Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00893

Orthogroup ID

OG0008506

Physical Location & Seq

Genomic Coordinates Reverse (-)

17001 .. 23712

Gene Structure 6712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G019850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2682 bp

ATGCATTTAGGGGTTTTGGGGGGTTTATCTCTCTACCACTCCATATACTCACCTCCCTTGCCCACTCAAATGGCCGCCGTCGGAGCTCTCTCGCCGTTCCCCTACAGCCTCCTCTGGCGACCCAAGTCTTCAAACCGCACCGTTTCGTGCTCCGTCGGCTCTTCTACTGCTCCAACCGGCACGCGCGGGTCTAATTATAAAAGATCAGGAAGAGTGGAGGGGCCTCGGAAAAGTATGGAAGACTCTGTTCAGAGAAAGATGGAGCAGTTTTATGAAGGGAGAGATGGTCCACCACTGCGTGTTTTGCCAATCGGTGGACTGGGAGAAATTGGGATGAATTGCATGCTGGTTGGGAATTATGATCGATATATACTGATTGATGCCGGTATCATGTTTCCAGACTTTGATGAACTTGGAGTCCAAAAGATAATACCTGATACCACATTTATCAGAAAATGGAAACACAAAATTGAAGCAATTGTCATTACACATGGCCATGAAGATCACATTGGTGCGTTGCCTTGGGTGATCCCAGCTTTGGATCCCAGCACACCAATATTTGCATCATCCTTCACCATGGAGCTTATTAGGAAACGTCTGAAGGAAAATGGGATTTTTGTTCCATCCAGACTCAAGATGTTCAGAACAAAGAGGAAATTTATGGCCGGGCCATTTGAAATTGAGCCTATCCGAGTGACACATTCTATTCCTGACTGTTGTGGATTAGTTCTTCGCTGTGCTGATGGTACAATTCTTCATACCGGGGACTGGAAGATTGACGAGTCACCACTGGACGGTCAAGGTTTTGATCGTGAAGGTTTGGAAGAACTTTCAAAAGAAGGAGTAACATTGATGATGAGTGACTCTACAAATGTTCTCTCACCTGGAAGGACAACAAGTGAATCTTCTGTGGCAGATGCACTGATGAGGCATATTTCAGCAGCTCAAGGGAGGGTTATTACCACCCAGTTTGCATCAAACATACATCGACTTGGAAGTGTGAAAGCTGCTGCTGATGCTACTGGTAGAAAGTTGGTATTTGTTGGTATGTCCTTAAGGACATATCTTGATGCAGCTTGGAGGGATGGGAAGGCACCAATTGATCCATCAACCCTGGTGAAAGTGGAAGATATTGATTCCTATGCTCCAAAGGATTTGCTAATCGTCACAACTGGCTCTCAAGCAGAACCACGTGCAGCTCTAAATCTTGCATCATTTGGAAGTAGTCATTCTGTCAAACTGACCAAGGAAGATATAATTTTATATTCTGCTAAGGTTATTCCTGGTAATGAATCTCGGGTAATGAAAATGTTAAACCGCATATCAGATATGGGATCAACGATAGTGATGGGTAAGAACGAGGGGCTGCACACTTCTGGTCATGGGTACCGTGGAGAACTGGAGGAAGTGCTTAGAATTGTGAAGCCACAGCACTTTCTGCCCATACATGGAGAACTCTTGTTTCTCAAAGAGCATGAATTGCTTGGGAGATCAACTGGCATCCATCACACCACTGTAATAAAGAATGGGGAAATGCTTGGGGTTTCTCATTTGAGAAACAGAAGGGTACTTTCAAATGGTTTCACCTTGCTTGGAAAGGAGAATTTGCAGTTGAAATATAGTGATGGTGATAAAGCATTTGGTACATCAAGCGACCTTTGTGTTGATGAGAGACTAAAAATTGCCTTAGATGGCATAATAGTGATCAGCATGGAAATTTTACGGCCCCAAAATGTAAATGGTCTGGCTGAAAGTAGCATAAAAGGAAAGATAAGAATTACCACCCGATGTTTGTGGCTTGACAAAGGAAAGCTATATGATGCGCTCTATAAAGCTGCCCATGCTGCACTGTCAAGCTGCCCTATTAATTGTCCTTTACCTCACATGGAAAGAACAGTGTCTGAGGTATTGAGGAAATTGGTAAGAAAATACAGTGGTAAAAGGCCAGAAGTTATTGCTATTGCCATGGAGAATCCCACAGCAGTTCTTGCCGATGAGGTCAGTACAAGACTATCTGGAAAGTCCCATGTTGGTTACGAGAGGTCAGCTTTACGAAAAGTAATTGATGGAAATTCAAATAAGAGTCGACCAACTAGGACAGAAGCAAATGCAGCCAAGGACAATACACATCTGCAGAGTACCACTTCAGAGCAAGATTTTGAAGATGATGGTGGTGAAGTCAAAGCACCACTACCTGTGGAAGTTTCCACAGTCAATCCCGAAAAGCTTTCTTCTGATACAAAGGAGCCAGATGATTTCTGGAATGCAATGGTCAAGTTATCAGCTGGTGACAAATTAGCAGAAGATAAAGATGGTTTGGTTCTGCAAGAGGAACATGTAAAGAAAGATGACTCTGAAAGCACTGAGACACCAAATCCTTCAAAGCCGGTGAAACGGAACAAATGGAAGCCCGAGGAGGTTAAAAAGTTTATTGAAATGCGTGGGAAACAGCATAGCAGATTTCAAGTTGTGAAGGGGAGAATGGCGCTATGGGAAGAAATATCTAGAAACTTGTTGGCTGAGGGGATCAATCGAAGCCCCGGGCAATGCAAATCTTTGTGGTCATCTTTGGTTCAGAAATACGAGGAAAGCAAGAGTGGAAAGAGAAGCCGAAAGAGTTGGCCATATTATGAGGAAATGGATGGAGCTTTGTCTGATTCAGAGGCAATGGCAACCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008409 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009914 GO:0009942 GO:0009987 GO:0010154 GO:0010817 GO:0016043 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B Lactamase_B_2 Myb_DNA-bind_4 RMMBL

Protein Analysis

893

Amino Acids

98.82

Weight (kDa)

8.81

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	113 - 256	6.5e-08	Metallo-beta-lactamase superfamily
Lactamase_B_2	PF12706	122 - 258	3.2e-09	Beta-lactamase superfamily domain
RNase_J_b_CASP	PF22505	316 - 441	1.4e-29	Ribonuclease J, beta-CASP domain
RMMBL	PF07521	456 - 502	1.1e-06	Zn-dependent metallo-hydrolase RNA specificity domain
Myb_DNA-bind_4	PF13837	799 - 881	3.1e-22	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63420
fragaria_vesca	FvH4_5g07980 FvH4_5g07980 FvH4_5g07980 FvH4_5g07980
malus_domestica	MD06G1143600.v1.1 MD14G1158900.v1.1
prunus_persica	Prupe.5G152800_v2.0.a1 Prupe.5G152800_v2.0.a1 Prupe.5G152800_v2.0.a1
pyrus_communis	pycom06g13330 pycom14g13250
rosa_chinensis	RchiOBHm_Chr7g0190431
rosa_laevigata	RLG00000004533
rosa_multiflora	Rmu_ssc0000036.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264630
rosa_rugosa	Rorug06G0504700 Rorug06G0504700
rosa_samantha	Rh7AG110500 Rh7BG113100 Rh7CG115300
rosa_wichuraiana	Rw0G019850 Rw7G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
Acc65I	GGTACC	1 cut(s)	1386
AccB1I	GGYRCC	2 cut(s)	1093, 1386
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	2086
AccII	CGCG	2 cut(s)	184, 186
AciI	CCGC	4 cut(s)	75, 136, 186, 1318
AclWI	GGATC	6 cut(s)	523, 536, 549, 1097, 1342, 2534
AcoI	YGGCCR	4 cut(s)	72, 493, 663, 2621
AcsI	RAATTY	4 cut(s)	656, 1603, 1716, 2071
AcuI	CTGAAG	2 cut(s)	620, 2130
AcvI	CACGTG	1 cut(s)	1193
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	6 cut(s)	748, 1388, 1569, 1645, 2005, 2140
AfiI	CCNNNNNNNGG	5 cut(s)	314, 538, 768, 794, 1448
AflII	CTTAAG	1 cut(s)	1054
AflIII	ACRYGT	1 cut(s)	2335
AjnI	CCWGG	3 cut(s)	883, 1113, 1282
AjuI	GAANNNNNNNTTGG	2 cut(s)	492, 524
AleI	CACNNNNGTG	1 cut(s)	510
AloI	GAACNNNNNNTCC	2 cut(s)	402, 434
Alw21I	GWGCWC	2 cut(s)	88, 152
Alw26I	GTCTC	2 cut(s)	1666, 2360
AlwI	GGATC	6 cut(s)	523, 536, 549, 1097, 1342, 2534
AlwNI	CAGNNNCTG	1 cut(s)	1901
Ama87I	CYCGRG	3 cut(s)	1296, 2411, 2540
AoxI	GGCC	8 cut(s)	72, 221, 493, 663, 668, 1724, 1943, 2621
ApoI	RAATTY	4 cut(s)	656, 1603, 1716, 2071
AseI	ATTAAT	1 cut(s)	1866
Asp718I	GGTACC	1 cut(s)	1386
AspLEI	GCGC	3 cut(s)	186, 1825, 2488
AspS9I	GGNCC	4 cut(s)	221, 287, 668, 1725
AsuC2I	CCSGG	4 cut(s)	667, 763, 2541, 2542
AvaI	CYCGRG	3 cut(s)	1296, 2411, 2540
AvaII	GGWCC	1 cut(s)	287
BalI	TGGCCA	2 cut(s)	495, 2623
BamHI	GGATCC	1 cut(s)	541
BanI	GGYRCC	2 cut(s)	1093, 1386
BanII	GRGCYC	1 cut(s)	88
BbrPI	CACGTG	1 cut(s)	1193
BbsI	GAAGAC	2 cut(s)	120, 246
Bbv12I	GWGCWC	2 cut(s)	88, 152
BbvCI	CCTCAGC	1 cut(s)	2520
BceAI	ACGGC	3 cut(s)	62, 79, 1739
BciT130I	CCWGG	3 cut(s)	885, 1115, 1284
BclI	TGATCA	1 cut(s)	1704
BcnI	CCSGG	4 cut(s)	667, 763, 2541, 2542
BcoDI	GTCTC	2 cut(s)	1666, 2360
BfaI	CTAG	2 cut(s)	2094, 2505
BfmI	CTRYAG	2 cut(s)	103, 2132
BfoI	RGCGCY	1 cut(s)	2489
BfrI	CTTAAG	1 cut(s)	1054
Bme1390I	CCNGG	7 cut(s)	667, 763, 885, 1115, 1284, 2541, 2542
Bme18I	GGWCC	1 cut(s)	287
BmeT110I	CYCGRG	3 cut(s)	1296, 2411, 2540
BmgT120I	GGNCC	4 cut(s)	221, 287, 668, 1725
BmiI	GGNNCC	6 cut(s)	222, 543, 1095, 1388, 1727, 2247
BmrFI	CCNGG	7 cut(s)	667, 763, 885, 1115, 1284, 2541, 2542
BmrI	ACTGGG	2 cut(s)	329, 961
BmsI	GCATC	9 cut(s)	370, 572, 907, 983, 1006, 1060, 1220, 1509, 1810
BmuI	ACTGGG	2 cut(s)	329, 961
BoxI	GACNNNNGTC	1 cut(s)	124
BpiI	GAAGAC	2 cut(s)	120, 246
BpmI	CTGGAG	1 cut(s)	1421
Bpu10I	CCTNAGC	2 cut(s)	1272, 2520
BpuEI	CTTGAG	3 cut(s)	617, 930, 1164
BpuMI	CCSGG	4 cut(s)	667, 763, 2541, 2542
Bsa29I	ATCGAT	1 cut(s)	364
BsaAI	YACGTR	1 cut(s)	1193
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	5 cut(s)	314, 538, 768, 794, 1448
Bse118I	RCCGGY	3 cut(s)	176, 383, 2386
Bse1I	ACTGG	8 cut(s)	324, 773, 795, 967, 1027, 1177, 1404, 1501
Bse3DI	GCAATG	3 cut(s)	2274, 2552, 2673
BseBI	CCWGG	3 cut(s)	885, 1115, 1284
BseCI	ATCGAT	1 cut(s)	364
BseGI	GGATG	6 cut(s)	339, 566, 623, 1090, 1500, 2647
BseLI	CCNNNNNNNGG	5 cut(s)	314, 538, 768, 794, 1448
BseMI	GCAATG	3 cut(s)	2274, 2552, 2673
BseMII	CTCAG	3 cut(s)	1893, 2355, 2511
BseNI	ACTGG	8 cut(s)	324, 773, 795, 967, 1027, 1177, 1404, 1501
BseRI	GAGGAG	2 cut(s)	101, 2429
BseYI	CCCAGC	2 cut(s)	532, 545
BsgI	GTGCAG	3 cut(s)	1215, 1352, 1830
Bsh1236I	CGCG	2 cut(s)	184, 186
BshFI	GGCC	8 cut(s)	74, 223, 495, 665, 670, 1726, 1945, 2623
BshNI	GGYRCC	2 cut(s)	1093, 1386
BshVI	ATCGAT	1 cut(s)	364
BsiHKAI	GWGCWC	2 cut(s)	88, 152
BsiHKCI	CYCGRG	3 cut(s)	1296, 2411, 2540
BsiSI	CCGG	6 cut(s)	177, 384, 666, 762, 2387, 2541
BslFI	GGGAC	2 cut(s)	779, 2008
BslI	CCNNNNNNNGG	5 cut(s)	314, 538, 768, 794, 1448
BsmAI	GTCTC	2 cut(s)	1666, 2360
BsmFI	GGGAC	2 cut(s)	779, 2008
BsmI	GAATGC	1 cut(s)	2269
BsnI	GGCC	8 cut(s)	74, 223, 495, 665, 670, 1726, 1945, 2623
BsoBI	CYCGRG	3 cut(s)	1296, 2411, 2540
Bsp1286I	GDGCHC	2 cut(s)	88, 152
Bsp19I	CCATGG	2 cut(s)	576, 1965
BspACI	CCGC	4 cut(s)	75, 136, 186, 1318
BspANI	GGCC	8 cut(s)	74, 223, 495, 665, 670, 1726, 1945, 2623
BspCNI	CTCAG	3 cut(s)	1894, 2356, 2512
BspDI	ATCGAT	1 cut(s)	364
BspFNI	CGCG	2 cut(s)	184, 186
BspLI	GGNNCC	6 cut(s)	222, 543, 1095, 1388, 1727, 2247
BspMAI	CTGCAG	1 cut(s)	2136
BspPI	GGATC	6 cut(s)	523, 536, 549, 1097, 1342, 2534
BspQI	GCTCTTC	1 cut(s)	166
BspT107I	GGYRCC	2 cut(s)	1093, 1386
BspTI	CTTAAG	1 cut(s)	1054
BsrDI	GCAATG	3 cut(s)	2274, 2552, 2673
BsrFI	RCCGGY	3 cut(s)	176, 383, 2386
BsrI	ACTGG	8 cut(s)	324, 773, 795, 967, 1027, 1177, 1404, 1501
BssAI	RCCGGY	3 cut(s)	176, 383, 2386
BssT1I	CCWWGG	5 cut(s)	521, 576, 1245, 1965, 2115
Bst2UI	CCWGG	3 cut(s)	885, 1115, 1284
Bst4CI	ACNGT	9 cut(s)	142, 716, 797, 1391, 1516, 1851, 1897, 1934, 2212
Bst6I	CTCTTC	2 cut(s)	166, 205
BstAFI	CTTAAG	1 cut(s)	1054
BstAPI	GCANNNNNTGC	3 cut(s)	1438, 1480, 1988
BstBAI	YACGTR	1 cut(s)	1193
BstC8I	GCNNGC	2 cut(s)	182, 344
BstDEI	CTNAG	6 cut(s)	1272, 1412, 1687, 1902, 2364, 2520
BstDSI	CCRYGG	3 cut(s)	576, 1390, 1965
BstF5I	GGATG	6 cut(s)	339, 566, 623, 1090, 1500, 2647
BstFNI	CGCG	2 cut(s)	184, 186
BstH2I	RGCGCY	1 cut(s)	2489
BstHHI	GCGC	3 cut(s)	186, 1825, 2488
BstMAI	GTCTC	2 cut(s)	1666, 2360
BstNI	CCWGG	3 cut(s)	885, 1115, 1284
BstNSI	RCATGY	2 cut(s)	346, 2339
BstPAI	GACNNNNGTC	1 cut(s)	124
BstSCI	CCNGG	7 cut(s)	665, 761, 883, 1113, 1282, 2539, 2540
BstSFI	CTRYAG	2 cut(s)	103, 2132
BstUI	CGCG	2 cut(s)	184, 186
BstV2I	GAAGAC	2 cut(s)	120, 246
BstX2I	RGATCY	1 cut(s)	541
BstXI	CCANNNNNNTGG	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	541
Bsu15I	ATCGAT	1 cut(s)	364
BsuRI	GGCC	8 cut(s)	74, 223, 495, 665, 670, 1726, 1945, 2623
BsuTUI	ATCGAT	1 cut(s)	364
BtgI	CCRYGG	3 cut(s)	576, 1390, 1965
BtsCI	GGATG	6 cut(s)	339, 566, 623, 1090, 1500, 2647
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	8 cut(s)	293, 788, 920, 1512, 1847, 1902, 1939, 2361
Cac8I	GCNNGC	2 cut(s)	182, 344
CaiI	CAGNNNCTG	1 cut(s)	1901
CfoI	GCGC	3 cut(s)	186, 1825, 2488
Cfr10I	RCCGGY	3 cut(s)	176, 383, 2386
Cfr13I	GGNCC	4 cut(s)	221, 287, 668, 1725
Cfr9I	CCCGGG	1 cut(s)	2540
ClaI	ATCGAT	1 cut(s)	364
Csp6I	GTAC	6 cut(s)	747, 1387, 1568, 1644, 2004, 2139
CspCI	CAANNNNNGTGG	2 cut(s)	952, 987
CviQI	GTAC	6 cut(s)	747, 1387, 1568, 1644, 2004, 2139
DdeI	CTNAG	6 cut(s)	1272, 1412, 1687, 1902, 2364, 2520
DraIII	CACNNNGTG	1 cut(s)	299
EaeI	YGGCCR	4 cut(s)	72, 493, 663, 2621
Eam1104I	CTCTTC	2 cut(s)	166, 205
EarI	CTCTTC	2 cut(s)	166, 205
Ecl136II	GAGCTC	1 cut(s)	86
Eco130I	CCWWGG	5 cut(s)	521, 576, 1245, 1965, 2115
Eco24I	GRGCYC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	86
Eco57I	CTGAAG	2 cut(s)	620, 2130
Eco72I	CACGTG	1 cut(s)	1193
Eco88I	CYCGRG	3 cut(s)	1296, 2411, 2540
EcoICRI	GAGCTC	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRII	CCWGG	3 cut(s)	883, 1113, 1282
EcoT14I	CCWWGG	5 cut(s)	521, 576, 1245, 1965, 2115
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	88
ErhI	CCWWGG	5 cut(s)	521, 576, 1245, 1965, 2115
FalI	AAGNNNNNCTT	2 cut(s)	889, 921
FaqI	GGGAC	2 cut(s)	779, 2008
FauI	CCCGC	1 cut(s)	179
FbaI	TGATCA	1 cut(s)	1704
FblI	GTMKAC	1 cut(s)	2086
FokI	GGATG	6 cut(s)	346, 553, 610, 1097, 1487, 2654
FriOI	GRGCYC	1 cut(s)	88
FspBI	CTAG	2 cut(s)	2094, 2505
GlaI	GCGC	3 cut(s)	185, 1824, 2487
GsaI	CCCAGC	2 cut(s)	536, 549
GsuI	CTGGAG	1 cut(s)	1421
HaeII	RGCGCY	1 cut(s)	2489
HaeIII	GGCC	8 cut(s)	74, 223, 495, 665, 670, 1726, 1945, 2623
HapII	CCGG	6 cut(s)	177, 384, 666, 762, 2387, 2541
HhaI	GCGC	3 cut(s)	186, 1825, 2488
Hin6I	GCGC	3 cut(s)	184, 1823, 2486
HinP1I	GCGC	3 cut(s)	184, 1823, 2486
HincII	GTYRAC	1 cut(s)	2087
HindII	GTYRAC	1 cut(s)	2087
HindIII	AAGCTT	1 cut(s)	2225
HpaII	CCGG	6 cut(s)	177, 384, 666, 762, 2387, 2541
Hpy166II	GTNNAC	3 cut(s)	290, 317, 2087
Hpy8I	GTNNAC	3 cut(s)	290, 317, 2087
Hpy99I	CGWCG	2 cut(s)	83, 158
HpyCH4III	ACNGT	9 cut(s)	142, 716, 797, 1391, 1516, 1851, 1897, 1934, 2212
HpyCH4IV	ACGT	2 cut(s)	595, 1192
HpyF3I	CTNAG	6 cut(s)	1272, 1412, 1687, 1902, 2364, 2520
HpySE526I	ACGT	2 cut(s)	595, 1192
HspAI	GCGC	3 cut(s)	184, 1823, 2486
KpnI	GGTACC	1 cut(s)	1390
Ksp22I	TGATCA	1 cut(s)	1704
LguI	GCTCTTC	1 cut(s)	166
LmnI	GCTCC	8 cut(s)	83, 155, 175, 262, 580, 1150, 2245, 2645
LweI	GCATC	9 cut(s)	370, 572, 907, 983, 1006, 1060, 1220, 1509, 1810
MaeI	CTAG	2 cut(s)	2094, 2505
MaeII	ACGT	2 cut(s)	595, 1192
MaeIII	GTNAC	7 cut(s)	694, 783, 844, 860, 1165, 2033, 2288
MfeI	CAATTG	2 cut(s)	477, 1098
MflI	RGATCY	1 cut(s)	541
MhlI	GDGCHC	2 cut(s)	88, 152
MlsI	TGGCCA	2 cut(s)	495, 2623
MluNI	TGGCCA	2 cut(s)	495, 2623
MlyI	GAGTC	7 cut(s)	236, 426, 624, 791, 857, 2092, 2345
MmeI	TCCRAC	2 cut(s)	61, 197
Mox20I	TGGCCA	2 cut(s)	495, 2623
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	2 cut(s)	495, 2623
MseI	TTAA	4 cut(s)	1055, 1313, 1866, 2421
MslI	CAYNNNNRTG	4 cut(s)	68, 495, 510, 1700
Msp20I	TGGCCA	2 cut(s)	495, 2623
MspA1I	CMGCKG	1 cut(s)	2285
MspCI	CTTAAG	1 cut(s)	1054
MspI	CCGG	6 cut(s)	177, 384, 666, 762, 2387, 2541
MspR9I	CCNGG	7 cut(s)	667, 763, 885, 1115, 1284, 2541, 2542
MunI	CAATTG	2 cut(s)	477, 1098
Mva1269I	GAATGC	1 cut(s)	2269
MvaI	CCWGG	3 cut(s)	885, 1115, 1284
MvnI	CGCG	2 cut(s)	184, 186
NciI	CCSGG	4 cut(s)	667, 763, 2541, 2542
NcoI	CCATGG	2 cut(s)	576, 1965
NlaIV	GGNNCC	6 cut(s)	222, 543, 1095, 1388, 1727, 2247
NmuCI	GTSAC	5 cut(s)	694, 783, 860, 1165, 2288
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	346, 2339
OliI	CACNNNNGTG	1 cut(s)	510
PaeI	GCATGC	1 cut(s)	346
PciI	ACATGT	1 cut(s)	2335
PciSI	GCTCTTC	1 cut(s)	166
PctI	GAATGC	1 cut(s)	2269
PfeI	GAWTC	5 cut(s)	902, 1136, 1292, 1972, 2657
PflMI	CCANNNNNTGG	1 cut(s)	314
PleI	GAGTC	7 cut(s)	236, 425, 624, 790, 857, 2091, 2345
PmaCI	CACGTG	1 cut(s)	1193
PmlI	CACGTG	1 cut(s)	1193
PpsI	GAGTC	7 cut(s)	236, 425, 624, 790, 857, 2091, 2345
Ppu21I	YACGTR	1 cut(s)	1193
PscI	ACATGT	1 cut(s)	2335
PshAI	GACNNNNGTC	1 cut(s)	124
PshBI	ATTAAT	1 cut(s)	1866
PsiI	TTATAA	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	88
Psp6I	CCWGG	3 cut(s)	883, 1113, 1282
PspCI	CACGTG	1 cut(s)	1193
PspFI	CCCAGC	2 cut(s)	532, 545
PspGI	CCWGG	3 cut(s)	883, 1113, 1282
PspN4I	GGNNCC	6 cut(s)	222, 543, 1095, 1388, 1727, 2247
PspPI	GGNCC	4 cut(s)	221, 287, 668, 1725
PstI	CTGCAG	1 cut(s)	2136
PstNI	CAGNNNCTG	1 cut(s)	1901
PsuI	RGATCY	1 cut(s)	541
PvuII	CAGCTG	1 cut(s)	2285
RsaI	GTAC	6 cut(s)	748, 1388, 1569, 1645, 2005, 2140
RsaNI	GTAC	6 cut(s)	747, 1387, 1568, 1644, 2004, 2139
RseI	CAYNNNNRTG	4 cut(s)	68, 495, 510, 1700
SacI	GAGCTC	1 cut(s)	88
SalI	GTCGAC	1 cut(s)	2085
SapI	GCTCTTC	1 cut(s)	166
SaqAI	TTAA	4 cut(s)	1055, 1313, 1866, 2421
Sau96I	GGNCC	4 cut(s)	221, 287, 668, 1725
SchI	GAGTC	7 cut(s)	236, 426, 624, 791, 857, 2092, 2345
ScrFI	CCNGG	7 cut(s)	667, 763, 885, 1115, 1284, 2541, 2542
SduI	GDGCHC	2 cut(s)	88, 152
SfaNI	GCATC	9 cut(s)	370, 572, 907, 983, 1006, 1060, 1220, 1509, 1810
SfcI	CTRYAG	2 cut(s)	103, 2132
SinI	GGWCC	1 cut(s)	287
SmaI	CCCGGG	1 cut(s)	2542
SmiMI	CAYNNNNRTG	4 cut(s)	68, 495, 510, 1700
SmlI	CTYRAG	4 cut(s)	632, 945, 1054, 1179
SmoI	CTYRAG	4 cut(s)	632, 945, 1054, 1179
SphI	GCATGC	1 cut(s)	346
SsiI	CCGC	4 cut(s)	75, 136, 186, 1318
SspI	AATATT	1 cut(s)	558
SspMI	CTAG	2 cut(s)	2094, 2505
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	7 cut(s)	665, 761, 883, 1113, 1282, 2539, 2540
StyI	CCWWGG	5 cut(s)	521, 576, 1245, 1965, 2115
TaaI	ACNGT	9 cut(s)	142, 716, 797, 1391, 1516, 1851, 1897, 1934, 2212
TaiI	ACGT	2 cut(s)	598, 1195
TaqI	TCGA	4 cut(s)	364, 988, 2086, 2533
TatI	WGTACW	1 cut(s)	2003
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	5 cut(s)	902, 1136, 1292, 1972, 2657
Tru1I	TTAA	4 cut(s)	1055, 1313, 1866, 2421
Tru9I	TTAA	4 cut(s)	1055, 1313, 1866, 2421
TscAI	CASTG	8 cut(s)	300, 795, 927, 1519, 1854, 1902, 1939, 2368
TseFI	GTSAC	5 cut(s)	694, 783, 860, 1165, 2288
Tsp45I	GTSAC	5 cut(s)	694, 783, 860, 1165, 2288
TspDTI	ATGAA	8 cut(s)	288, 350, 423, 513, 746, 1305, 1319, 1491
TspGWI	ACGGA	2 cut(s)	142, 2410
TspMI	CCCGGG	1 cut(s)	2540
TspRI	CASTG	8 cut(s)	300, 795, 927, 1519, 1854, 1902, 1939, 2368
Van91I	CCANNNNNTGG	1 cut(s)	314
Vha464I	CTTAAG	1 cut(s)	1054
VpaK11BI	GGWCC	1 cut(s)	287
VspI	ATTAAT	1 cut(s)	1866
XapI	RAATTY	4 cut(s)	656, 1603, 1716, 2071
XbaI	TCTAGA	1 cut(s)	2504
XceI	RCATGY	2 cut(s)	346, 2339
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1736, 2256
XmaI	CCCGGG	1 cut(s)	2540
XmiI	GTMKAC	1 cut(s)	2086
XspI	CTAG	2 cut(s)	2094, 2505
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.