Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0013570

Physical Location & Seq

Genomic Coordinates Forward (+)

9974772 .. 9978451

Gene Structure 3680 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G010710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGCGGATTCGGCTGTGAAGATGGCGAAAGATGGATGCGAGTTTATTACAGTTTTGGGTGTTGATTTTATGTCTGAAAATGTCAGGGCGATCCTTGATCAGGCCGGCTTTCAAAAGGTCGGTGTTTACAGGATGTCAAATGAACGAATTGGTTGTTCTTTGGCAGATGCTGCATCTTCCCCTTCTTATATGAGTTATCTCGAGAATGCTTCAAGGTCACCTCAGTCATTGCATGTTGTCTACATTAATACAGCACTGGAAACAAAAGCTTATGCACATGAGCTTGTGCCAACAATTACCTGTACTTCTTCAAATGTTGTCCAAACCATTCTGCAGGCTTTTTCTCAAGTGCCAGATTTAAACGTATGGTACGGTCCTGACTCTTACATGGGTGCAAATATTAGAGTATTACTTGAGCAGATGACAAAGATGACAGATGAAGAAATTGCTGAGATACATCCAGCACACAATAGAGACTCAATCAGATCTCTGCTACCTCGCCTGCATCATTATCAGGATGGGACATGCATAGTGCATCATTTGTTTGGAAATGAGGTTGTGAACAGGATAAATGAAATGTATTGTGATGCATTTCTAACTGCTCATTTCGAGGTCCCTGGAGAAATGTTTGCTCTGGCAATGGAAGCAAAGAGGAGAGGAATGGGAGTTGTGGGGTCTACCCAAAACATTCTAGATTTCATAAAACAGAGGGTTCAAGAGGCTTTAGACAGAAATGTCAATGACCACCTTCAGTTCATATTAGGAACAGAATCTGGAATGGTGACTTCAATTGTGGCACTAGTTCGCAGTTTGTTAGGTTCTGCAAAGTCAGGGGGAGCGAAGATCAATGTTGAAATTGTATTTCCAGTTTCATCAGACTCAATGACAAGTACATCATCCAATTCTTCTTCAGGCCTTAACCCTATTAAGGTGGGTGATGTCATACTACCTGTTATACCTGGAGTGGCTAGTGGGGAGGGGTGTTCAATTCATGGTGGGTGTGCATCCTGTCCGTACATGAAGATGAATTCTCTCAGCTCCCTCCTGAAGGTTTGCTACCACCTACCTGATGAGACTGACAACGCCATTTCTGCATATGAAGCTGCACGATTCAAGTTGCAAACTCCCAATGGAAGATCAGTTGCGGATGTTGGGTGTGAACCAATTCTGCACATGAGGCACTTCCAGGCCTCTAAAAAACTTCCAGAGAAGCTTGTTTTCCAGATCTGTAATCCGTCGGTAATGGATAGTCGTTGTCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006139 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0008987 GO:0009058 GO:0009060 GO:0009066 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009893 GO:0009987 GO:0015980 GO:0016043 GO:0016053 GO:0016226 GO:0017144 GO:0018130 GO:0019222 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0019805 GO:0022607 GO:0030234 GO:0031163 GO:0031323 GO:0031325 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042762 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046394 GO:0046483 GO:0046496 GO:0046874 GO:0046983 GO:0048037 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051176 GO:0051186 GO:0051188 GO:0051536 GO:0051539 GO:0051540 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0072524 GO:0072525 GO:0090407 GO:0098772 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

NadA SufE

Protein Analysis

420

Amino Acids

45.86

Weight (kDa)

5.87

Isoelectric Point (pI)

50.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NadA	PF02445	7 - 264	7.2e-24	Quinolinate synthetase A protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50210
fragaria_vesca	FvH4_5g06430 FvH4_5g06430 FvH4_5g06430 FvH4_5g06430
malus_domestica	MD06G1164800.v1.1 MD14G1170100.v1.1
prunus_persica	Prupe.5G164300_v2.0.a1
pyrus_communis	pycom06g14740
rosa_chinensis	RchiOBHm_Chr7g0192351
rosa_laevigata	RLG00000004377
rosa_multiflora	Rmu_sc0003108.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263110
rosa_rugosa	Rorug07G0000600
rosa_samantha	Rh7BG126800 Rh7CG128400 Rh7DG128400
rosa_wichuraiana	Rw7G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	734
AccI	GTMKAC	2 cut(s)	240, 677
AciI	CCGC	2 cut(s)	5, 1145
AclWI	GGATC	1 cut(s)	85
AcsI	RAATTY	1 cut(s)	1027
AcuI	CTGAAG	3 cut(s)	734, 894, 1067
AfaI	GTAC	4 cut(s)	304, 371, 892, 1016
AfiI	CCNNNNNNNGG	3 cut(s)	100, 928, 1048
AgsI	TTSAA	8 cut(s)	113, 213, 312, 716, 789, 854, 987, 1114
AhlI	ACTAGT	1 cut(s)	799
AjnI	CCWGG	3 cut(s)	616, 958, 1185
AluBI	AGCT	5 cut(s)	269, 283, 1038, 1103, 1213
AluI	AGCT	5 cut(s)	269, 283, 1038, 1103, 1213
Alw26I	GTCTC	2 cut(s)	468, 1067
AlwI	GGATC	1 cut(s)	85
AlwNI	CAGNNNCTG	2 cut(s)	170, 773
Ama87I	CYCGRG	1 cut(s)	200
AoxI	GGCC	3 cut(s)	102, 913, 1188
ApeKI	GCWGC	2 cut(s)	170, 1103
ApoI	RAATTY	1 cut(s)	1027
AseI	ATTAAT	1 cut(s)	246
Asp700I	GAANNNNTTC	1 cut(s)	1164
AspS9I	GGNCC	2 cut(s)	374, 613
AsuHPI	GGTGA	3 cut(s)	210, 793, 947
AvaI	CYCGRG	1 cut(s)	200
AvaII	GGWCC	2 cut(s)	374, 613
BarI	GAAGNNNNNNTAC	2 cut(s)	1040, 1072
BbvI	GCAGC	2 cut(s)	157, 1090
BccI	CCATC	3 cut(s)	16, 26, 512
BciT130I	CCWGG	3 cut(s)	618, 960, 1187
BclI	TGATCA	1 cut(s)	97
BcoDI	GTCTC	2 cut(s)	468, 1067
BcuI	ACTAGT	1 cut(s)	799
BfaI	CTAG	3 cut(s)	692, 800, 969
BfmI	CTRYAG	1 cut(s)	332
BglII	AGATCT	2 cut(s)	485, 1224
BisI	GCNGC	2 cut(s)	171, 1104
BlsI	GCNGC	2 cut(s)	172, 1105
Bme1390I	CCNGG	3 cut(s)	618, 960, 1187
Bme18I	GGWCC	2 cut(s)	374, 613
BmeT110I	CYCGRG	1 cut(s)	200
BmgT120I	GGNCC	2 cut(s)	374, 613
BmiI	GGNNCC	1 cut(s)	615
BmrFI	CCNGG	3 cut(s)	618, 960, 1187
BmsI	GCATC	7 cut(s)	26, 157, 182, 514, 544, 577, 1013
BpmI	CTGGAG	2 cut(s)	639, 981
BpuEI	CTTGAG	2 cut(s)	330, 434
BsaJI	CCNNGG	1 cut(s)	616
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 928, 1048
Bse118I	RCCGGY	1 cut(s)	104
Bse1I	ACTGG	2 cut(s)	261, 866
Bse3DI	GCAATG	2 cut(s)	227, 645
BseBI	CCWGG	3 cut(s)	618, 960, 1187
BseDI	CCNNGG	1 cut(s)	616
BseGI	GGATG	7 cut(s)	41, 138, 457, 523, 896, 1004, 1153
BseLI	CCNNNNNNNGG	3 cut(s)	100, 928, 1048
BseMI	GCAATG	2 cut(s)	227, 645
BseMII	CTCAG	3 cut(s)	236, 441, 1048
BseNI	ACTGG	2 cut(s)	261, 866
BseRI	GAGGAG	1 cut(s)	667
BseXI	GCAGC	2 cut(s)	157, 1090
BsgI	GTGCAG	2 cut(s)	1089, 1154
BshFI	GGCC	3 cut(s)	104, 915, 1190
BsiHKCI	CYCGRG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	105
BslFI	GGGAC	2 cut(s)	535, 599
BslI	CCNNNNNNNGG	3 cut(s)	100, 928, 1048
BsmAI	GTCTC	2 cut(s)	468, 1067
BsmFI	GGGAC	2 cut(s)	535, 599
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	3 cut(s)	104, 915, 1190
BsoBI	CYCGRG	1 cut(s)	200
Bsp143I	GATC	6 cut(s)	90, 97, 485, 843, 1136, 1224
BspACI	CCGC	2 cut(s)	5, 1145
BspANI	GGCC	3 cut(s)	104, 915, 1190
BspCNI	CTCAG	3 cut(s)	235, 442, 1047
BspLI	GGNNCC	1 cut(s)	615
BspMAI	CTGCAG	1 cut(s)	336
BspPI	GGATC	1 cut(s)	85
BsrDI	GCAATG	2 cut(s)	227, 645
BsrFI	RCCGGY	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	261, 866
BssAI	RCCGGY	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	616
BssMI	GATC	6 cut(s)	90, 97, 485, 843, 1136, 1224
Bst2UI	CCWGG	3 cut(s)	618, 960, 1187
Bst4CI	ACNGT	2 cut(s)	52, 374
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	106, 336, 503
BstDEI	CTNAG	3 cut(s)	222, 450, 1034
BstEII	GGTNACC	1 cut(s)	216
BstENI	CCTNNNNNAGG	2 cut(s)	98, 1046
BstF5I	GGATG	7 cut(s)	41, 138, 457, 523, 896, 1004, 1153
BstKTI	GATC	6 cut(s)	93, 100, 488, 846, 1139, 1227
BstMAI	GTCTC	2 cut(s)	468, 1067
BstMBI	GATC	6 cut(s)	90, 97, 485, 843, 1136, 1224
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 170, 644, 1091, 1100, 1177
BstNI	CCWGG	3 cut(s)	618, 960, 1187
BstNSI	RCATGY	2 cut(s)	236, 528
BstPI	GGTNACC	1 cut(s)	216
BstSCI	CCNGG	3 cut(s)	616, 958, 1185
BstSFI	CTRYAG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	157, 1090
BstX2I	RGATCY	2 cut(s)	485, 1224
BstYI	RGATCY	2 cut(s)	485, 1224
BsuRI	GGCC	3 cut(s)	104, 915, 1190
BtsCI	GGATG	7 cut(s)	41, 138, 457, 523, 896, 1004, 1153
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	3 cut(s)	106, 336, 503
CaiI	CAGNNNCTG	2 cut(s)	170, 773
Cfr10I	RCCGGY	1 cut(s)	104
Cfr13I	GGNCC	2 cut(s)	374, 613
Csp6I	GTAC	4 cut(s)	303, 370, 891, 1015
CviAII	CATG	7 cut(s)	233, 278, 388, 525, 992, 1018, 1174
CviQI	GTAC	4 cut(s)	303, 370, 891, 1015
DdeI	CTNAG	3 cut(s)	222, 450, 1034
DpnI	GATC	6 cut(s)	92, 99, 487, 845, 1138, 1226
DpnII	GATC	6 cut(s)	90, 97, 485, 843, 1136, 1224
DraI	TTTAAA	1 cut(s)	360
DrdI	GACNNNNNNGTC	1 cut(s)	734
DseDI	GACNNNNNNGTC	1 cut(s)	734
EciI	GGCGGA	1 cut(s)	20
Eco147I	AGGCCT	2 cut(s)	915, 1190
Eco47I	GGWCC	2 cut(s)	374, 613
Eco57I	CTGAAG	3 cut(s)	734, 894, 1067
Eco88I	CYCGRG	1 cut(s)	200
Eco91I	GGTNACC	1 cut(s)	216
EcoNI	CCTNNNNNAGG	2 cut(s)	98, 1046
EcoO109I	RGGNCCY	1 cut(s)	613
EcoO65I	GGTNACC	1 cut(s)	216
EcoRI	GAATTC	1 cut(s)	1027
EcoRII	CCWGG	3 cut(s)	616, 958, 1185
EcoT22I	ATGCAT	2 cut(s)	530, 592
FaeI	CATG	7 cut(s)	236, 281, 391, 528, 995, 1021, 1177
FaqI	GGGAC	2 cut(s)	535, 599
FatI	CATG	7 cut(s)	232, 277, 387, 524, 991, 1017, 1173
FauNDI	CATATG	1 cut(s)	1096
FbaI	TGATCA	1 cut(s)	97
FblI	GTMKAC	2 cut(s)	240, 677
Fnu4HI	GCNGC	2 cut(s)	171, 1104
FokI	GGATG	7 cut(s)	48, 145, 444, 530, 883, 991, 1160
Fsp4HI	GCNGC	2 cut(s)	171, 1104
FspBI	CTAG	3 cut(s)	692, 800, 969
GluI	GCNGC	2 cut(s)	171, 1104
GsuI	CTGGAG	2 cut(s)	639, 981
HaeIII	GGCC	3 cut(s)	104, 915, 1190
HapII	CCGG	1 cut(s)	105
Hin1II	CATG	7 cut(s)	236, 281, 391, 528, 995, 1021, 1177
HindIII	AAGCTT	2 cut(s)	267, 1211
HinfI	GANTC	6 cut(s)	8, 380, 476, 770, 878, 1110
HpaII	CCGG	1 cut(s)	105
HphI	GGTGA	3 cut(s)	210, 793, 947
Hpy166II	GTNNAC	5 cut(s)	127, 241, 562, 678, 1160
Hpy188I	TCNGA	3 cut(s)	76, 485, 877
Hpy8I	GTNNAC	5 cut(s)	127, 241, 562, 678, 1160
Hpy99I	CGWCG	1 cut(s)	1240
HpyAV	CCTTC	3 cut(s)	192, 758, 1042
HpyCH4III	ACNGT	2 cut(s)	52, 374
HpyCH4IV	ACGT	1 cut(s)	363
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 170, 644, 1091, 1100, 1177
HpyF3I	CTNAG	3 cut(s)	222, 450, 1034
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	7 cut(s)	236, 281, 391, 528, 995, 1021, 1177
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	6 cut(s)	90, 97, 485, 843, 1136, 1224
LmnI	GCTCC	2 cut(s)	836, 1043
Lsp1109I	GCAGC	2 cut(s)	157, 1090
LweI	GCATC	7 cut(s)	26, 157, 182, 514, 544, 577, 1013
MaeI	CTAG	3 cut(s)	692, 800, 969
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	2 cut(s)	216, 781
MalI	GATC	6 cut(s)	92, 99, 487, 845, 1138, 1226
MboI	GATC	6 cut(s)	90, 97, 485, 843, 1136, 1224
MboII	GAAGA	9 cut(s)	31, 168, 300, 452, 853, 897, 900, 1033, 1146
MfeI	CAATTG	1 cut(s)	789
MflI	RGATCY	2 cut(s)	485, 1224
MluCI	AATT	9 cut(s)	147, 294, 444, 789, 855, 901, 987, 1027, 1164
MlyI	GAGTC	3 cut(s)	374, 470, 872
Mph1103I	ATGCAT	2 cut(s)	530, 592
MroNI	GCCGGC	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	1164
MseI	TTAA	4 cut(s)	246, 359, 918, 927
MslI	CAYNNNNRTG	1 cut(s)	1022
MspI	CCGG	1 cut(s)	105
MspR9I	CCNGG	3 cut(s)	618, 960, 1187
MunI	CAATTG	1 cut(s)	789
Mva1269I	GAATGC	1 cut(s)	211
MvaI	CCWGG	3 cut(s)	618, 960, 1187
MwoI	GCNNNNNNNGC	6 cut(s)	11, 170, 644, 1091, 1100, 1177
NaeI	GCCGGC	1 cut(s)	106
NdeI	CATATG	1 cut(s)	1096
NdeII	GATC	6 cut(s)	90, 97, 485, 843, 1136, 1224
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	7 cut(s)	236, 281, 391, 528, 995, 1021, 1177
NlaIV	GGNNCC	1 cut(s)	615
NmuCI	GTSAC	2 cut(s)	216, 781
NsiI	ATGCAT	2 cut(s)	530, 592
NspI	RCATGY	2 cut(s)	236, 528
PaeR7I	CTCGAG	1 cut(s)	200
PceI	AGGCCT	2 cut(s)	915, 1190
PctI	GAATGC	1 cut(s)	211
PdiI	GCCGGC	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	1164
PfeI	GAWTC	3 cut(s)	8, 770, 1110
PkrI	GCNGC	2 cut(s)	172, 1105
PleI	GAGTC	3 cut(s)	374, 470, 872
PpsI	GAGTC	3 cut(s)	374, 470, 872
PpuMI	RGGWCCY	1 cut(s)	613
PshBI	ATTAAT	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	613
Psp6I	CCWGG	3 cut(s)	616, 958, 1185
PspEI	GGTNACC	1 cut(s)	216
PspGI	CCWGG	3 cut(s)	616, 958, 1185
PspN4I	GGNNCC	1 cut(s)	615
PspPI	GGNCC	2 cut(s)	374, 613
PspPPI	RGGWCCY	1 cut(s)	613
PstI	CTGCAG	1 cut(s)	336
PstNI	CAGNNNCTG	2 cut(s)	170, 773
PsuI	RGATCY	2 cut(s)	485, 1224
RsaI	GTAC	4 cut(s)	304, 371, 892, 1016
RsaNI	GTAC	4 cut(s)	303, 370, 891, 1015
RseI	CAYNNNNRTG	1 cut(s)	1022
SaqAI	TTAA	4 cut(s)	246, 359, 918, 927
SatI	GCNGC	2 cut(s)	171, 1104
Sau3AI	GATC	6 cut(s)	90, 97, 485, 843, 1136, 1224
Sau96I	GGNCC	2 cut(s)	374, 613
SchI	GAGTC	3 cut(s)	374, 470, 872
ScrFI	CCNGG	3 cut(s)	618, 960, 1187
SfaNI	GCATC	7 cut(s)	26, 157, 182, 514, 544, 577, 1013
SfcI	CTRYAG	1 cut(s)	332
Sfr274I	CTCGAG	1 cut(s)	200
SinI	GGWCC	2 cut(s)	374, 613
SlaI	CTCGAG	1 cut(s)	200
SmiMI	CAYNNNNRTG	1 cut(s)	1022
SmlI	CTYRAG	3 cut(s)	200, 345, 413
SmoI	CTYRAG	3 cut(s)	200, 345, 413
SpeI	ACTAGT	1 cut(s)	799
Sse9I	AATT	9 cut(s)	147, 294, 444, 789, 855, 901, 987, 1027, 1164
SseBI	AGGCCT	2 cut(s)	915, 1190
SsiI	CCGC	2 cut(s)	5, 1145
SspI	AATATT	1 cut(s)	400
SspMI	CTAG	3 cut(s)	692, 800, 969
StuI	AGGCCT	2 cut(s)	915, 1190
StyD4I	CCNGG	3 cut(s)	616, 958, 1185
TaaI	ACNGT	2 cut(s)	52, 374
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	2 cut(s)	201, 609
TasI	AATT	9 cut(s)	147, 294, 444, 789, 855, 901, 987, 1027, 1164
TatI	WGTACW	2 cut(s)	302, 890
TfiI	GAWTC	3 cut(s)	8, 770, 1110
Tru1I	TTAA	4 cut(s)	246, 359, 918, 927
Tru9I	TTAA	4 cut(s)	246, 359, 918, 927
TscAI	CASTG	1 cut(s)	261
TseFI	GTSAC	2 cut(s)	216, 781
TseI	GCWGC	2 cut(s)	170, 1103
Tsp45I	GTSAC	2 cut(s)	216, 781
TspGWI	ACGGA	2 cut(s)	1002, 1224
TspRI	CASTG	1 cut(s)	261
VpaK11BI	GGWCC	2 cut(s)	374, 613
VspI	ATTAAT	1 cut(s)	246
XagI	CCTNNNNNAGG	2 cut(s)	98, 1046
XapI	RAATTY	1 cut(s)	1027
XbaI	TCTAGA	1 cut(s)	691
XceI	RCATGY	2 cut(s)	236, 528
XhoI	CTCGAG	1 cut(s)	200
XmiI	GTMKAC	2 cut(s)	240, 677
XmnI	GAANNNNTTC	1 cut(s)	1164
XspI	CTAG	3 cut(s)	692, 800, 969
Zsp2I	ATGCAT	2 cut(s)	530, 592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.