Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013570

Physical Location & Seq

Genomic Coordinates Reverse (-)

57033265 .. 57037134

Gene Structure 3870 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00263110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1803 bp

ATGGGCTGCACGGCCCAGGTCTGGCTGGAGGCGAAGATGGACCAGGACGGCAAGATGAGGTTCGCGGCGGACAGCGATTCCGAGATCACCAGAGGGTTCTGCTCGTGTTTGGTGTCCGTTCTCGACGGGGCGGCGCCGGAGGAGGTCTTGGCGGTCAAGACCGACGACCTGGCGGCGCTCAATGTTGGGTTGCCCGGTGCGCAGAGGTCTAGGGTTAATACGTGGCATAATGTGTTGGTCAGTATGCACAAAAAGACTAAAGCTTTAATGGCTGAGCTACAGGGGAAGCCGCCGTTCGAGCGCTTCCCGTCTCTGGTCATCACCGCCGATGGGATTCAGGCCAAGGGTAGCTACGCCGAAGCCCAGGCAAGGTATTTGTTTCCGGATGAGGCTAAGGTTGAGGAACTTGTTAATGTGTTGAAAGAGAAGAAGATTGGGGTGGTTGCTCATTTTTACATGGATCCTGAGGTTCAGGGTATTTTGACTGCAGCAAAGAAGCATTGGCCTCACATCCACATTTCGGATTCGTTGGTCATGGCGGATTCGGCTGTTAAGATGGCGAAAGATGGATGCGAGTTTATTACAGTTTTGGGTGTTGATTTTATGTCTGAAAATGTCAGGGCGATCCTTGATCAGGCCGGCTTTCAAAAGGTCGGTGTTTACAGGATGTCAAATGAACGAATTGGTTGTTCTTTGGCAGATGCTGCATCTTCCCCTTCTTATATGAGTTATCTCGAGAATGCTTCAAGGTCACCTCAGTCATTGCATGTTGTCTACATTAATACATCACTGGAAACAAAAGCTTATGCACATGAGCTTGTGCCAACAATTACCTGTACTTCTTCAAATGTTGTCCAAACCATTCTGCAGGCTTTTTCTCAAGTGCCAGATTTAAACGTATGGTACGGTCCTGACTCTTACATGGGTGCAAATATTAGAGTACTACTTGAGCAGATGACAAAGATGACAGATGAAGAAATTGCTGAGATACATCCAGCACACAATAGAGACTCAATCAGATCTCTGCTACCTCGCCTGCATCATTATCAGGATGGGACATGCATAGTGCATCATTTGTTTGGAAATGAGGTTGTGAACAGGATAAATGAAATGTATTGTGATGCATTTCTAACTGCTCATTTCGAGGTCCCTGGAGAAATGTTTGCTCTAGCAATGGAAGCAAAGAGGAGAGGAATGGGAGTTGTGGGGTCTACCCAAAACATTCTAGATTTCATAAAACAGAGGGTTCAAGAGGCTTTCGATAGAAATATCAATGACCACCTTCAGTTCATATTAGGAACAGAATCTGGAATGGTGACTTCAATTGTTGCACTAGTTCGCAGTTTGTTAGGTTCTGCAAAGTCAGGGGGAGCAAAGATCAATGTTGAAATTGTTTTTCCAGTTTCATCAGACTCGATGACAAGCACATCATCCAATTCTTCTTCAGGCCTTAACCCTATTAAGGTGGGTGATGTCATACTACCTGTTATACCTGGAGTGGCTAGTGGGGAGGGGTGTTCAATTCATGGTGGGTGTGCATCCTGTCCGTACATGAAGATGAATTCTCTCAGCTCCCTCCTGAAGGTTTGCTACCACCTACCTGATGAGACTGACAACGCCATTTCTGCATATGAAGCTGCGCGATTCAAGTTGCAAACTCCCAAAGGAAGATCAGTTGCGGATGTTGGGTGTGAACCAATTCTGCACATGAGGCACTTCCAGGCCTCTAAAAAACTTCCAGAGAAGCTTGTTTTCCAGATCTGTAATCCGTCCGGTAATGGAAAGTCGTTGTCAATAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006139 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0008987 GO:0009058 GO:0009060 GO:0009066 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009893 GO:0009987 GO:0015980 GO:0016043 GO:0016053 GO:0016226 GO:0017144 GO:0018130 GO:0019222 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0019805 GO:0022607 GO:0030234 GO:0031163 GO:0031323 GO:0031325 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042762 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046394 GO:0046483 GO:0046496 GO:0046874 GO:0046983 GO:0048037 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051176 GO:0051186 GO:0051188 GO:0051536 GO:0051539 GO:0051540 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0072524 GO:0072525 GO:0090407 GO:0098772 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

NadA SufE

Protein Analysis

600

Amino Acids

65.48

Weight (kDa)

6.07

Isoelectric Point (pI)

51.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufE	PF02657	2 - 84	3.2e-18	Fe-S metabolism associated domain
NadA	PF02445	136 - 442	5.6e-31	Quinolinate synthetase A protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50210
fragaria_vesca	FvH4_5g06430 FvH4_5g06430 FvH4_5g06430 FvH4_5g06430
malus_domestica	MD06G1164800.v1.1 MD14G1170100.v1.1
prunus_persica	Prupe.5G164300_v2.0.a1
pyrus_communis	pycom06g14740
rosa_chinensis	RchiOBHm_Chr7g0192351
rosa_laevigata	RLG00000004377
rosa_multiflora	Rmu_sc0003108.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263110
rosa_rugosa	Rorug07G0000600
rosa_samantha	Rh7BG126800 Rh7CG128400 Rh7DG128400
rosa_wichuraiana	Rw7G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	201
AccB1I	GGYRCC	1 cut(s)	133
AccI	GTMKAC	2 cut(s)	774, 1211
AccII	CGCG	2 cut(s)	65, 1642
AccIII	TCCGGA	1 cut(s)	382
AciI	CCGC	9 cut(s)	65, 68, 131, 152, 173, 290, 324, 539, 1679
AclWI	GGATC	3 cut(s)	455, 468, 619
AcsI	RAATTY	1 cut(s)	1561
AcuI	CTGAAG	3 cut(s)	1268, 1428, 1601
AcyI	GRCGYC	1 cut(s)	134
AfaI	GTAC	4 cut(s)	838, 905, 942, 1550
AfeI	AGCGCT	1 cut(s)	302
AfiI	CCNNNNNNNGG	8 cut(s)	21, 313, 330, 369, 520, 634, 1462, 1582
AgsI	TTSAA	9 cut(s)	421, 647, 747, 846, 1250, 1323, 1388, 1521, 1648
AhlI	ACTAGT	1 cut(s)	1333
AjnI	CCWGG	7 cut(s)	15, 42, 168, 363, 1150, 1492, 1719
AluBI	AGCT	9 cut(s)	263, 277, 351, 803, 817, 1572, 1637, 1747, 1800
AluI	AGCT	9 cut(s)	263, 277, 351, 803, 817, 1572, 1637, 1747, 1800
Alw26I	GTCTC	3 cut(s)	315, 1002, 1601
AlwI	GGATC	3 cut(s)	455, 468, 619
AlwNI	CAGNNNCTG	2 cut(s)	704, 1307
Ama87I	CYCGRG	1 cut(s)	734
Aor13HI	TCCGGA	1 cut(s)	382
Aor51HI	AGCGCT	1 cut(s)	302
AoxI	GGCC	6 cut(s)	12, 339, 503, 636, 1447, 1722
ApeKI	GCWGC	4 cut(s)	6, 488, 704, 1637
ApoI	RAATTY	1 cut(s)	1561
AseI	ATTAAT	1 cut(s)	780
Asp700I	GAANNNNTTC	1 cut(s)	1698
AspLEI	GCGC	5 cut(s)	136, 178, 202, 303, 1642
AspS9I	GGNCC	4 cut(s)	13, 40, 908, 1147
AsuC2I	CCSGG	1 cut(s)	195
AsuHPI	GGTGA	5 cut(s)	79, 313, 744, 1327, 1481
AvaI	CYCGRG	1 cut(s)	734
AvaII	GGWCC	3 cut(s)	40, 908, 1147
AxyI	CCTNAGG	1 cut(s)	465
BamHI	GGATCC	1 cut(s)	460
BanI	GGYRCC	1 cut(s)	133
BarI	GAAGNNNNNNTAC	2 cut(s)	1574, 1606
BauI	CACGAG	1 cut(s)	103
BbvI	GCAGC	3 cut(s)	500, 691, 1624
BccI	CCATC	5 cut(s)	31, 323, 550, 560, 1046
BceAI	ACGGC	3 cut(s)	27, 64, 277
BciT130I	CCWGG	7 cut(s)	17, 44, 170, 365, 1152, 1494, 1721
BclI	TGATCA	1 cut(s)	631
BcnI	CCSGG	1 cut(s)	195
BcoDI	GTCTC	3 cut(s)	315, 1002, 1601
BcuI	ACTAGT	1 cut(s)	1333
BfaI	CTAG	5 cut(s)	210, 1169, 1226, 1334, 1503
BfmI	CTRYAG	3 cut(s)	278, 486, 866
BfoI	RGCGCY	3 cut(s)	137, 179, 304
BglII	AGATCT	2 cut(s)	1019, 1758
BisI	GCNGC	8 cut(s)	7, 66, 132, 174, 290, 489, 705, 1638
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	8 cut(s)	8, 67, 133, 175, 291, 490, 706, 1639
BmcAI	AGTACT	1 cut(s)	942
Bme1390I	CCNGG	8 cut(s)	17, 44, 170, 195, 365, 1152, 1494, 1721
Bme18I	GGWCC	3 cut(s)	40, 908, 1147
BmeT110I	CYCGRG	1 cut(s)	734
BmgT120I	GGNCC	4 cut(s)	13, 40, 908, 1147
BmiI	GGNNCC	3 cut(s)	135, 462, 1149
BmrFI	CCNGG	8 cut(s)	17, 44, 170, 195, 365, 1152, 1494, 1721
BmsI	GCATC	7 cut(s)	560, 691, 716, 1048, 1078, 1111, 1547
BpmI	CTGGAG	3 cut(s)	47, 1173, 1515
Bpu10I	CCTNAGC	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	273
BpuEI	CTTGAG	2 cut(s)	864, 968
BpuMI	CCSGG	1 cut(s)	195
BsaAI	YACGTR	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	134
BsaJI	CCNNGG	4 cut(s)	15, 342, 363, 1150
BsaWI	WCCGGW	2 cut(s)	382, 1772
Bsc4I	CCNNNNNNNGG	8 cut(s)	21, 313, 330, 369, 520, 634, 1462, 1582
Bse118I	RCCGGY	1 cut(s)	638
Bse1I	ACTGG	2 cut(s)	795, 1400
Bse21I	CCTNAGG	1 cut(s)	465
Bse3DI	GCAATG	2 cut(s)	761, 1179
BseAI	TCCGGA	1 cut(s)	382
BseBI	CCWGG	7 cut(s)	17, 44, 170, 365, 1152, 1494, 1721
BseDI	CCNNGG	4 cut(s)	15, 342, 363, 1150
BseGI	GGATG	9 cut(s)	391, 510, 575, 672, 991, 1057, 1430, 1538, 1687
BseLI	CCNNNNNNNGG	8 cut(s)	21, 313, 330, 369, 520, 634, 1462, 1582
BseMI	GCAATG	2 cut(s)	761, 1179
BseMII	CTCAG	5 cut(s)	264, 456, 770, 975, 1582
BseNI	ACTGG	2 cut(s)	795, 1400
BseRI	GAGGAG	2 cut(s)	155, 1201
BseXI	GCAGC	3 cut(s)	500, 691, 1624
BsgI	GTGCAG	1 cut(s)	1688
Bsh1236I	CGCG	2 cut(s)	65, 1642
BshFI	GGCC	6 cut(s)	14, 341, 505, 638, 1449, 1724
BshNI	GGYRCC	1 cut(s)	133
BsiHKCI	CYCGRG	1 cut(s)	734
BsiSI	CCGG	5 cut(s)	137, 195, 383, 639, 1773
BslFI	GGGAC	2 cut(s)	1069, 1133
BslI	CCNNNNNNNGG	8 cut(s)	21, 313, 330, 369, 520, 634, 1462, 1582
BsmAI	GTCTC	3 cut(s)	315, 1002, 1601
BsmBI	CGTCTC	1 cut(s)	315
BsmFI	GGGAC	2 cut(s)	1069, 1133
BsmI	GAATGC	1 cut(s)	745
BsnI	GGCC	6 cut(s)	14, 341, 505, 638, 1449, 1724
BsoBI	CYCGRG	1 cut(s)	734
Bsp13I	TCCGGA	1 cut(s)	382
Bsp143I	GATC	8 cut(s)	84, 460, 624, 631, 1019, 1377, 1670, 1758
Bsp1720I	GCTNAGC	1 cut(s)	273
BspACI	CCGC	9 cut(s)	65, 68, 131, 152, 173, 290, 324, 539, 1679
BspANI	GGCC	6 cut(s)	14, 341, 505, 638, 1449, 1724
BspCNI	CTCAG	5 cut(s)	265, 457, 769, 976, 1581
BspEI	TCCGGA	1 cut(s)	382
BspFNI	CGCG	2 cut(s)	65, 1642
BspLI	GGNNCC	3 cut(s)	135, 462, 1149
BspMAI	CTGCAG	2 cut(s)	490, 870
BspPI	GGATC	3 cut(s)	455, 468, 619
BspT107I	GGYRCC	1 cut(s)	133
BsrDI	GCAATG	2 cut(s)	761, 1179
BsrFI	RCCGGY	1 cut(s)	638
BsrI	ACTGG	2 cut(s)	795, 1400
BssAI	RCCGGY	1 cut(s)	638
BssECI	CCNNGG	4 cut(s)	15, 342, 363, 1150
BssMI	GATC	8 cut(s)	84, 460, 624, 631, 1019, 1377, 1670, 1758
BssNI	GRCGYC	1 cut(s)	134
BssSI	CACGAG	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	103
Bst2UI	CCWGG	7 cut(s)	17, 44, 170, 365, 1152, 1494, 1721
Bst4CI	ACNGT	2 cut(s)	586, 908
BstACI	GRCGYC	1 cut(s)	134
BstAPI	GCANNNNNTGC	1 cut(s)	704
BstBAI	YACGTR	1 cut(s)	222
BstC8I	GCNNGC	3 cut(s)	640, 870, 1037
BstDEI	CTNAG	6 cut(s)	273, 393, 465, 756, 984, 1568
BstEII	GGTNACC	1 cut(s)	750
BstENI	CCTNNNNNAGG	2 cut(s)	632, 1580
BstF5I	GGATG	9 cut(s)	391, 510, 575, 672, 991, 1057, 1430, 1538, 1687
BstFNI	CGCG	2 cut(s)	65, 1642
BstH2I	RGCGCY	3 cut(s)	137, 179, 304
BstHHI	GCGC	5 cut(s)	136, 178, 202, 303, 1642
BstKTI	GATC	8 cut(s)	87, 463, 627, 634, 1022, 1380, 1673, 1761
BstMAI	GTCTC	3 cut(s)	315, 1002, 1601
BstMBI	GATC	8 cut(s)	84, 460, 624, 631, 1019, 1377, 1670, 1758
BstMWI	GCNNNNNNNGC	9 cut(s)	199, 269, 298, 545, 704, 1178, 1625, 1634, 1711
BstNI	CCWGG	7 cut(s)	17, 44, 170, 365, 1152, 1494, 1721
BstNSI	RCATGY	2 cut(s)	770, 1062
BstPI	GGTNACC	1 cut(s)	750
BstSCI	CCNGG	8 cut(s)	15, 42, 168, 193, 363, 1150, 1492, 1719
BstSFI	CTRYAG	3 cut(s)	278, 486, 866
BstUI	CGCG	2 cut(s)	65, 1642
BstV1I	GCAGC	3 cut(s)	500, 691, 1624
BstX2I	RGATCY	3 cut(s)	460, 1019, 1758
BstYI	RGATCY	3 cut(s)	460, 1019, 1758
Bsu36I	CCTNAGG	1 cut(s)	465
BsuRI	GGCC	6 cut(s)	14, 341, 505, 638, 1449, 1724
BtsCI	GGATG	9 cut(s)	391, 510, 575, 672, 991, 1057, 1430, 1538, 1687
BtsIMutI	CAGTG	1 cut(s)	788
Cac8I	GCNNGC	3 cut(s)	640, 870, 1037
CaiI	CAGNNNCTG	2 cut(s)	704, 1307
CfoI	GCGC	5 cut(s)	136, 178, 202, 303, 1642
Cfr10I	RCCGGY	1 cut(s)	638
Cfr13I	GGNCC	4 cut(s)	13, 40, 908, 1147
Csp6I	GTAC	4 cut(s)	837, 904, 941, 1549
CviAII	CATG	9 cut(s)	457, 535, 767, 812, 922, 1059, 1526, 1552, 1708
CviQI	GTAC	4 cut(s)	837, 904, 941, 1549
DdeI	CTNAG	6 cut(s)	273, 393, 465, 756, 984, 1568
DinI	GGCGCC	1 cut(s)	135
DpnI	GATC	8 cut(s)	86, 462, 626, 633, 1021, 1379, 1672, 1760
DpnII	GATC	8 cut(s)	84, 460, 624, 631, 1019, 1377, 1670, 1758
DraI	TTTAAA	1 cut(s)	894
EciI	GGCGGA	2 cut(s)	83, 554
Eco130I	CCWWGG	1 cut(s)	342
Eco147I	AGGCCT	2 cut(s)	1449, 1724
Eco47I	GGWCC	3 cut(s)	40, 908, 1147
Eco47III	AGCGCT	1 cut(s)	302
Eco57I	CTGAAG	3 cut(s)	1268, 1428, 1601
Eco81I	CCTNAGG	1 cut(s)	465
Eco88I	CYCGRG	1 cut(s)	734
Eco91I	GGTNACC	1 cut(s)	750
EcoNI	CCTNNNNNAGG	2 cut(s)	632, 1580
EcoO109I	RGGNCCY	1 cut(s)	1147
EcoO65I	GGTNACC	1 cut(s)	750
EcoRI	GAATTC	1 cut(s)	1561
EcoRII	CCWGG	7 cut(s)	15, 42, 168, 363, 1150, 1492, 1719
EcoT14I	CCWWGG	1 cut(s)	342
EcoT22I	ATGCAT	2 cut(s)	1064, 1126
EgeI	GGCGCC	1 cut(s)	135
EheI	GGCGCC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	315
FaeI	CATG	9 cut(s)	460, 538, 770, 815, 925, 1062, 1529, 1555, 1711
FaqI	GGGAC	2 cut(s)	1069, 1133
FatI	CATG	9 cut(s)	456, 534, 766, 811, 921, 1058, 1525, 1551, 1707
FauNDI	CATATG	1 cut(s)	1630
FbaI	TGATCA	1 cut(s)	631
FblI	GTMKAC	2 cut(s)	774, 1211
Fnu4HI	GCNGC	8 cut(s)	7, 66, 132, 174, 290, 489, 705, 1638
FokI	GGATG	9 cut(s)	398, 497, 582, 679, 978, 1064, 1417, 1525, 1694
Fsp4HI	GCNGC	8 cut(s)	7, 66, 132, 174, 290, 489, 705, 1638
FspBI	CTAG	5 cut(s)	210, 1169, 1226, 1334, 1503
FspI	TGCGCA	1 cut(s)	201
GlaI	GCGC	5 cut(s)	135, 177, 201, 302, 1641
GluI	GCNGC	8 cut(s)	7, 66, 132, 174, 290, 489, 705, 1638
GsuI	CTGGAG	3 cut(s)	47, 1173, 1515
HaeII	RGCGCY	3 cut(s)	137, 179, 304
HaeIII	GGCC	6 cut(s)	14, 341, 505, 638, 1449, 1724
HapII	CCGG	5 cut(s)	137, 195, 383, 639, 1773
HhaI	GCGC	5 cut(s)	136, 178, 202, 303, 1642
Hin1I	GRCGYC	1 cut(s)	134
Hin1II	CATG	9 cut(s)	460, 538, 770, 815, 925, 1062, 1529, 1555, 1711
Hin6I	GCGC	5 cut(s)	134, 176, 200, 301, 1640
HinP1I	GCGC	5 cut(s)	134, 176, 200, 301, 1640
HindIII	AAGCTT	3 cut(s)	261, 801, 1745
HinfI	GANTC	9 cut(s)	77, 334, 524, 542, 914, 1010, 1304, 1412, 1644
HpaII	CCGG	5 cut(s)	137, 195, 383, 639, 1773
HphI	GGTGA	5 cut(s)	79, 313, 744, 1327, 1481
Hpy166II	GTNNAC	5 cut(s)	661, 775, 1096, 1212, 1694
Hpy188I	TCNGA	5 cut(s)	82, 523, 610, 1019, 1411
Hpy8I	GTNNAC	5 cut(s)	661, 775, 1096, 1212, 1694
Hpy99I	CGWCG	2 cut(s)	128, 167
HpyAV	CCTTC	3 cut(s)	726, 1292, 1576
HpyCH4III	ACNGT	2 cut(s)	586, 908
HpyCH4IV	ACGT	2 cut(s)	221, 897
HpyF10VI	GCNNNNNNNGC	9 cut(s)	199, 269, 298, 545, 704, 1178, 1625, 1634, 1711
HpyF3I	CTNAG	6 cut(s)	273, 393, 465, 756, 984, 1568
HpySE526I	ACGT	2 cut(s)	221, 897
Hsp92I	GRCGYC	1 cut(s)	134
Hsp92II	CATG	9 cut(s)	460, 538, 770, 815, 925, 1062, 1529, 1555, 1711
HspAI	GCGC	5 cut(s)	134, 176, 200, 301, 1640
KasI	GGCGCC	1 cut(s)	133
Kpn2I	TCCGGA	1 cut(s)	382
KroI	GCCGGC	1 cut(s)	638
KroNI	GCCGGC	1 cut(s)	640
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	8 cut(s)	84, 460, 624, 631, 1019, 1377, 1670, 1758
LmnI	GCTCC	2 cut(s)	1370, 1577
Lsp1109I	GCAGC	3 cut(s)	500, 691, 1624
LweI	GCATC	7 cut(s)	560, 691, 716, 1048, 1078, 1111, 1547
MaeI	CTAG	5 cut(s)	210, 1169, 1226, 1334, 1503
MaeII	ACGT	2 cut(s)	221, 897
MaeIII	GTNAC	2 cut(s)	750, 1315
MalI	GATC	8 cut(s)	86, 462, 626, 633, 1021, 1379, 1672, 1760
MboI	GATC	8 cut(s)	84, 460, 624, 631, 1019, 1377, 1670, 1758
MfeI	CAATTG	1 cut(s)	1323
MflI	RGATCY	3 cut(s)	460, 1019, 1758
MluCI	AATT	9 cut(s)	681, 828, 978, 1323, 1389, 1435, 1521, 1561, 1698
Mly113I	GGCGCC	1 cut(s)	134
MlyI	GAGTC	3 cut(s)	908, 1004, 1406
Mph1103I	ATGCAT	2 cut(s)	1064, 1126
MroI	TCCGGA	1 cut(s)	382
MroNI	GCCGGC	1 cut(s)	638
MroXI	GAANNNNTTC	1 cut(s)	1698
MseI	TTAA	8 cut(s)	216, 266, 411, 552, 780, 893, 1452, 1461
MslI	CAYNNNNRTG	1 cut(s)	1556
MspI	CCGG	5 cut(s)	137, 195, 383, 639, 1773
MspR9I	CCNGG	8 cut(s)	17, 44, 170, 195, 365, 1152, 1494, 1721
MunI	CAATTG	1 cut(s)	1323
Mva1269I	GAATGC	1 cut(s)	745
MvaI	CCWGG	7 cut(s)	17, 44, 170, 365, 1152, 1494, 1721
MvnI	CGCG	2 cut(s)	65, 1642
MwoI	GCNNNNNNNGC	9 cut(s)	199, 269, 298, 545, 704, 1178, 1625, 1634, 1711
NaeI	GCCGGC	1 cut(s)	640
NarI	GGCGCC	1 cut(s)	134
NciI	CCSGG	1 cut(s)	195
NdeI	CATATG	1 cut(s)	1630
NdeII	GATC	8 cut(s)	84, 460, 624, 631, 1019, 1377, 1670, 1758
NgoMIV	GCCGGC	1 cut(s)	638
NlaIII	CATG	9 cut(s)	460, 538, 770, 815, 925, 1062, 1529, 1555, 1711
NlaIV	GGNNCC	3 cut(s)	135, 462, 1149
NmuCI	GTSAC	2 cut(s)	750, 1315
NsbI	TGCGCA	1 cut(s)	201
NsiI	ATGCAT	2 cut(s)	1064, 1126
NspI	RCATGY	2 cut(s)	770, 1062
PaeR7I	CTCGAG	1 cut(s)	734
PceI	AGGCCT	2 cut(s)	1449, 1724
PctI	GAATGC	1 cut(s)	745
PdiI	GCCGGC	1 cut(s)	640
PdmI	GAANNNNTTC	1 cut(s)	1698
PfeI	GAWTC	6 cut(s)	77, 334, 524, 542, 1304, 1644
PkrI	GCNGC	8 cut(s)	8, 67, 133, 175, 291, 490, 706, 1639
PleI	GAGTC	3 cut(s)	908, 1004, 1406
PluTI	GGCGCC	1 cut(s)	137
PpsI	GAGTC	3 cut(s)	908, 1004, 1406
Ppu21I	YACGTR	1 cut(s)	222
PpuMI	RGGWCCY	1 cut(s)	1147
PshBI	ATTAAT	1 cut(s)	780
Psp5II	RGGWCCY	1 cut(s)	1147
Psp6I	CCWGG	7 cut(s)	15, 42, 168, 363, 1150, 1492, 1719
PspEI	GGTNACC	1 cut(s)	750
PspGI	CCWGG	7 cut(s)	15, 42, 168, 363, 1150, 1492, 1719
PspN4I	GGNNCC	3 cut(s)	135, 462, 1149
PspPI	GGNCC	4 cut(s)	13, 40, 908, 1147
PspPPI	RGGWCCY	1 cut(s)	1147
PstI	CTGCAG	2 cut(s)	490, 870
PstNI	CAGNNNCTG	2 cut(s)	704, 1307
PsuI	RGATCY	3 cut(s)	460, 1019, 1758
RsaI	GTAC	4 cut(s)	838, 905, 942, 1550
RsaNI	GTAC	4 cut(s)	837, 904, 941, 1549
RseI	CAYNNNNRTG	1 cut(s)	1556
SaqAI	TTAA	8 cut(s)	216, 266, 411, 552, 780, 893, 1452, 1461
SatI	GCNGC	8 cut(s)	7, 66, 132, 174, 290, 489, 705, 1638
Sau3AI	GATC	8 cut(s)	84, 460, 624, 631, 1019, 1377, 1670, 1758
Sau96I	GGNCC	4 cut(s)	13, 40, 908, 1147
ScaI	AGTACT	1 cut(s)	942
SchI	GAGTC	3 cut(s)	908, 1004, 1406
ScrFI	CCNGG	8 cut(s)	17, 44, 170, 195, 365, 1152, 1494, 1721
SfaNI	GCATC	7 cut(s)	560, 691, 716, 1048, 1078, 1111, 1547
SfcI	CTRYAG	3 cut(s)	278, 486, 866
SfoI	GGCGCC	1 cut(s)	135
Sfr274I	CTCGAG	1 cut(s)	734
SinI	GGWCC	3 cut(s)	40, 908, 1147
SlaI	CTCGAG	1 cut(s)	734
SmiMI	CAYNNNNRTG	1 cut(s)	1556
SmlI	CTYRAG	3 cut(s)	734, 879, 947
SmoI	CTYRAG	3 cut(s)	734, 879, 947
SpeI	ACTAGT	1 cut(s)	1333
Sse9I	AATT	9 cut(s)	681, 828, 978, 1323, 1389, 1435, 1521, 1561, 1698
SseBI	AGGCCT	2 cut(s)	1449, 1724
SsiI	CCGC	9 cut(s)	65, 68, 131, 152, 173, 290, 324, 539, 1679
SspDI	GGCGCC	1 cut(s)	133
SspI	AATATT	1 cut(s)	934
SspMI	CTAG	5 cut(s)	210, 1169, 1226, 1334, 1503
StuI	AGGCCT	2 cut(s)	1449, 1724
StyD4I	CCNGG	8 cut(s)	15, 42, 168, 193, 363, 1150, 1492, 1719
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	2 cut(s)	586, 908
TaiI	ACGT	2 cut(s)	224, 900
TaqI	TCGA	6 cut(s)	123, 297, 735, 1143, 1260, 1415
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	9 cut(s)	681, 828, 978, 1323, 1389, 1435, 1521, 1561, 1698
TatI	WGTACW	2 cut(s)	836, 940
TauI	GCSGC	4 cut(s)	68, 134, 176, 292
TfiI	GAWTC	6 cut(s)	77, 334, 524, 542, 1304, 1644
Tru1I	TTAA	8 cut(s)	216, 266, 411, 552, 780, 893, 1452, 1461
Tru9I	TTAA	8 cut(s)	216, 266, 411, 552, 780, 893, 1452, 1461
TscAI	CASTG	1 cut(s)	795
TseFI	GTSAC	2 cut(s)	750, 1315
TseI	GCWGC	4 cut(s)	6, 488, 704, 1637
Tsp45I	GTSAC	2 cut(s)	750, 1315
TspGWI	ACGGA	3 cut(s)	106, 1536, 1758
TspRI	CASTG	1 cut(s)	795
VpaK11BI	GGWCC	3 cut(s)	40, 908, 1147
VspI	ATTAAT	1 cut(s)	780
XagI	CCTNNNNNAGG	2 cut(s)	632, 1580
XapI	RAATTY	1 cut(s)	1561
XbaI	TCTAGA	1 cut(s)	1225
XceI	RCATGY	2 cut(s)	770, 1062
XhoI	CTCGAG	1 cut(s)	734
XmiI	GTMKAC	2 cut(s)	774, 1211
XmnI	GAANNNNTTC	1 cut(s)	1698
XspI	CTAG	5 cut(s)	210, 1169, 1226, 1334, 1503
ZrmI	AGTACT	1 cut(s)	942
Zsp2I	ATGCAT	2 cut(s)	1064, 1126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.