Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013570

Physical Location & Seq

Genomic Coordinates Forward (+)

10841701 .. 10845649

Gene Structure 3949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17192

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2187 bp

ATGGAGTCTTCTGCAACCACCATGGCTTTGAGAGCCACCTCTTCTTCTTCTTCTTCCTCTTCCTCTTCATCCTCCTCCTCCTTCTTCTCCATTCCCCCAACCCAAAAGCCCCAGTCTTTGCCTTTCAAGCTCCAACCTTTTCGCTTTAAGAGGCACCAATCCCTAAAATGCATCCAATCCCCACCGTCCGATCCCAACCCCAAAAACCCTACCTTCTCCTGCTCCGCCGCCACCCTCTCCCCCTCTCCCACCGCCGACCTCGCTCCCTCCAAGCTCCACCGCCTCGTCTCCGAGTTCCAGTCCCTCACGCAGCCGATCGACCGTGTCAAGCGGCTGCTGCACTACGCCAGCCTCCTCCCGCCGCTCCCCGATTCGGGTCGGGCCGACTCCAACCGGGTCATGGGCTGCACGGCCCAGGTCTGGCTGGAGGCCAAGATGGACCAGGGCGGCAAGATGAGGTTCGCGGCGGACAGCGATTCCGAGATCACTAGAGGGTTCTGCTCGTGTTTGGTGTCCGTTCTCGACGGGGCTGCGCCGGAGGAGGTCTTGGCCGTCAAGACCGACGACCTGGCGGCGCTCAACGTTGTTGGGTTGCCCGGTGCGCAGAGGTCTAGGGTTAATACGTGGCATAATGTGTTGGTCAGTATGCACAAAAAGACTAAAGCTTTAATGGCTGAGCTACAGGGGAAGCCGCCGTTCGAGCGCTTCCCGTCTCTGGTCATCACCGCCGATGGGATTCAGGCCAAGGGTAGCTACGCCGAAGCCCAGGCAAGGTATTTGTTTCCGGATGAGGCTAAGGTTGAGGAACTTGTTAATGTGTTGAAAGAGAAGAAGATTGGGGTGGTTGCTCATTTTTACATGGATCCTGAGGTTCAGGGTATTTTGACTGCAGCAAAGAAGCATTGGCCTCACATTCACATTTCGGATTCGTTGGTCATGGCAGATTCGGCTGTGAAGATGGCGAAAGATGGATGCGAGTTTATTACAGTTTTGGGTGTTGATTTTATGTCTGAAAATGTCAGGGCGATCCTTGATCAGGCCGGCTTTCAAAAGGTCGGTGTTTTCAGGATGTCAAATGAACGAATTGGTTGTTCTTTGGCAGATGCTGCATCTTCCCCTTCTTATTTGAGTTATCTCGAGAATGCTTCAAGGTCACCTCAGTCATTGCATGTAGTCTACATTAATACATCACTGGAAACAAAAGCTTATGCACATGAGCTTGTGCCAACAATTACCTGTACTTCTTCAAATGTTGTCCAAACCATTCTGCAGGCTTTTTCTCAAGTGCCAGATTTAAACGTATGGTACGGTCCTGACTCTTACATGGGTGCAAATATTAGAGTATTGCTTGAGCAGATGACAAAGATGACGGATGAAGAAATTGCTGAGATACATCCAGCACACAATAGAGACTCAATCAGATCTCTGCTACCTCGCCTACATCATTATCAGGATGGGACATGCATAGTGCATCATTTGTTTGGAAATGAAGTTGTGAACAGGATAAATGAAATGTATTGTGATGCATTTCTAACTGCTCATTTCGAGGTCCCTGGAGAAATGTTTGCTCTGGCAATGGAAGCAAAGAGGAGAGGAATGGGAGTTGTGGGGTCTACCCAAAACATTCTAGATTTCATAAAACAGAGGGTTCAAGAGGCTTTAGACAGAAATGTCAATGACCACCTTCAGTTCATATTAGGAACAGAATCTGGAATGGTGACTTCAATTGTTGCACTAGTTCGCAGTTTGTTAGGTTCTGCAAAGTCAGGGGGAGCAAAGATCAATGTTGAAATTGTATTTCCAGTTTCATCAGACTCAATGACAAGCACATCATCCAATTCTTCTTCAGGCCTTAACCCTATTAAGGTGGGTGATGTCATACTACCTGTTATACCTGGAGTGGCTAGTGGGGAGGGGTGTTCAATTCATGGTGGGTGTGCATCCTGTCCGTACATGAAGATGAATTCTCTCAGCTCCCTCCTGAAGGTTTGCTACCACCTACCTGATGAGACTGACAGCGCCATTTCTGCATATGAAGCTGCACGATTCAAGTTGCAAACTCCCAATGGAAGATCAGTTGCGGATGTTGGGTGTGAACCAATTCTGCACATGAGGCACTTCCAGGCCTCTAAAAAACTTCCAGAGAAGCTTGTTTTCCAGATCTGTAATCCGTTCGGTAATGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006139 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0008987 GO:0009058 GO:0009060 GO:0009066 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009893 GO:0009987 GO:0015980 GO:0016043 GO:0016053 GO:0016226 GO:0017144 GO:0018130 GO:0019222 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0019805 GO:0022607 GO:0030234 GO:0031163 GO:0031323 GO:0031325 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042762 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046394 GO:0046483 GO:0046496 GO:0046874 GO:0046983 GO:0048037 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051176 GO:0051186 GO:0051188 GO:0051536 GO:0051539 GO:0051540 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0072524 GO:0072525 GO:0090407 GO:0098772 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

NadA SufE

Protein Analysis

728

Amino Acids

79.21

Weight (kDa)

6.76

Isoelectric Point (pI)

57.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufE	PF02657	97 - 218	8.3e-30	Fe-S metabolism associated domain
NadA	PF02445	270 - 576	1.2e-30	Quinolinate synthetase A protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50210
fragaria_vesca	FvH4_5g06430 FvH4_5g06430 FvH4_5g06430 FvH4_5g06430
malus_domestica	MD06G1164800.v1.1 MD14G1170100.v1.1
prunus_persica	Prupe.5G164300_v2.0.a1
pyrus_communis	pycom06g14740
rosa_chinensis	RchiOBHm_Chr7g0192351
rosa_laevigata	RLG00000004377
rosa_multiflora	Rmu_sc0003108.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263110
rosa_rugosa	Rorug07G0000600
rosa_samantha	Rh7BG126800 Rh7CG128400 Rh7DG128400
rosa_wichuraiana	Rw7G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1670
Acc16I	TGCGCA	1 cut(s)	603
AccB1I	GGYRCC	1 cut(s)	153
AccBSI	CCGCTC	1 cut(s)	364
AccI	GTMKAC	2 cut(s)	1176, 1613
AccII	CGCG	1 cut(s)	464
AccIII	TCCGGA	1 cut(s)	784
AclI	AACGTT	1 cut(s)	582
AclWI	GGATC	4 cut(s)	185, 857, 870, 1021
AcoI	YGGCCR	1 cut(s)	549
AcsI	RAATTY	1 cut(s)	1963
AcuI	CTGAAG	3 cut(s)	1670, 1830, 2003
AfaI	GTAC	3 cut(s)	1240, 1307, 1952
AfeI	AGCGCT	1 cut(s)	704
AhlI	ACTAGT	1 cut(s)	1735
AjnI	CCWGG	7 cut(s)	414, 441, 567, 765, 1552, 1894, 2121
Alw26I	GTCTC	4 cut(s)	292, 717, 1404, 2003
AlwI	GGATC	4 cut(s)	185, 857, 870, 1021
AlwNI	CAGNNNCTG	2 cut(s)	1106, 1709
Ama87I	CYCGRG	1 cut(s)	1136
Aor13HI	TCCGGA	1 cut(s)	784
Aor51HI	AGCGCT	1 cut(s)	704
AoxI	GGCC	9 cut(s)	381, 411, 429, 549, 741, 905, 1038, 1849, 2124
ApeKI	GCWGC	8 cut(s)	310, 334, 337, 405, 530, 890, 1106, 2039
ApoI	RAATTY	1 cut(s)	1963
AseI	ATTAAT	1 cut(s)	1182
Asp700I	GAANNNNTTC	1 cut(s)	2100
AspLEI	GCGC	5 cut(s)	535, 577, 604, 705, 2021
AspS9I	GGNCC	5 cut(s)	381, 412, 439, 1310, 1549
AsuC2I	CCSGG	2 cut(s)	395, 597
AsuHPI	GGTGA	4 cut(s)	715, 1146, 1729, 1883
AvaI	CYCGRG	1 cut(s)	1136
AvaII	GGWCC	3 cut(s)	439, 1310, 1549
AxyI	CCTNAGG	1 cut(s)	867
BamHI	GGATCC	1 cut(s)	862
BanI	GGYRCC	1 cut(s)	153
BarI	GAAGNNNNNNTAC	2 cut(s)	1976, 2008
BauI	CACGAG	1 cut(s)	502
BbvI	GCAGC	8 cut(s)	321, 322, 324, 392, 517, 902, 1093, 2026
BccI	CCATC	5 cut(s)	430, 725, 952, 962, 1448
BceAI	ACGGC	3 cut(s)	426, 536, 679
BcgI	CGANNNNNNTGC	2 cut(s)	512, 546
BciT130I	CCWGG	7 cut(s)	416, 443, 569, 767, 1554, 1896, 2123
BclI	TGATCA	1 cut(s)	1033
BcnI	CCSGG	2 cut(s)	395, 597
BcoDI	GTCTC	4 cut(s)	292, 717, 1404, 2003
BcuI	ACTAGT	1 cut(s)	1735
BfaI	CTAG	5 cut(s)	489, 612, 1628, 1736, 1905
BfmI	CTRYAG	3 cut(s)	680, 888, 1268
BfoI	RGCGCY	3 cut(s)	578, 706, 2022
BglII	AGATCT	2 cut(s)	1421, 2160
BlpI	GCTNAGC	1 cut(s)	675
Bme1390I	CCNGG	9 cut(s)	395, 416, 443, 569, 597, 767, 1554, 1896, 2123
Bme18I	GGWCC	3 cut(s)	439, 1310, 1549
BmeT110I	CYCGRG	1 cut(s)	1136
BmgT120I	GGNCC	5 cut(s)	381, 412, 439, 1310, 1549
BmiI	GGNNCC	3 cut(s)	155, 864, 1551
BmrFI	CCNGG	9 cut(s)	395, 416, 443, 569, 597, 767, 1554, 1896, 2123
BmrI	ACTGGG	1 cut(s)	106
BmsI	GCATC	7 cut(s)	180, 962, 1093, 1118, 1480, 1513, 1949
BmuI	ACTGGG	1 cut(s)	106
BpmI	CTGGAG	3 cut(s)	446, 1575, 1917
Bpu10I	CCTNAGC	1 cut(s)	795
Bpu1102I	GCTNAGC	1 cut(s)	675
BpuEI	CTTGAG	2 cut(s)	1266, 1370
BpuMI	CCSGG	2 cut(s)	395, 597
BsaAI	YACGTR	1 cut(s)	624
BsaJI	CCNNGG	6 cut(s)	21, 414, 442, 744, 765, 1552
BsaWI	WCCGGW	1 cut(s)	784
Bse118I	RCCGGY	1 cut(s)	1040
Bse1I	ACTGG	4 cut(s)	112, 298, 1197, 1802
Bse21I	CCTNAGG	1 cut(s)	867
Bse3DI	GCAATG	2 cut(s)	1163, 1581
BseAI	TCCGGA	1 cut(s)	784
BseBI	CCWGG	7 cut(s)	416, 443, 569, 767, 1554, 1896, 2123
BseDI	CCNNGG	6 cut(s)	21, 414, 442, 744, 765, 1552
BseMI	GCAATG	2 cut(s)	1163, 1581
BseMII	CTCAG	5 cut(s)	666, 858, 1172, 1377, 1984
BseNI	ACTGG	4 cut(s)	112, 298, 1197, 1802
BseRI	GAGGAG	5 cut(s)	64, 67, 344, 554, 1603
BseXI	GCAGC	8 cut(s)	321, 322, 324, 392, 517, 902, 1093, 2026
BsgI	GTGCAG	4 cut(s)	323, 391, 2025, 2090
Bsh1236I	CGCG	1 cut(s)	464
Bsh1285I	CGRYCG	2 cut(s)	318, 322
BshFI	GGCC	9 cut(s)	383, 413, 431, 551, 743, 907, 1040, 1851, 2126
BshNI	GGYRCC	1 cut(s)	153
BsiEI	CGRYCG	2 cut(s)	318, 322
BsiHKCI	CYCGRG	1 cut(s)	1136
BsiSI	CCGG	5 cut(s)	394, 536, 597, 785, 1041
BslFI	GGGAC	3 cut(s)	286, 1471, 1535
BsmAI	GTCTC	4 cut(s)	292, 717, 1404, 2003
BsmBI	CGTCTC	2 cut(s)	292, 717
BsmFI	GGGAC	3 cut(s)	286, 1471, 1535
BsmI	GAATGC	1 cut(s)	1147
BsnI	GGCC	9 cut(s)	383, 413, 431, 551, 743, 907, 1040, 1851, 2126
BsoBI	CYCGRG	1 cut(s)	1136
Bsp13I	TCCGGA	1 cut(s)	784
Bsp1720I	GCTNAGC	1 cut(s)	675
Bsp19I	CCATGG	1 cut(s)	21
BspANI	GGCC	9 cut(s)	383, 413, 431, 551, 743, 907, 1040, 1851, 2126
BspCNI	CTCAG	5 cut(s)	667, 859, 1171, 1378, 1983
BspEI	TCCGGA	1 cut(s)	784
BspFNI	CGCG	1 cut(s)	464
BspLI	GGNNCC	3 cut(s)	155, 864, 1551
BspMAI	CTGCAG	2 cut(s)	892, 1272
BspPI	GGATC	4 cut(s)	185, 857, 870, 1021
BspT107I	GGYRCC	1 cut(s)	153
BsrBI	CCGCTC	1 cut(s)	364
BsrDI	GCAATG	2 cut(s)	1163, 1581
BsrFI	RCCGGY	1 cut(s)	1040
BsrI	ACTGG	4 cut(s)	112, 298, 1197, 1802
BssAI	RCCGGY	1 cut(s)	1040
BssECI	CCNNGG	6 cut(s)	21, 414, 442, 744, 765, 1552
BssSI	CACGAG	1 cut(s)	502
BssT1I	CCWWGG	2 cut(s)	21, 744
Bst2BI	CACGAG	1 cut(s)	502
Bst2UI	CCWGG	7 cut(s)	416, 443, 569, 767, 1554, 1896, 2123
Bst4CI	ACNGT	4 cut(s)	186, 323, 988, 1310
Bst6I	CTCTTC	3 cut(s)	46, 64, 70
BstAPI	GCANNNNNTGC	1 cut(s)	1106
BstBAI	YACGTR	1 cut(s)	624
BstC8I	GCNNGC	3 cut(s)	349, 1042, 1272
BstDEI	CTNAG	6 cut(s)	675, 795, 867, 1158, 1386, 1970
BstDSI	CCRYGG	1 cut(s)	21
BstEII	GGTNACC	1 cut(s)	1152
BstENI	CCTNNNNNAGG	2 cut(s)	1034, 1982
BstFNI	CGCG	1 cut(s)	464
BstH2I	RGCGCY	3 cut(s)	578, 706, 2022
BstHHI	GCGC	5 cut(s)	535, 577, 604, 705, 2021
BstMAI	GTCTC	4 cut(s)	292, 717, 1404, 2003
BstMCI	CGRYCG	2 cut(s)	318, 322
BstNI	CCWGG	7 cut(s)	416, 443, 569, 767, 1554, 1896, 2123
BstNSI	RCATGY	2 cut(s)	1172, 1464
BstPI	GGTNACC	1 cut(s)	1152
BstSCI	CCNGG	9 cut(s)	393, 414, 441, 567, 595, 765, 1552, 1894, 2121
BstSFI	CTRYAG	3 cut(s)	680, 888, 1268
BstUI	CGCG	1 cut(s)	464
BstV1I	GCAGC	8 cut(s)	321, 322, 324, 392, 517, 902, 1093, 2026
BstX2I	RGATCY	3 cut(s)	862, 1421, 2160
BstYI	RGATCY	3 cut(s)	862, 1421, 2160
Bsu36I	CCTNAGG	1 cut(s)	867
BsuRI	GGCC	9 cut(s)	383, 413, 431, 551, 743, 907, 1040, 1851, 2126
BtgI	CCRYGG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	1190
Cac8I	GCNNGC	3 cut(s)	349, 1042, 1272
CaiI	CAGNNNCTG	2 cut(s)	1106, 1709
CfoI	GCGC	5 cut(s)	535, 577, 604, 705, 2021
Cfr10I	RCCGGY	1 cut(s)	1040
Cfr13I	GGNCC	5 cut(s)	381, 412, 439, 1310, 1549
Csp6I	GTAC	3 cut(s)	1239, 1306, 1951
CviQI	GTAC	3 cut(s)	1239, 1306, 1951
DdeI	CTNAG	6 cut(s)	675, 795, 867, 1158, 1386, 1970
DraI	TTTAAA	1 cut(s)	1296
DrdI	GACNNNNNNGTC	1 cut(s)	1670
DseDI	GACNNNNNNGTC	1 cut(s)	1670
EaeI	YGGCCR	1 cut(s)	549
Eam1104I	CTCTTC	3 cut(s)	46, 64, 70
EarI	CTCTTC	3 cut(s)	46, 64, 70
EciI	GGCGGA	2 cut(s)	214, 482
Eco130I	CCWWGG	2 cut(s)	21, 744
Eco147I	AGGCCT	2 cut(s)	1851, 2126
Eco47I	GGWCC	3 cut(s)	439, 1310, 1549
Eco47III	AGCGCT	1 cut(s)	704
Eco57I	CTGAAG	3 cut(s)	1670, 1830, 2003
Eco81I	CCTNAGG	1 cut(s)	867
Eco88I	CYCGRG	1 cut(s)	1136
Eco91I	GGTNACC	1 cut(s)	1152
EcoNI	CCTNNNNNAGG	2 cut(s)	1034, 1982
EcoO109I	RGGNCCY	1 cut(s)	1549
EcoO65I	GGTNACC	1 cut(s)	1152
EcoRI	GAATTC	1 cut(s)	1963
EcoRII	CCWGG	7 cut(s)	414, 441, 567, 765, 1552, 1894, 2121
EcoT14I	CCWWGG	2 cut(s)	21, 744
EcoT22I	ATGCAT	3 cut(s)	173, 1466, 1528
ErhI	CCWWGG	2 cut(s)	21, 744
Esp3I	CGTCTC	2 cut(s)	292, 717
FaqI	GGGAC	3 cut(s)	286, 1471, 1535
FauI	CCCGC	1 cut(s)	366
FauNDI	CATATG	1 cut(s)	2032
FbaI	TGATCA	1 cut(s)	1033
FblI	GTMKAC	2 cut(s)	1176, 1613
FspBI	CTAG	5 cut(s)	489, 612, 1628, 1736, 1905
FspI	TGCGCA	1 cut(s)	603
GlaI	GCGC	5 cut(s)	534, 576, 603, 704, 2020
GsuI	CTGGAG	3 cut(s)	446, 1575, 1917
HaeII	RGCGCY	3 cut(s)	578, 706, 2022
HaeIII	GGCC	9 cut(s)	383, 413, 431, 551, 743, 907, 1040, 1851, 2126
HapII	CCGG	5 cut(s)	394, 536, 597, 785, 1041
HhaI	GCGC	5 cut(s)	535, 577, 604, 705, 2021
Hin6I	GCGC	5 cut(s)	533, 575, 602, 703, 2019
HinP1I	GCGC	5 cut(s)	533, 575, 602, 703, 2019
HindIII	AAGCTT	3 cut(s)	663, 1203, 2147
HpaII	CCGG	5 cut(s)	394, 536, 597, 785, 1041
HphI	GGTGA	4 cut(s)	715, 1146, 1729, 1883
Hpy166II	GTNNAC	4 cut(s)	1177, 1498, 1614, 2096
Hpy188I	TCNGA	7 cut(s)	190, 292, 481, 925, 1012, 1421, 1813
Hpy8I	GTNNAC	4 cut(s)	1177, 1498, 1614, 2096
Hpy99I	CGWCG	2 cut(s)	527, 566
HpyAV	CCTTC	5 cut(s)	91, 223, 1128, 1694, 1978
HpyCH4III	ACNGT	4 cut(s)	186, 323, 988, 1310
HpyCH4IV	ACGT	3 cut(s)	582, 623, 1299
HpyF3I	CTNAG	6 cut(s)	675, 795, 867, 1158, 1386, 1970
HpySE526I	ACGT	3 cut(s)	582, 623, 1299
HspAI	GCGC	5 cut(s)	533, 575, 602, 703, 2019
Kpn2I	TCCGGA	1 cut(s)	784
KroI	GCCGGC	1 cut(s)	1040
KroNI	GCCGGC	1 cut(s)	1042
Ksp22I	TGATCA	1 cut(s)	1033
LmnI	GCTCC	7 cut(s)	135, 227, 268, 279, 369, 1772, 1979
Lsp1109I	GCAGC	8 cut(s)	321, 322, 324, 392, 517, 902, 1093, 2026
LweI	GCATC	7 cut(s)	180, 962, 1093, 1118, 1480, 1513, 1949
MaeI	CTAG	5 cut(s)	489, 612, 1628, 1736, 1905
MaeII	ACGT	3 cut(s)	582, 623, 1299
MaeIII	GTNAC	2 cut(s)	1152, 1717
MbiI	CCGCTC	1 cut(s)	364
MfeI	CAATTG	1 cut(s)	1725
MflI	RGATCY	3 cut(s)	862, 1421, 2160
MluCI	AATT	9 cut(s)	1083, 1230, 1380, 1725, 1791, 1837, 1923, 1963, 2100
MlyI	GAGTC	5 cut(s)	14, 380, 1310, 1406, 1808
MmeI	TCCRAC	2 cut(s)	157, 414
Mph1103I	ATGCAT	3 cut(s)	173, 1466, 1528
MroI	TCCGGA	1 cut(s)	784
MroNI	GCCGGC	1 cut(s)	1040
MroXI	GAANNNNTTC	1 cut(s)	2100
MseI	TTAA	8 cut(s)	147, 618, 668, 813, 1182, 1295, 1854, 1863
MslI	CAYNNNNRTG	1 cut(s)	1958
MspI	CCGG	5 cut(s)	394, 536, 597, 785, 1041
MspR9I	CCNGG	9 cut(s)	395, 416, 443, 569, 597, 767, 1554, 1896, 2123
MunI	CAATTG	1 cut(s)	1725
Mva1269I	GAATGC	1 cut(s)	1147
MvaI	CCWGG	7 cut(s)	416, 443, 569, 767, 1554, 1896, 2123
MvnI	CGCG	1 cut(s)	464
NaeI	GCCGGC	1 cut(s)	1042
NciI	CCSGG	2 cut(s)	395, 597
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	2032
NgoMIV	GCCGGC	1 cut(s)	1040
NlaIV	GGNNCC	3 cut(s)	155, 864, 1551
NmuCI	GTSAC	2 cut(s)	1152, 1717
NsbI	TGCGCA	1 cut(s)	603
NsiI	ATGCAT	3 cut(s)	173, 1466, 1528
NspI	RCATGY	2 cut(s)	1172, 1464
PaeR7I	CTCGAG	1 cut(s)	1136
PceI	AGGCCT	2 cut(s)	1851, 2126
PctI	GAATGC	1 cut(s)	1147
PdiI	GCCGGC	1 cut(s)	1042
PdmI	GAANNNNTTC	1 cut(s)	2100
PfeI	GAWTC	7 cut(s)	371, 476, 736, 926, 944, 1706, 2046
PflFI	GACNNNGTC	1 cut(s)	323
Ple19I	CGATCG	1 cut(s)	318
PleI	GAGTC	5 cut(s)	13, 380, 1310, 1406, 1808
PpsI	GAGTC	5 cut(s)	13, 380, 1310, 1406, 1808
Ppu21I	YACGTR	1 cut(s)	624
PpuMI	RGGWCCY	1 cut(s)	1549
PshBI	ATTAAT	1 cut(s)	1182
Psp1406I	AACGTT	1 cut(s)	582
Psp5II	RGGWCCY	1 cut(s)	1549
Psp6I	CCWGG	7 cut(s)	414, 441, 567, 765, 1552, 1894, 2121
PspEI	GGTNACC	1 cut(s)	1152
PspGI	CCWGG	7 cut(s)	414, 441, 567, 765, 1552, 1894, 2121
PspN4I	GGNNCC	3 cut(s)	155, 864, 1551
PspPI	GGNCC	5 cut(s)	381, 412, 439, 1310, 1549
PspPPI	RGGWCCY	1 cut(s)	1549
PstI	CTGCAG	2 cut(s)	892, 1272
PstNI	CAGNNNCTG	2 cut(s)	1106, 1709
PsuI	RGATCY	3 cut(s)	862, 1421, 2160
PsyI	GACNNNGTC	1 cut(s)	323
PvuI	CGATCG	1 cut(s)	318
RsaI	GTAC	3 cut(s)	1240, 1307, 1952
RsaNI	GTAC	3 cut(s)	1239, 1306, 1951
RseI	CAYNNNNRTG	1 cut(s)	1958
SaqAI	TTAA	8 cut(s)	147, 618, 668, 813, 1182, 1295, 1854, 1863
Sau96I	GGNCC	5 cut(s)	381, 412, 439, 1310, 1549
SchI	GAGTC	5 cut(s)	14, 380, 1310, 1406, 1808
ScrFI	CCNGG	9 cut(s)	395, 416, 443, 569, 597, 767, 1554, 1896, 2123
SfaNI	GCATC	7 cut(s)	180, 962, 1093, 1118, 1480, 1513, 1949
SfcI	CTRYAG	3 cut(s)	680, 888, 1268
Sfr274I	CTCGAG	1 cut(s)	1136
SinI	GGWCC	3 cut(s)	439, 1310, 1549
SlaI	CTCGAG	1 cut(s)	1136
SmiMI	CAYNNNNRTG	1 cut(s)	1958
SmlI	CTYRAG	3 cut(s)	1136, 1281, 1349
SmoI	CTYRAG	3 cut(s)	1136, 1281, 1349
SpeI	ACTAGT	1 cut(s)	1735
Sse9I	AATT	9 cut(s)	1083, 1230, 1380, 1725, 1791, 1837, 1923, 1963, 2100
SseBI	AGGCCT	2 cut(s)	1851, 2126
SspI	AATATT	1 cut(s)	1336
SspMI	CTAG	5 cut(s)	489, 612, 1628, 1736, 1905
StuI	AGGCCT	2 cut(s)	1851, 2126
StyD4I	CCNGG	9 cut(s)	393, 414, 441, 567, 595, 765, 1552, 1894, 2121
StyI	CCWWGG	2 cut(s)	21, 744
TaaI	ACNGT	4 cut(s)	186, 323, 988, 1310
TaiI	ACGT	3 cut(s)	585, 626, 1302
TaqI	TCGA	5 cut(s)	318, 522, 699, 1137, 1545
TaqII	GACCGA	1 cut(s)	575
TasI	AATT	9 cut(s)	1083, 1230, 1380, 1725, 1791, 1837, 1923, 1963, 2100
TatI	WGTACW	1 cut(s)	1238
TauI	GCSGC	7 cut(s)	230, 334, 364, 450, 467, 575, 694
TfiI	GAWTC	7 cut(s)	371, 476, 736, 926, 944, 1706, 2046
Tru1I	TTAA	8 cut(s)	147, 618, 668, 813, 1182, 1295, 1854, 1863
Tru9I	TTAA	8 cut(s)	147, 618, 668, 813, 1182, 1295, 1854, 1863
TscAI	CASTG	1 cut(s)	1197
TseFI	GTSAC	2 cut(s)	1152, 1717
TseI	GCWGC	8 cut(s)	310, 334, 337, 405, 530, 890, 1106, 2039
Tsp45I	GTSAC	2 cut(s)	1152, 1717
TspGWI	ACGGA	4 cut(s)	505, 1385, 1938, 2160
TspRI	CASTG	1 cut(s)	1197
Tth111I	GACNNNGTC	1 cut(s)	323
VpaK11BI	GGWCC	3 cut(s)	439, 1310, 1549
VspI	ATTAAT	1 cut(s)	1182
XagI	CCTNNNNNAGG	2 cut(s)	1034, 1982
XapI	RAATTY	1 cut(s)	1963
XbaI	TCTAGA	1 cut(s)	1627
XceI	RCATGY	2 cut(s)	1172, 1464
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XhoI	CTCGAG	1 cut(s)	1136
XmiI	GTMKAC	2 cut(s)	1176, 1613
XmnI	GAANNNNTTC	1 cut(s)	2100
XspI	CTAG	5 cut(s)	489, 612, 1628, 1736, 1905
Zsp2I	ATGCAT	3 cut(s)	173, 1466, 1528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.