AspLEI	GCGC	3 cut(s)	189, 1828, 2491
AspS9I	GGNCC	5 cut(s)	120, 224, 290, 671, 1728
AsuC2I	CCSGG	4 cut(s)	670, 766, 2544, 2545
AvaI	CYCGRG	3 cut(s)	1299, 2414, 2543
AvaII	GGWCC	1 cut(s)	290
BalI	TGGCCA	2 cut(s)	498, 2626
BamHI	GGATCC	1 cut(s)	544
BanI	GGYRCC	2 cut(s)	1096, 1389
BanII	GRGCYC	1 cut(s)	88
BbrPI	CACGTG	1 cut(s)	1196
BbsI	GAAGAC	2 cut(s)	120, 249
Bbv12I	GWGCWC	3 cut(s)	88, 152, 2144
BbvCI	CCTCAGC	1 cut(s)	2523
BceAI	ACGGC	3 cut(s)	62, 79, 1742
BciT130I	CCWGG	3 cut(s)	888, 1118, 1287
BclI	TGATCA	1 cut(s)	1707
BcnI	CCSGG	4 cut(s)	670, 766, 2544, 2545
BcoDI	GTCTC	2 cut(s)	1669, 2363
BfaI	CTAG	2 cut(s)	2097, 2508
BfmI	CTRYAG	3 cut(s)	103, 177, 2135
BfoI	RGCGCY	1 cut(s)	2492
BfrI	CTTAAG	1 cut(s)	1057
Bme1390I	CCNGG	7 cut(s)	670, 766, 888, 1118, 1287, 2544, 2545
Bme18I	GGWCC	1 cut(s)	290
BmeT110I	CYCGRG	3 cut(s)	1299, 2414, 2543
BmgT120I	GGNCC	5 cut(s)	120, 224, 290, 671, 1728
BmiI	GGNNCC	6 cut(s)	225, 546, 1098, 1391, 1730, 2250
BmrFI	CCNGG	7 cut(s)	670, 766, 888, 1118, 1287, 2544, 2545
BmrI	ACTGGG	3 cut(s)	332, 543, 964
BmsI	GCATC	9 cut(s)	373, 575, 910, 986, 1009, 1063, 1223, 1512, 1813
BmuI	ACTGGG	3 cut(s)	332, 543, 964
BpiI	GAAGAC	2 cut(s)	120, 249
BpmI	CTGGAG	1 cut(s)	1424
Bpu10I	CCTNAGC	2 cut(s)	1275, 2523
BpuEI	CTTGAG	3 cut(s)	620, 933, 1167
BpuMI	CCSGG	4 cut(s)	670, 766, 2544, 2545
Bsa29I	ATCGAT	1 cut(s)	367
BsaAI	YACGTR	1 cut(s)	1196
BsaXI	ACNNNNNCTCC	4 cut(s)	157, 187, 274, 304
Bsc4I	CCNNNNNNNGG	6 cut(s)	179, 317, 541, 771, 797, 1451
Bse118I	RCCGGY	2 cut(s)	386, 2389
Bse1I	ACTGG	9 cut(s)	327, 549, 776, 798, 970, 1030, 1180, 1407, 1504
Bse3DI	GCAATG	3 cut(s)	2277, 2555, 2676
BseBI	CCWGG	3 cut(s)	888, 1118, 1287
BseCI	ATCGAT	1 cut(s)	367
BseGI	GGATG	6 cut(s)	342, 569, 626, 1093, 1503, 2650
BseLI	CCNNNNNNNGG	6 cut(s)	179, 317, 541, 771, 797, 1451
BseMI	GCAATG	3 cut(s)	2277, 2555, 2676
BseMII	CTCAG	3 cut(s)	1896, 2358, 2514
BseNI	ACTGG	9 cut(s)	327, 549, 776, 798, 970, 1030, 1180, 1407, 1504
BseRI	GAGGAG	3 cut(s)	101, 162, 2432
BseYI	CCCAGC	1 cut(s)	535
BsgI	GTGCAG	3 cut(s)	1218, 1355, 1833
Bsh1236I	CGCG	2 cut(s)	187, 189
BshFI	GGCC	9 cut(s)	74, 121, 226, 498, 668, 673, 1729, 1948, 2626
BshNI	GGYRCC	2 cut(s)	1096, 1389
BshVI	ATCGAT	1 cut(s)	367
BsiHKAI	GWGCWC	3 cut(s)	88, 152, 2144
BsiHKCI	CYCGRG	3 cut(s)	1299, 2414, 2543
BsiSI	CCGG	5 cut(s)	387, 669, 765, 2390, 2544
BslFI	GGGAC	2 cut(s)	782, 2011
BslI	CCNNNNNNNGG	6 cut(s)	179, 317, 541, 771, 797, 1451
BsmAI	GTCTC	2 cut(s)	1669, 2363
BsmFI	GGGAC	2 cut(s)	782, 2011
BsmI	GAATGC	2 cut(s)	703, 2272
BsnI	GGCC	9 cut(s)	74, 121, 226, 498, 668, 673, 1729, 1948, 2626
BsoBI	CYCGRG	3 cut(s)	1299, 2414, 2543
Bsp1286I	GDGCHC	3 cut(s)	88, 152, 2144
Bsp19I	CCATGG	2 cut(s)	579, 1968
BspACI	CCGC	5 cut(s)	75, 118, 136, 189, 1321
BspANI	GGCC	9 cut(s)	74, 121, 226, 498, 668, 673, 1729, 1948, 2626
BspCNI	CTCAG	3 cut(s)	1897, 2359, 2515
BspDI	ATCGAT	1 cut(s)	367
BspFNI	CGCG	2 cut(s)	187, 189
BspLI	GGNNCC	6 cut(s)	225, 546, 1098, 1391, 1730, 2250
BspMAI	CTGCAG	1 cut(s)	2139
BspPI	GGATC	6 cut(s)	526, 539, 552, 1100, 1345, 2537
BspQI	GCTCTTC	1 cut(s)	166
BspT107I	GGYRCC	2 cut(s)	1096, 1389
BspTI	CTTAAG	1 cut(s)	1057
BsrDI	GCAATG	3 cut(s)	2277, 2555, 2676
BsrFI	RCCGGY	2 cut(s)	386, 2389
BsrI	ACTGG	9 cut(s)	327, 549, 776, 798, 970, 1030, 1180, 1407, 1504
BssAI	RCCGGY	2 cut(s)	386, 2389
BssT1I	CCWWGG	5 cut(s)	524, 579, 1248, 1968, 2118
Bst2UI	CCWGG	3 cut(s)	888, 1118, 1287
Bst4CI	ACNGT	9 cut(s)	142, 719, 800, 1394, 1519, 1854, 1900, 1937, 2215
Bst6I	CTCTTC	2 cut(s)	166, 208
BstAFI	CTTAAG	1 cut(s)	1057
BstAPI	GCANNNNNTGC	3 cut(s)	1441, 1483, 1991
BstBAI	YACGTR	1 cut(s)	1196
BstC8I	GCNNGC	2 cut(s)	185, 347
BstDEI	CTNAG	6 cut(s)	1275, 1415, 1690, 1905, 2367, 2523
BstDSI	CCRYGG	3 cut(s)	579, 1393, 1968
BstENI	CCTNNNNNAGG	1 cut(s)	177
BstF5I	GGATG	6 cut(s)	342, 569, 626, 1093, 1503, 2650
BstFNI	CGCG	2 cut(s)	187, 189
BstH2I	RGCGCY	1 cut(s)	2492
BstHHI	GCGC	3 cut(s)	189, 1828, 2491
BstMAI	GTCTC	2 cut(s)	1669, 2363
BstNI	CCWGG	3 cut(s)	888, 1118, 1287
BstNSI	RCATGY	2 cut(s)	349, 2342
BstSCI	CCNGG	7 cut(s)	668, 764, 886, 1116, 1285, 2542, 2543
BstSFI	CTRYAG	3 cut(s)	103, 177, 2135
BstUI	CGCG	2 cut(s)	187, 189
BstV2I	GAAGAC	2 cut(s)	120, 249
BstX2I	RGATCY	1 cut(s)	544
BstXI	CCANNNNNNTGG	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	544
Bsu15I	ATCGAT	1 cut(s)	367
BsuRI	GGCC	9 cut(s)	74, 121, 226, 498, 668, 673, 1729, 1948, 2626
BsuTUI	ATCGAT	1 cut(s)	367
BtgI	CCRYGG	3 cut(s)	579, 1393, 1968
BtsCI	GGATG	6 cut(s)	342, 569, 626, 1093, 1503, 2650
BtsI	GCAGTG	1 cut(s)	296
BtsIMutI	CAGTG	8 cut(s)	296, 791, 923, 1515, 1850, 1905, 1942, 2364
Cac8I	GCNNGC	2 cut(s)	185, 347
CaiI	CAGNNNCTG	1 cut(s)	1904
CfoI	GCGC	3 cut(s)	189, 1828, 2491
Cfr10I	RCCGGY	2 cut(s)	386, 2389
Cfr13I	GGNCC	5 cut(s)	120, 224, 290, 671, 1728
Cfr9I	CCCGGG	1 cut(s)	2543
ClaI	ATCGAT	1 cut(s)	367
CseI	GACGC	1 cut(s)	709
Csp6I	GTAC	6 cut(s)	552, 750, 1390, 1571, 1647, 2007
CspCI	CAANNNNNGTGG	2 cut(s)	955, 990
CviQI	GTAC	6 cut(s)	552, 750, 1390, 1571, 1647, 2007
DdeI	CTNAG	6 cut(s)	1275, 1415, 1690, 1905, 2367, 2523
DraIII	CACNNNGTG	1 cut(s)	302
EaeI	YGGCCR	4 cut(s)	72, 496, 666, 2624
Eam1104I	CTCTTC	2 cut(s)	166, 208
EarI	CTCTTC	2 cut(s)	166, 208
Ecl136II	GAGCTC	1 cut(s)	86
Eco130I	CCWWGG	5 cut(s)	524, 579, 1248, 1968, 2118
Eco24I	GRGCYC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	290
Eco53kI	GAGCTC	1 cut(s)	86
Eco57I	CTGAAG	2 cut(s)	623, 2133
Eco72I	CACGTG	1 cut(s)	1196
Eco88I	CYCGRG	3 cut(s)	1299, 2414, 2543
EcoICRI	GAGCTC	1 cut(s)	86
EcoNI	CCTNNNNNAGG	1 cut(s)	177
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRII	CCWGG	3 cut(s)	886, 1116, 1285
EcoT14I	CCWWGG	5 cut(s)	524, 579, 1248, 1968, 2118
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	88
ErhI	CCWWGG	5 cut(s)	524, 579, 1248, 1968, 2118
FalI	AAGNNNNNCTT	2 cut(s)	892, 924
FaqI	GGGAC	2 cut(s)	782, 2011
FauI	CCCGC	1 cut(s)	182
FbaI	TGATCA	1 cut(s)	1707
FblI	GTMKAC	1 cut(s)	2089
FokI	GGATG	6 cut(s)	349, 556, 613, 1100, 1490, 2657
FriOI	GRGCYC	1 cut(s)	88
FspBI	CTAG	2 cut(s)	2097, 2508
GlaI	GCGC	3 cut(s)	188, 1827, 2490
GsaI	CCCAGC	1 cut(s)	539
GsuI	CTGGAG	1 cut(s)	1424
HaeII	RGCGCY	1 cut(s)	2492
HaeIII	GGCC	9 cut(s)	74, 121, 226, 498, 668, 673, 1729, 1948, 2626
HapII	CCGG	5 cut(s)	387, 669, 765, 2390, 2544
HgaI	GACGC	1 cut(s)	709
HhaI	GCGC	3 cut(s)	189, 1828, 2491
Hin6I	GCGC	3 cut(s)	187, 1826, 2489
HinP1I	GCGC	3 cut(s)	187, 1826, 2489
HincII	GTYRAC	1 cut(s)	2090
HindII	GTYRAC	1 cut(s)	2090
HindIII	AAGCTT	1 cut(s)	2228
HpaII	CCGG	5 cut(s)	387, 669, 765, 2390, 2544
Hpy166II	GTNNAC	4 cut(s)	293, 320, 554, 2090
Hpy8I	GTNNAC	4 cut(s)	293, 320, 554, 2090
Hpy99I	CGWCG	2 cut(s)	83, 158
HpyCH4III	ACNGT	9 cut(s)	142, 719, 800, 1394, 1519, 1854, 1900, 1937, 2215
HpyCH4IV	ACGT	2 cut(s)	598, 1195
HpyF3I	CTNAG	6 cut(s)	1275, 1415, 1690, 1905, 2367, 2523
HpySE526I	ACGT	2 cut(s)	598, 1195
HspAI	GCGC	3 cut(s)	187, 1826, 2489
KpnI	GGTACC	1 cut(s)	1393
Ksp22I	TGATCA	1 cut(s)	1707
LguI	GCTCTTC	1 cut(s)	166
LmnI	GCTCC	8 cut(s)	83, 155, 175, 265, 583, 1153, 2248, 2648
LweI	GCATC	9 cut(s)	373, 575, 910, 986, 1009, 1063, 1223, 1512, 1813
MaeI	CTAG	2 cut(s)	2097, 2508
MaeII	ACGT	2 cut(s)	598, 1195
MaeIII	GTNAC	7 cut(s)	697, 786, 847, 863, 1168, 2036, 2291
MfeI	CAATTG	2 cut(s)	480, 1101
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	3 cut(s)	88, 152, 2144
MlsI	TGGCCA	2 cut(s)	498, 2626
MluNI	TGGCCA	2 cut(s)	498, 2626
MlyI	GAGTC	7 cut(s)	239, 429, 627, 794, 860, 2095, 2348
MmeI	TCCRAC	1 cut(s)	61
Mox20I	TGGCCA	2 cut(s)	498, 2626
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	2 cut(s)	498, 2626
MseI	TTAA	4 cut(s)	1058, 1316, 1869, 2424
MslI	CAYNNNNRTG	4 cut(s)	68, 498, 513, 1703
Msp20I	TGGCCA	2 cut(s)	498, 2626
MspA1I	CMGCKG	1 cut(s)	2288
MspCI	CTTAAG	1 cut(s)	1057
MspI	CCGG	5 cut(s)	387, 669, 765, 2390, 2544
MspR9I	CCNGG	7 cut(s)	670, 766, 888, 1118, 1287, 2544, 2545
MunI	CAATTG	2 cut(s)	480, 1101
Mva1269I	GAATGC	2 cut(s)	703, 2272
MvaI	CCWGG	3 cut(s)	888, 1118, 1287
MvnI	CGCG	2 cut(s)	187, 189
NciI	CCSGG	4 cut(s)	670, 766, 2544, 2545
NcoI	CCATGG	2 cut(s)	579, 1968
NlaIV	GGNNCC	6 cut(s)	225, 546, 1098, 1391, 1730, 2250
NmuCI	GTSAC	5 cut(s)	697, 786, 863, 1168, 2291
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	349, 2342
OliI	CACNNNNGTG	1 cut(s)	513
PaeI	GCATGC	1 cut(s)	349
PciI	ACATGT	1 cut(s)	2338
PciSI	GCTCTTC	1 cut(s)	166
PctI	GAATGC	2 cut(s)	703, 2272
PfeI	GAWTC	5 cut(s)	905, 1139, 1295, 1975, 2660
PflMI	CCANNNNNTGG	1 cut(s)	317
PleI	GAGTC	7 cut(s)	239, 428, 627, 793, 860, 2094, 2348
PmaCI	CACGTG	1 cut(s)	1196
PmlI	CACGTG	1 cut(s)	1196
PpsI	GAGTC	7 cut(s)	239, 428, 627, 793, 860, 2094, 2348
Ppu21I	YACGTR	1 cut(s)	1196
PscI	ACATGT	1 cut(s)	2338
PshBI	ATTAAT	1 cut(s)	1869
PsiI	TTATAA	1 cut(s)	201
Psp124BI	GAGCTC	1 cut(s)	88
Psp6I	CCWGG	3 cut(s)	886, 1116, 1285
PspCI	CACGTG	1 cut(s)	1196
PspFI	CCCAGC	1 cut(s)	535
PspGI	CCWGG	3 cut(s)	886, 1116, 1285
PspN4I	GGNNCC	6 cut(s)	225, 546, 1098, 1391, 1730, 2250
PspPI	GGNCC	5 cut(s)	120, 224, 290, 671, 1728
PstI	CTGCAG	1 cut(s)	2139
PstNI	CAGNNNCTG	1 cut(s)	1904
PsuI	RGATCY	1 cut(s)	544
PvuII	CAGCTG	1 cut(s)	2288
RsaI	GTAC	6 cut(s)	553, 751, 1391, 1572, 1648, 2008
RsaNI	GTAC	6 cut(s)	552, 750, 1390, 1571, 1647, 2007
RseI	CAYNNNNRTG	4 cut(s)	68, 498, 513, 1703
SacI	GAGCTC	1 cut(s)	88
SalI	GTCGAC	1 cut(s)	2088
SapI	GCTCTTC	1 cut(s)	166
SaqAI	TTAA	4 cut(s)	1058, 1316, 1869, 2424
Sau96I	GGNCC	5 cut(s)	120, 224, 290, 671, 1728
SchI	GAGTC	7 cut(s)	239, 429, 627, 794, 860, 2095, 2348
ScrFI	CCNGG	7 cut(s)	670, 766, 888, 1118, 1287, 2544, 2545
SduI	GDGCHC	3 cut(s)	88, 152, 2144
SfaNI	GCATC	9 cut(s)	373, 575, 910, 986, 1009, 1063, 1223, 1512, 1813
SfcI	CTRYAG	3 cut(s)	103, 177, 2135
SinI	GGWCC	1 cut(s)	290
SmaI	CCCGGG	1 cut(s)	2545
SmiMI	CAYNNNNRTG	4 cut(s)	68, 498, 513, 1703
SmlI	CTYRAG	4 cut(s)	635, 948, 1057, 1182
SmoI	CTYRAG	4 cut(s)	635, 948, 1057, 1182
SphI	GCATGC	1 cut(s)	349
SsiI	CCGC	5 cut(s)	75, 118, 136, 189, 1321
SspI	AATATT	1 cut(s)	561
SspMI	CTAG	2 cut(s)	2097, 2508
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	7 cut(s)	668, 764, 886, 1116, 1285, 2542, 2543
StyI	CCWWGG	5 cut(s)	524, 579, 1248, 1968, 2118
TaaI	ACNGT	9 cut(s)	142, 719, 800, 1394, 1519, 1854, 1900, 1937, 2215
TaiI	ACGT	2 cut(s)	601, 1198
TaqI	TCGA	4 cut(s)	367, 991, 2089, 2536
TatI	WGTACW	2 cut(s)	551, 2006
TauI	GCSGC	2 cut(s)	77, 121
TfiI	GAWTC	5 cut(s)	905, 1139, 1295, 1975, 2660
Tru1I	TTAA	4 cut(s)	1058, 1316, 1869, 2424
Tru9I	TTAA	4 cut(s)	1058, 1316, 1869, 2424
TscAI	CASTG	8 cut(s)	303, 798, 930, 1522, 1857, 1905, 1942, 2371
TseFI	GTSAC	5 cut(s)	697, 786, 863, 1168, 2291
Tsp45I	GTSAC	5 cut(s)	697, 786, 863, 1168, 2291
TspDTI	ATGAA	8 cut(s)	291, 353, 426, 516, 749, 1308, 1322, 1494
TspGWI	ACGGA	2 cut(s)	142, 2413
TspMI	CCCGGG	1 cut(s)	2543
TspRI	CASTG	8 cut(s)	303, 798, 930, 1522, 1857, 1905, 1942, 2371
Van91I	CCANNNNNTGG	1 cut(s)	317
Vha464I	CTTAAG	1 cut(s)	1057
VpaK11BI	GGWCC	1 cut(s)	290
VspI	ATTAAT	1 cut(s)	1869
XagI	CCTNNNNNAGG	1 cut(s)	177
XapI	RAATTY	4 cut(s)	659, 1606, 1719, 2074
XbaI	TCTAGA	1 cut(s)	2507
XceI	RCATGY	2 cut(s)	349, 2342
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1739, 2259
XmaI	CCCGGG	1 cut(s)	2543
XmiI	GTMKAC	1 cut(s)	2089
XspI	CTAG	2 cut(s)	2097, 2508
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.