Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008506

Physical Location & Seq

Genomic Coordinates Forward (+)

58207525 .. 58215383

Gene Structure 7859 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2706 bp

ATGCATTTAGGGGTTTTGGGAGGTTTATCACTCTACCACTCCATATACTCACCTCCCTTGCCGACTCAAATGGCCGCCGTCGGAGCTCTCTCGCCCTTCCCCTACAGCCTCCTCTGGCGGCCCAAGTCTTCAAACCGCACCGTTTCGTGCTCCGTCGGCTCTTCTACTGCTCCTACAGGCACGCGCGGGTCTAATTATAAAAGATCAGGAAGAGTGGAGGGGCCTCGGAAAAGTATGGAAGACTCTGTTCAGAGAAAGATGGAGCAGTTTTATGAAGGGAGAGATGGTCCACCACTACGTGTTTTGCCAATCGGTGGACTGGGAGAAATTGGGATGAATTGCATGCTGGTTGGGAATTATGATCGATATATACTGATTGATGCCGGTATCATGTTTCCAGAATCATATGTGATATGTGATTTCAGCTTCGATGAACTTGGAGTCCAAAAGATAATACCTGATACGACATTTATCAGAAAATGGAAACACAAAATTGAAGCAATTGTCATTACACATGGCCATGAAGATCACATTGGTGCGTTGCCTTGGGTGATCCCAGCTTTGGATCCCAGTACACCAATATTTGCATCATCCTTCACCATGGAGCTTATTAGGAAACGTCTGAAGGAAAATGGGATTTTTGTTCCATCCAGACTCAAGATGTTCAGAACAAAGAGGAAATTTATGGCCGGGCCATTTGAAATTGAGCCTGTCCGAGTGACACATTCTATTCCCGACTGTTGTGGATTAGTTCTTCGCTGTGCTGATGGTACAATTCTTCATACTGGGGACTGGAAGATTGATGAGTCACCACTGGATGGTCAAGGTTTTGATCGTGAAGGTTTGGAAGAACTTTCAAAAGAAGGAGTAACATTGATGATGAGTGACTCTACAAATGTTCTCTCACCTGGAAGGACAACAAGTGAATCTTCTGTGGCAGATGCACTGATGAGGCATATTTCAGCAGCTCAAGGGAGGGTTATTACCACCCAGTTTGCTTCAAACATACATCGACTTGGAAGTGTGAAAGCGGCTGCTGATGCTACTGGTAGAAAGTTGGTATTTGTTGGTATGTCCTTAAGGACATATCTTGATGCAGCTTGGAGGGATGGGAAGGCACCAATTGATCCATCAACCCTGGTGAAAGTGGAAGATATTGATTCCTATGCTCCAAAGGATTTGCTAATTGTCACAACTGGCTCTCAAGCAGAACCACGTGCAGCTCTAAATCTTGCATCATTTGGAAGTAGTCATTCTGTCAAACTGACCAAGGAAGATATAATTTTATATTCTGCTAAGGTTATTCCTGGTAATGAATCTCGGGTAATGAAAATGTTAAACCGCATATCAGATATGGGATCAACGATAGTGATGGGTAAGAACGAGGGGCTGCACACTTCTGGTCATGGGTACCGTGGAGAACTGGAGGAAGTGCTTAGAATTGTCAAGCCGCAGCACTTTCTGCCCATACATGGAGAACTCTTGTTTCTCAAAGAGCATGAATTGCTTGGTAGATCAACTGGCGTCCATCACACCACTGTAATAAAGAATGGGGAAATGCTCGGGGTTTCTCATTTGAGAAACAGAAGGGTACTTTCAAATGGTTTCACCTTGCTTGGAAAGGAGAATTTGCAGTTGAAATATAGTGATGGTGATAAAGCATTTGGTACATCAAGCGACCTTTGTGTTGATGAGAGACTAAAGATTGCCTTAGATGGCATAATAGTGGTCAGCATGGAAATTTTACGGCCCCAAAATGTAAATGGTCTGGCTGAAAGTAGCATAAAAGGAAAGATAAGAATTACTACCCGATGTTTGTGGCTTGACAAAGGAAAGCTATATGATGCGCTCTATAAAGCTGCCCATGCTGCACTGTCAAGCTGCCCTATTAATTGTCCTTTACCTCACATGGAAAGAACAGTGTCTGAGGTATTGAGGAAATTGGTAAGAAAATACAGTGGTAAAAGGCCAGAAGTTATTGCTATTGCCATGGAGAATCCCACAGCAGTTCTTGCCGATGAGGTCAGTACAAGACTATCTGGGAAGTCCCATGTTGGTTACGAGAGGTCAGCTTTACGAAAAGTAATTGATGGAAATTCAAATAAGAGTCGACCAACTAGGACAGAAGCAAATGAAGCCAAGGACAATACACATTTGCAGAGTACCACTTCAGAGCAAGATTTTGAAGATGATGGTGGTGAAGTCAAAGCACCACTACCTGTGGAAGTTTCCACTAGTTCAATTGTCAATCCCGGAAAGCTTTCTTCTGATACAAAGGAGCCAGATGATTTCTGGAATGCAACGGTCAAGTTATCAGCTGGTGACAAATTAGCAGAAGACAAAAATGGTTTGGTTCTGCAAGAGAAGAAAGATGACTCTGAAAGCACTGAAACACCAAATCCTTCAAAGCCGGTGAAACGGAACAAATGGAAGCCCGAGGAGGTTAAAAAATTTATTGAAATGCGTGGGAAACTGCATAGCAGATTTCAAGTTGTGAAGGGGAGAATGGCGCTATGGGAAGAAATATCTAGAAACTTGTTGGCTGAGGGGATCAATCGAAGCCCCGGGCAATGCAAATCTTTGTGGGCATCTTTGGTTCAGAAATACGAGGAAAGCAAGAGTGGAAAGAGAAGCCAAAAGAGCTGGCCATATTATGAGGAAATGGATGGAGCTTTGTCTGATTCAGAGGCAATGGCAACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000578 GO:0003006 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006810 GO:0006996 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0008409 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009657 GO:0009658 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009880 GO:0009914 GO:0009942 GO:0009987 GO:0010154 GO:0010817 GO:0016043 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051179 GO:0051234 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lactamase_B Lactamase_B_2 Myb_DNA-bind_4 RMMBL

Protein Analysis

901

Amino Acids

99.53

Weight (kDa)

8.78

Isoelectric Point (pI)

42.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lactamase_B	PF00753	113 - 264	4e-07	Metallo-beta-lactamase superfamily
Lactamase_B_2	PF12706	156 - 266	8.8e-09	Beta-lactamase superfamily domain
RNase_J_b_CASP	PF22505	324 - 449	1.4e-29	Ribonuclease J, beta-CASP domain
RMMBL	PF07521	464 - 504	1.4e-06	Zn-dependent metallo-hydrolase RNA specificity domain
Myb_DNA-bind_4	PF13837	807 - 889	1.4e-22	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63420
fragaria_vesca	FvH4_5g07980 FvH4_5g07980 FvH4_5g07980 FvH4_5g07980
malus_domestica	MD06G1143600.v1.1 MD14G1158900.v1.1
prunus_persica	Prupe.5G152800_v2.0.a1 Prupe.5G152800_v2.0.a1 Prupe.5G152800_v2.0.a1
pyrus_communis	pycom06g13330 pycom14g13250
rosa_chinensis	RchiOBHm_Chr7g0190431
rosa_laevigata	RLG00000004533
rosa_multiflora	Rmu_ssc0000036.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264630
rosa_rugosa	Rorug06G0504700 Rorug06G0504700
rosa_samantha	Rh7AG110500 Rh7BG113100 Rh7CG115300
rosa_wichuraiana	Rw0G019850 Rw7G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
Acc65I	GGTACC	1 cut(s)	1410
AccB1I	GGYRCC	2 cut(s)	1117, 1410
AccB7I	CCANNNNNTGG	2 cut(s)	314, 818
AccI	GTMKAC	1 cut(s)	2110
AccII	CGCG	2 cut(s)	184, 186
AciI	CCGC	7 cut(s)	75, 118, 136, 186, 1031, 1342, 1451
AclWI	GGATC	6 cut(s)	547, 560, 573, 1121, 1366, 2558
AcoI	YGGCCR	4 cut(s)	72, 517, 687, 2645
AcsI	RAATTY	5 cut(s)	680, 1627, 1740, 2095, 2450
AcuI	CTGAAG	2 cut(s)	644, 2154
AcvI	CACGTG	1 cut(s)	1217
AcyI	GRCGYC	1 cut(s)	1524
AdeI	CACNNNGTG	1 cut(s)	299
AfaI	GTAC	7 cut(s)	574, 772, 1412, 1593, 1669, 2029, 2164
AfiI	CCNNNNNNNGG	4 cut(s)	314, 562, 818, 1472
AflII	CTTAAG	1 cut(s)	1078
AflIII	ACRYGT	1 cut(s)	298
AhlI	ACTAGT	1 cut(s)	2234
AjnI	CCWGG	3 cut(s)	907, 1137, 1306
AjuI	GAANNNNNNNTTGG	2 cut(s)	516, 548
AleI	CACNNNNGTG	1 cut(s)	534
AloI	GAACNNNNNNTCC	2 cut(s)	426, 458
Alw21I	GWGCWC	2 cut(s)	88, 152
Alw26I	GTCTC	1 cut(s)	1690
AlwI	GGATC	6 cut(s)	547, 560, 573, 1121, 1366, 2558
AlwNI	CAGNNNCTG	1 cut(s)	1925
Ama87I	CYCGRG	4 cut(s)	1320, 1562, 2435, 2564
AoxI	GGCC	9 cut(s)	72, 119, 221, 517, 687, 692, 1748, 1967, 2645
ApeKI	GCWGC	9 cut(s)	965, 1034, 1097, 1220, 1390, 1453, 1859, 1868, 1881
ApoI	RAATTY	5 cut(s)	680, 1627, 1740, 2095, 2450
AseI	ATTAAT	1 cut(s)	1890
Asp700I	GAANNNNTTC	1 cut(s)	2260
Asp718I	GGTACC	1 cut(s)	1410
AspLEI	GCGC	3 cut(s)	186, 1849, 2512
AspS9I	GGNCC	5 cut(s)	120, 221, 287, 692, 1749
AsuC2I	CCSGG	4 cut(s)	691, 2253, 2565, 2566
AvaI	CYCGRG	4 cut(s)	1320, 1562, 2435, 2564
AvaII	GGWCC	1 cut(s)	287
BalI	TGGCCA	2 cut(s)	519, 2647
BamHI	GGATCC	1 cut(s)	565
BanI	GGYRCC	2 cut(s)	1117, 1410
BanII	GRGCYC	1 cut(s)	88
BbrPI	CACGTG	1 cut(s)	1217
BbsI	GAAGAC	3 cut(s)	120, 246, 2343
Bbv12I	GWGCWC	2 cut(s)	88, 152
BbvCI	CCTCAGC	1 cut(s)	2544
BbvI	GCAGC	9 cut(s)	977, 1021, 1109, 1232, 1377, 1465, 1846, 1855, 1868
BceAI	ACGGC	2 cut(s)	62, 1763
BciT130I	CCWGG	3 cut(s)	909, 1139, 1308
BcnI	CCSGG	4 cut(s)	691, 2253, 2565, 2566
BcoDI	GTCTC	1 cut(s)	1690
BcuI	ACTAGT	1 cut(s)	2234
BfaI	CTAG	3 cut(s)	2118, 2235, 2529
BfmI	CTRYAG	2 cut(s)	103, 174
BfoI	RGCGCY	1 cut(s)	2513
BfrI	CTTAAG	1 cut(s)	1078
Bme1390I	CCNGG	7 cut(s)	691, 909, 1139, 1308, 2253, 2565, 2566
Bme18I	GGWCC	1 cut(s)	287
BmeT110I	CYCGRG	4 cut(s)	1320, 1562, 2435, 2564
BmgT120I	GGNCC	5 cut(s)	120, 221, 287, 692, 1749
BmiI	GGNNCC	6 cut(s)	222, 567, 1119, 1412, 1751, 2280
BmrFI	CCNGG	7 cut(s)	691, 909, 1139, 1308, 2253, 2565, 2566
BmrI	ACTGGG	4 cut(s)	329, 564, 795, 985
BmsI	GCATC	8 cut(s)	370, 596, 931, 1030, 1084, 1244, 1834, 2597
BmuI	ACTGGG	4 cut(s)	329, 564, 795, 985
BpiI	GAAGAC	3 cut(s)	120, 246, 2343
BpmI	CTGGAG	1 cut(s)	1445
Bpu10I	CCTNAGC	2 cut(s)	1296, 2544
BpuEI	CTTGAG	3 cut(s)	641, 954, 1188
BpuMI	CCSGG	4 cut(s)	691, 2253, 2565, 2566
Bsa29I	ATCGAT	1 cut(s)	364
BsaAI	YACGTR	2 cut(s)	299, 1217
BsaHI	GRCGYC	1 cut(s)	1524
BsaXI	ACNNNNNCTCC	2 cut(s)	271, 301
Bsc4I	CCNNNNNNNGG	4 cut(s)	314, 562, 818, 1472
Bse118I	RCCGGY	2 cut(s)	383, 2410
Bse3DI	GCAATG	2 cut(s)	2576, 2697
BseBI	CCWGG	3 cut(s)	909, 1139, 1308
BseCI	ATCGAT	1 cut(s)	364
BseGI	GGATG	6 cut(s)	339, 590, 647, 823, 1114, 2671
BseLI	CCNNNNNNNGG	4 cut(s)	314, 562, 818, 1472
BseMI	GCAATG	2 cut(s)	2576, 2697
BseMII	CTCAG	2 cut(s)	1917, 2535
BseRI	GAGGAG	2 cut(s)	101, 2453
BseXI	GCAGC	9 cut(s)	977, 1021, 1109, 1232, 1377, 1465, 1846, 1855, 1868
BseYI	CCCAGC	1 cut(s)	556
BsgI	GTGCAG	3 cut(s)	1239, 1376, 1854
Bsh1236I	CGCG	2 cut(s)	184, 186
BshFI	GGCC	9 cut(s)	74, 121, 223, 519, 689, 694, 1750, 1969, 2647
BshNI	GGYRCC	2 cut(s)	1117, 1410
BshVI	ATCGAT	1 cut(s)	364
BsiHKAI	GWGCWC	2 cut(s)	88, 152
BsiHKCI	CYCGRG	4 cut(s)	1320, 1562, 2435, 2564
BsiSI	CCGG	5 cut(s)	384, 690, 2253, 2411, 2565
BslFI	GGGAC	2 cut(s)	803, 2032
BslI	CCNNNNNNNGG	4 cut(s)	314, 562, 818, 1472
BsmAI	GTCTC	1 cut(s)	1690
BsmFI	GGGAC	2 cut(s)	803, 2032
BsmI	GAATGC	1 cut(s)	2302
BsnI	GGCC	9 cut(s)	74, 121, 223, 519, 689, 694, 1750, 1969, 2647
BsoBI	CYCGRG	4 cut(s)	1320, 1562, 2435, 2564
Bsp1286I	GDGCHC	2 cut(s)	88, 152
Bsp19I	CCATGG	2 cut(s)	600, 1989
BspACI	CCGC	7 cut(s)	75, 118, 136, 186, 1031, 1342, 1451
BspANI	GGCC	9 cut(s)	74, 121, 223, 519, 689, 694, 1750, 1969, 2647
BspCNI	CTCAG	2 cut(s)	1918, 2536
BspDI	ATCGAT	1 cut(s)	364
BspFNI	CGCG	2 cut(s)	184, 186
BspLI	GGNNCC	6 cut(s)	222, 567, 1119, 1412, 1751, 2280
BspPI	GGATC	6 cut(s)	547, 560, 573, 1121, 1366, 2558
BspQI	GCTCTTC	1 cut(s)	166
BspT107I	GGYRCC	2 cut(s)	1117, 1410
BspTI	CTTAAG	1 cut(s)	1078
BsrDI	GCAATG	2 cut(s)	2576, 2697
BsrFI	RCCGGY	2 cut(s)	383, 2410
BssAI	RCCGGY	2 cut(s)	383, 2410
BssNI	GRCGYC	1 cut(s)	1524
BssT1I	CCWWGG	5 cut(s)	545, 600, 1269, 1989, 2139
Bst2UI	CCWGG	3 cut(s)	909, 1139, 1308
Bst4CI	ACNGT	8 cut(s)	142, 740, 1415, 1540, 1875, 1921, 1958, 2305
Bst6I	CTCTTC	2 cut(s)	166, 205
BstACI	GRCGYC	1 cut(s)	1524
BstAFI	CTTAAG	1 cut(s)	1078
BstAPI	GCANNNNNTGC	3 cut(s)	1462, 1504, 2012
BstBAI	YACGTR	2 cut(s)	299, 1217
BstC8I	GCNNGC	3 cut(s)	182, 344, 2645
BstDEI	CTNAG	5 cut(s)	1296, 1436, 1711, 1926, 2544
BstDSI	CCRYGG	3 cut(s)	600, 1414, 1989
BstF5I	GGATG	6 cut(s)	339, 590, 647, 823, 1114, 2671
BstFNI	CGCG	2 cut(s)	184, 186
BstH2I	RGCGCY	1 cut(s)	2513
BstHHI	GCGC	3 cut(s)	186, 1849, 2512
BstMAI	GTCTC	1 cut(s)	1690
BstNI	CCWGG	3 cut(s)	909, 1139, 1308
BstNSI	RCATGY	1 cut(s)	346
BstSCI	CCNGG	7 cut(s)	689, 907, 1137, 1306, 2251, 2563, 2564
BstSFI	CTRYAG	2 cut(s)	103, 174
BstUI	CGCG	2 cut(s)	184, 186
BstV1I	GCAGC	9 cut(s)	977, 1021, 1109, 1232, 1377, 1465, 1846, 1855, 1868
BstV2I	GAAGAC	3 cut(s)	120, 246, 2343
BstX2I	RGATCY	1 cut(s)	565
BstYI	RGATCY	1 cut(s)	565
Bsu15I	ATCGAT	1 cut(s)	364
BsuRI	GGCC	9 cut(s)	74, 121, 223, 519, 689, 694, 1750, 1969, 2647
BsuTUI	ATCGAT	1 cut(s)	364
BtgI	CCRYGG	3 cut(s)	600, 1414, 1989
BtsCI	GGATG	6 cut(s)	339, 590, 647, 823, 1114, 2671
BtsIMutI	CAGTG	7 cut(s)	812, 944, 1536, 1871, 1926, 1963, 2385
Cac8I	GCNNGC	3 cut(s)	182, 344, 2645
CaiI	CAGNNNCTG	1 cut(s)	1925
CfoI	GCGC	3 cut(s)	186, 1849, 2512
Cfr10I	RCCGGY	2 cut(s)	383, 2410
Cfr13I	GGNCC	5 cut(s)	120, 221, 287, 692, 1749
Cfr9I	CCCGGG	1 cut(s)	2564
ClaI	ATCGAT	1 cut(s)	364
CseI	GACGC	1 cut(s)	1513
Csp6I	GTAC	7 cut(s)	573, 771, 1411, 1592, 1668, 2028, 2163
CspCI	CAANNNNNGTGG	2 cut(s)	976, 1011
CviQI	GTAC	7 cut(s)	573, 771, 1411, 1592, 1668, 2028, 2163
DdeI	CTNAG	5 cut(s)	1296, 1436, 1711, 1926, 2544
DraIII	CACNNNGTG	1 cut(s)	299
EaeI	YGGCCR	4 cut(s)	72, 517, 687, 2645
Eam1104I	CTCTTC	2 cut(s)	166, 205
EarI	CTCTTC	2 cut(s)	166, 205
Ecl136II	GAGCTC	1 cut(s)	86
Eco130I	CCWWGG	5 cut(s)	545, 600, 1269, 1989, 2139
Eco24I	GRGCYC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	86
Eco57I	CTGAAG	2 cut(s)	644, 2154
Eco72I	CACGTG	1 cut(s)	1217
Eco88I	CYCGRG	4 cut(s)	1320, 1562, 2435, 2564
EcoICRI	GAGCTC	1 cut(s)	86
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRII	CCWGG	3 cut(s)	907, 1137, 1306
EcoT14I	CCWWGG	5 cut(s)	545, 600, 1269, 1989, 2139
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	88
ErhI	CCWWGG	5 cut(s)	545, 600, 1269, 1989, 2139
FalI	AAGNNNNNCTT	4 cut(s)	913, 945, 1694, 1726
FaqI	GGGAC	2 cut(s)	803, 2032
FauI	CCCGC	1 cut(s)	179
FauNDI	CATATG	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	2110
FokI	GGATG	6 cut(s)	346, 577, 634, 830, 1121, 2678
FriOI	GRGCYC	1 cut(s)	88
FspBI	CTAG	3 cut(s)	2118, 2235, 2529
GlaI	GCGC	3 cut(s)	185, 1848, 2511
GsaI	CCCAGC	1 cut(s)	560
GsuI	CTGGAG	1 cut(s)	1445
HaeII	RGCGCY	1 cut(s)	2513
HaeIII	GGCC	9 cut(s)	74, 121, 223, 519, 689, 694, 1750, 1969, 2647
HapII	CCGG	5 cut(s)	384, 690, 2253, 2411, 2565
HgaI	GACGC	1 cut(s)	1513
HhaI	GCGC	3 cut(s)	186, 1849, 2512
Hin1I	GRCGYC	1 cut(s)	1524
Hin6I	GCGC	3 cut(s)	184, 1847, 2510
HinP1I	GCGC	3 cut(s)	184, 1847, 2510
HincII	GTYRAC	1 cut(s)	2111
HindII	GTYRAC	1 cut(s)	2111
HindIII	AAGCTT	1 cut(s)	2258
HpaII	CCGG	5 cut(s)	384, 690, 2253, 2411, 2565
Hpy166II	GTNNAC	4 cut(s)	290, 317, 575, 2111
Hpy188III	TCNNGA	9 cut(s)	207, 398, 651, 658, 734, 836, 1091, 2293, 2529
Hpy8I	GTNNAC	4 cut(s)	290, 317, 575, 2111
Hpy99I	CGWCG	2 cut(s)	83, 158
HpyCH4III	ACNGT	8 cut(s)	142, 740, 1415, 1540, 1875, 1921, 1958, 2305
HpyCH4IV	ACGT	3 cut(s)	298, 619, 1216
HpyF3I	CTNAG	5 cut(s)	1296, 1436, 1711, 1926, 2544
HpySE526I	ACGT	3 cut(s)	298, 619, 1216
Hsp92I	GRCGYC	1 cut(s)	1524
HspAI	GCGC	3 cut(s)	184, 1847, 2510
KpnI	GGTACC	1 cut(s)	1414
LguI	GCTCTTC	1 cut(s)	166
LmnI	GCTCC	8 cut(s)	83, 155, 175, 262, 604, 1174, 2278, 2669
Lsp1109I	GCAGC	9 cut(s)	977, 1021, 1109, 1232, 1377, 1465, 1846, 1855, 1868
LweI	GCATC	8 cut(s)	370, 596, 931, 1030, 1084, 1244, 1834, 2597
MaeI	CTAG	3 cut(s)	2118, 2235, 2529
MaeII	ACGT	3 cut(s)	298, 619, 1216
MaeIII	GTNAC	7 cut(s)	718, 807, 868, 884, 1189, 2057, 2321
MfeI	CAATTG	3 cut(s)	501, 1122, 2241
MflI	RGATCY	1 cut(s)	565
MhlI	GDGCHC	2 cut(s)	88, 152
MlsI	TGGCCA	2 cut(s)	519, 2647
MluNI	TGGCCA	2 cut(s)	519, 2647
MlyI	GAGTC	8 cut(s)	58, 236, 450, 648, 815, 881, 2116, 2369
MmeI	TCCRAC	1 cut(s)	61
Mox20I	TGGCCA	2 cut(s)	519, 2647
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	2260
MscI	TGGCCA	2 cut(s)	519, 2647
MseI	TTAA	4 cut(s)	1079, 1337, 1890, 2445
MslI	CAYNNNNRTG	3 cut(s)	519, 534, 1724
Msp20I	TGGCCA	2 cut(s)	519, 2647
MspA1I	CMGCKG	1 cut(s)	2318
MspCI	CTTAAG	1 cut(s)	1078
MspI	CCGG	5 cut(s)	384, 690, 2253, 2411, 2565
MspR9I	CCNGG	7 cut(s)	691, 909, 1139, 1308, 2253, 2565, 2566
MunI	CAATTG	3 cut(s)	501, 1122, 2241
Mva1269I	GAATGC	1 cut(s)	2302
MvaI	CCWGG	3 cut(s)	909, 1139, 1308
MvnI	CGCG	2 cut(s)	184, 186
NciI	CCSGG	4 cut(s)	691, 2253, 2565, 2566
NcoI	CCATGG	2 cut(s)	600, 1989
NdeI	CATATG	1 cut(s)	406
NlaIV	GGNNCC	6 cut(s)	222, 567, 1119, 1412, 1751, 2280
NmuCI	GTSAC	5 cut(s)	718, 807, 884, 1189, 2321
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	346
OliI	CACNNNNGTG	1 cut(s)	534
PaeI	GCATGC	1 cut(s)	346
PciSI	GCTCTTC	1 cut(s)	166
PctI	GAATGC	1 cut(s)	2302
PdmI	GAANNNNTTC	1 cut(s)	2260
PfeI	GAWTC	6 cut(s)	401, 926, 1160, 1316, 1996, 2681
PflMI	CCANNNNNTGG	2 cut(s)	314, 818
PfoI	TCCNGGA	1 cut(s)	2251
PleI	GAGTC	8 cut(s)	58, 236, 449, 648, 814, 881, 2115, 2369
PmaCI	CACGTG	1 cut(s)	1217
PmlI	CACGTG	1 cut(s)	1217
PpsI	GAGTC	8 cut(s)	58, 236, 449, 648, 814, 881, 2115, 2369
Ppu21I	YACGTR	2 cut(s)	299, 1217
PshBI	ATTAAT	1 cut(s)	1890
PsiI	TTATAA	1 cut(s)	198
Psp124BI	GAGCTC	1 cut(s)	88
Psp6I	CCWGG	3 cut(s)	907, 1137, 1306
PspCI	CACGTG	1 cut(s)	1217
PspFI	CCCAGC	1 cut(s)	556
PspGI	CCWGG	3 cut(s)	907, 1137, 1306
PspN4I	GGNNCC	6 cut(s)	222, 567, 1119, 1412, 1751, 2280
PspPI	GGNCC	5 cut(s)	120, 221, 287, 692, 1749
PstNI	CAGNNNCTG	1 cut(s)	1925
PsuI	RGATCY	1 cut(s)	565
PvuII	CAGCTG	1 cut(s)	2318
RsaI	GTAC	7 cut(s)	574, 772, 1412, 1593, 1669, 2029, 2164
RsaNI	GTAC	7 cut(s)	573, 771, 1411, 1592, 1668, 2028, 2163
RseI	CAYNNNNRTG	3 cut(s)	519, 534, 1724
SacI	GAGCTC	1 cut(s)	88
SalI	GTCGAC	1 cut(s)	2109
SapI	GCTCTTC	1 cut(s)	166
SaqAI	TTAA	4 cut(s)	1079, 1337, 1890, 2445
Sau96I	GGNCC	5 cut(s)	120, 221, 287, 692, 1749
SchI	GAGTC	8 cut(s)	58, 236, 450, 648, 815, 881, 2116, 2369
ScrFI	CCNGG	7 cut(s)	691, 909, 1139, 1308, 2253, 2565, 2566
SduI	GDGCHC	2 cut(s)	88, 152
SfaNI	GCATC	8 cut(s)	370, 596, 931, 1030, 1084, 1244, 1834, 2597
SfcI	CTRYAG	2 cut(s)	103, 174
SinI	GGWCC	1 cut(s)	287
SmaI	CCCGGG	1 cut(s)	2566
SmiMI	CAYNNNNRTG	3 cut(s)	519, 534, 1724
SmlI	CTYRAG	4 cut(s)	656, 969, 1078, 1203
SmoI	CTYRAG	4 cut(s)	656, 969, 1078, 1203
SpeI	ACTAGT	1 cut(s)	2234
SphI	GCATGC	1 cut(s)	346
SsiI	CCGC	7 cut(s)	75, 118, 136, 186, 1031, 1342, 1451
SspI	AATATT	1 cut(s)	582
SspMI	CTAG	3 cut(s)	2118, 2235, 2529
SstI	GAGCTC	1 cut(s)	88
StyD4I	CCNGG	7 cut(s)	689, 907, 1137, 1306, 2251, 2563, 2564
StyI	CCWWGG	5 cut(s)	545, 600, 1269, 1989, 2139
TaaI	ACNGT	8 cut(s)	142, 740, 1415, 1540, 1875, 1921, 1958, 2305
TaiI	ACGT	3 cut(s)	301, 622, 1219
TaqI	TCGA	5 cut(s)	364, 429, 1012, 2110, 2557
TatI	WGTACW	2 cut(s)	572, 2027
TauI	GCSGC	4 cut(s)	77, 121, 1034, 1453
TfiI	GAWTC	6 cut(s)	401, 926, 1160, 1316, 1996, 2681
Tru1I	TTAA	4 cut(s)	1079, 1337, 1890, 2445
Tru9I	TTAA	4 cut(s)	1079, 1337, 1890, 2445
TscAI	CASTG	7 cut(s)	819, 951, 1543, 1878, 1926, 1963, 2392
TseFI	GTSAC	5 cut(s)	718, 807, 884, 1189, 2321
TseI	GCWGC	9 cut(s)	965, 1034, 1097, 1220, 1390, 1453, 1859, 1868, 1881
Tsp45I	GTSAC	5 cut(s)	718, 807, 884, 1189, 2321
TspDTI	ATGAA	9 cut(s)	288, 350, 447, 537, 770, 1329, 1343, 1515, 2148
TspGWI	ACGGA	2 cut(s)	142, 2434
TspMI	CCCGGG	1 cut(s)	2564
TspRI	CASTG	7 cut(s)	819, 951, 1543, 1878, 1926, 1963, 2392
Van91I	CCANNNNNTGG	2 cut(s)	314, 818
Vha464I	CTTAAG	1 cut(s)	1078
VpaK11BI	GGWCC	1 cut(s)	287
VspI	ATTAAT	1 cut(s)	1890
XapI	RAATTY	5 cut(s)	680, 1627, 1740, 2095, 2450
XbaI	TCTAGA	1 cut(s)	2528
XceI	RCATGY	1 cut(s)	346
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1760, 2289
XmaI	CCCGGG	1 cut(s)	2564
XmiI	GTMKAC	1 cut(s)	2110
XmnI	GAANNNNTTC	1 cut(s)	2260
XspI	CTAG	3 cut(s)	2118, 2235, 2529
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.