Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013570

Physical Location & Seq

Genomic Coordinates Reverse (-)

58864665 .. 58867991

Gene Structure 3327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004377

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2214 bp

ATGGAGTCTCCTGCAACCACCATGGCTTTGAGAGCCACCTCTTCTTCTTCCTCTTCCTCTTCATCCTCCTCCTCCTTCTTCTCCATTCCCCCAACCCAAAAGCCCCAGTCTTTGCCTTTCAAGCTCCATCCTTTTCGCTTTAAGAGGCACCAATCCCTAAAATGCATCCAATCCCCACCGTCCGATCCCAACCCGCTCTCACAGACCACCCCCAAAAACCCTACCTTCTCCTGCTCCGCCGCCACCCTCTCCCCCTCTCCCACCGCCGACCTCGCTCCCTCCAAGCTCCACCTCCTCGTCTCCGAGTTCCAGTCCCTCACGGAGCCGATCGACCGTGTCAAGCGGCTGCTGCACTACGCTAGCCTCCTCCCGCCGCTCCCCGATTCGGGTCGGGTCGACGCCAACCGGGTCATGGGCTGCACGGCCCAGGTCTGGCTGGAGGCGAAGATGGACCGGGACGGCAAGATGAGGTTCGAGGCGGACAGCGATTCCGAGATCACCAGAGGGTTCTGCTCGTGTTTGGTGTCCGTTCTCGACGGGGCGGCGCCGGAGGAGGTCTTGGCGGTCAAGACCGACGACCTGGCGGCCCTCAATGTTGGGTTGCCCGGTGCGCAGAGGTCTAGGGTTAATACTTGGCATAATGTGTTGGTCAGTATGCACAAAAAGACTAAAGCTTTAATGGCTGAGCTACAGGGGAAGCCGCCGTTCGAGCGCTTCCCGTCTCTGGTCATCACCGCCGATGGGATTCAGGCCAAGGGTAGCTACGCCGAAGCCCAGGCAAGGTATTTGTTTCCGGATGAGGCTAAGGTTGAGGAACTTGTTAATGTGTTGAAAGAGAAGAAGATTGGGGTGGTTGCTCATTTTTACATGGATCCTGAGGTTCAGGGTATTTTGACTGCAGCAAAGAAGGATTGGCCTCACATCCACATTTCGGATTCCTTGGTCATGGCGGATTCGGCTGTTAAGATGGCGACAGATGGATGCGAGTTTATTACAGTTTTGGGTGTTGATTTTATGTCTGAAAATGTCAGGGCGATCCTTGATCAGGCCGGCTTTCAAAAGGTCGGTGTTTACAGGATGTCAAATGAACGAATTGGTTGTTCTTTGGCAGATGCTGCATCTTCCCTTTCTTATATGAGTTATCTCGAGAATGCTTCAAGGTCACCTCAGTCATTGCATGTTGTCTACATTAATACATCACTGGAAACAAAAGCTTATGCACATGAGCTTGTGCCAACAATTACCTGTACTTCTTCAAATGTTGTCCAAACCATTCTGCAGGCTTTTTCTCAAGTGCCAGATTTAAACGTATGGTACGGTCCTGACTCTTACATGGGTGCAAATATTAGAGTATTACTTGAGCAGATGACAAAGATGACAGATGAAGAAATTGCTGAGATACATCCAGCACACAATAGAGATTCAATCAGATCTCTGCTACCTCGCCTGCATCATTATCAGGATGGGACATGCATAGTGCATCATTTGTTTGGAAATGAGGTTGTGAACAGGATAAATGAAATGTATTGTGATGCATTTCTAACTGCTCATTTCGAGGTCCCTGGAGAAATGTTTGCTCTGGCAATGGAAGCAAAGAGGAGAGGAATGGGAGTTGTGGGGTCTACCCAAAACATTCTAGATTTCATAAAACAGAGGGTTCAAGAGGCTTTAGACAGAGATGTCAATGACCACCTTCAGTTCGTATTAGGAACAGAATCTGGAATGGTGACTTCAATTGTTGCACTAGTTCGCAGTTTGTTAGGTTCTGCAAAGTCAGGGGGAGCAAAGATCAATGTTGAAATTGTATTTCCAGTTTCATCAGACTCAATGACAAGCACATCATCCAATTCTTCTTCAGGCCTTAACCCTATTCAGGTGGGTGATGTCATACTACCTGTTATACCTGGAGTGGCTAGTGGGGAGGGGTGTTCAATTCATGGTGGGTGTGCATCCTGTCCGTACATGAAGATGAATTCTCTCAGCTCCCTCCTGAAGGTTTGCTACCACCTACCTGATGAGACTGACAACGCCATTTCTGCATATGAAGCTGCTAGATTCAAGTTGCAAACTCCCAATGGAAGATCAGTTGCGGATGTTGGGTGTGAACCAATTCTGCACATGAGGCACTTCCAGGCCTCTAAAAAACTTCCAGAGAAGCTTGTTTTCCAGATCTGTAATCCGTCCGGTAATGGTAAGTCGTTGTCAATAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006139 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0008987 GO:0009058 GO:0009060 GO:0009066 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009893 GO:0009987 GO:0015980 GO:0016043 GO:0016053 GO:0016226 GO:0017144 GO:0018130 GO:0019222 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0019805 GO:0022607 GO:0030234 GO:0031163 GO:0031323 GO:0031325 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042762 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046394 GO:0046483 GO:0046496 GO:0046874 GO:0046983 GO:0048037 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051176 GO:0051186 GO:0051188 GO:0051536 GO:0051539 GO:0051540 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0072524 GO:0072525 GO:0090407 GO:0098772 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

NadA SufE

Protein Analysis

738

Amino Acids

80.27

Weight (kDa)

6.23

Isoelectric Point (pI)

55.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufE	PF02657	101 - 221	4.7e-30	Fe-S metabolism associated domain
NadA	PF02445	273 - 579	2.9e-30	Quinolinate synthetase A protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50210
fragaria_vesca	FvH4_5g06430 FvH4_5g06430 FvH4_5g06430 FvH4_5g06430
malus_domestica	MD06G1164800.v1.1 MD14G1170100.v1.1
prunus_persica	Prupe.5G164300_v2.0.a1
pyrus_communis	pycom06g14740
rosa_chinensis	RchiOBHm_Chr7g0192351
rosa_laevigata	RLG00000004377
rosa_multiflora	Rmu_sc0003108.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263110
rosa_rugosa	Rorug07G0000600
rosa_samantha	Rh7BG126800 Rh7CG128400 Rh7DG128400
rosa_wichuraiana	Rw7G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1679
Acc16I	TGCGCA	1 cut(s)	612
AccB1I	GGYRCC	2 cut(s)	147, 544
AccBSI	CCGCTC	2 cut(s)	196, 376
AccI	GTMKAC	3 cut(s)	396, 1185, 1622
AccIII	TCCGGA	1 cut(s)	793
AclWI	GGATC	4 cut(s)	179, 866, 879, 1030
AcsI	RAATTY	1 cut(s)	1972
AcuI	CTGAAG	3 cut(s)	1679, 1839, 2012
AcyI	GRCGYC	2 cut(s)	399, 545
AfaI	GTAC	3 cut(s)	1249, 1316, 1961
AfeI	AGCGCT	1 cut(s)	713
AhlI	ACTAGT	1 cut(s)	1744
AjnI	CCWGG	6 cut(s)	426, 579, 774, 1561, 1903, 2130
Alw26I	GTCTC	4 cut(s)	12, 304, 726, 2012
AlwI	GGATC	4 cut(s)	179, 866, 879, 1030
AlwNI	CAGNNNCTG	2 cut(s)	1115, 1718
Ama87I	CYCGRG	1 cut(s)	1145
Aor13HI	TCCGGA	1 cut(s)	793
Aor51HI	AGCGCT	1 cut(s)	713
AoxI	GGCC	7 cut(s)	423, 585, 750, 914, 1047, 1858, 2133
ApeKI	GCWGC	6 cut(s)	346, 349, 417, 899, 1115, 2048
ApoI	RAATTY	1 cut(s)	1972
AseI	ATTAAT	1 cut(s)	1191
Asp700I	GAANNNNTTC	1 cut(s)	2109
AspLEI	GCGC	3 cut(s)	547, 613, 714
AspS9I	GGNCC	5 cut(s)	424, 451, 586, 1319, 1558
AsuC2I	CCSGG	3 cut(s)	407, 455, 606
AsuHPI	GGTGA	5 cut(s)	490, 724, 1155, 1738, 1892
AsuNHI	GCTAGC	1 cut(s)	359
AvaI	CYCGRG	1 cut(s)	1145
AvaII	GGWCC	3 cut(s)	451, 1319, 1558
AxyI	CCTNAGG	1 cut(s)	876
BamHI	GGATCC	1 cut(s)	871
BanI	GGYRCC	2 cut(s)	147, 544
BarI	GAAGNNNNNNTAC	2 cut(s)	1985, 2017
BauI	CACGAG	1 cut(s)	514
BbvI	GCAGC	6 cut(s)	333, 336, 404, 911, 1102, 2035
BccI	CCATC	6 cut(s)	135, 442, 734, 961, 971, 1457
BceAI	ACGGC	3 cut(s)	438, 475, 688
BciT130I	CCWGG	6 cut(s)	428, 581, 776, 1563, 1905, 2132
BclI	TGATCA	1 cut(s)	1042
BcnI	CCSGG	3 cut(s)	407, 455, 606
BcoDI	GTCTC	4 cut(s)	12, 304, 726, 2012
BcuI	ACTAGT	1 cut(s)	1744
BfaI	CTAG	6 cut(s)	360, 621, 1637, 1745, 1914, 2052
BfmI	CTRYAG	3 cut(s)	689, 897, 1277
BfoI	RGCGCY	2 cut(s)	548, 715
BglII	AGATCT	2 cut(s)	1430, 2169
BlpI	GCTNAGC	1 cut(s)	684
Bme1390I	CCNGG	9 cut(s)	407, 428, 455, 581, 606, 776, 1563, 1905, 2132
Bme18I	GGWCC	3 cut(s)	451, 1319, 1558
BmeT110I	CYCGRG	1 cut(s)	1145
BmgT120I	GGNCC	5 cut(s)	424, 451, 586, 1319, 1558
BmiI	GGNNCC	5 cut(s)	149, 324, 546, 873, 1560
BmrFI	CCNGG	9 cut(s)	407, 428, 455, 581, 606, 776, 1563, 1905, 2132
BmrI	ACTGGG	1 cut(s)	100
BmsI	GCATC	8 cut(s)	174, 971, 1102, 1127, 1459, 1489, 1522, 1958
BmtI	GCTAGC	1 cut(s)	363
BmuI	ACTGGG	1 cut(s)	100
BpmI	CTGGAG	3 cut(s)	458, 1584, 1926
Bpu10I	CCTNAGC	1 cut(s)	804
Bpu1102I	GCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	2 cut(s)	1275, 1379
BpuMI	CCSGG	3 cut(s)	407, 455, 606
BsaHI	GRCGYC	2 cut(s)	399, 545
BsaJI	CCNNGG	6 cut(s)	21, 426, 753, 774, 939, 1561
BsaWI	WCCGGW	2 cut(s)	793, 2183
Bse118I	RCCGGY	1 cut(s)	1049
Bse1I	ACTGG	4 cut(s)	106, 310, 1206, 1811
Bse21I	CCTNAGG	1 cut(s)	876
Bse3DI	GCAATG	2 cut(s)	1172, 1590
BseAI	TCCGGA	1 cut(s)	793
BseBI	CCWGG	6 cut(s)	428, 581, 776, 1563, 1905, 2132
BseDI	CCNNGG	6 cut(s)	21, 426, 753, 774, 939, 1561
BseMI	GCAATG	2 cut(s)	1172, 1590
BseMII	CTCAG	5 cut(s)	675, 867, 1181, 1386, 1993
BseNI	ACTGG	4 cut(s)	106, 310, 1206, 1811
BseRI	GAGGAG	6 cut(s)	58, 61, 284, 356, 566, 1612
BseXI	GCAGC	6 cut(s)	333, 336, 404, 911, 1102, 2035
BsgI	GTGCAG	3 cut(s)	335, 403, 2099
Bsh1285I	CGRYCG	2 cut(s)	330, 334
BshFI	GGCC	7 cut(s)	425, 587, 752, 916, 1049, 1860, 2135
BshNI	GGYRCC	2 cut(s)	147, 544
BsiEI	CGRYCG	2 cut(s)	330, 334
BsiHKCI	CYCGRG	1 cut(s)	1145
BsiSI	CCGG	7 cut(s)	406, 454, 548, 606, 794, 1050, 2184
BslFI	GGGAC	4 cut(s)	298, 470, 1480, 1544
BsmAI	GTCTC	4 cut(s)	12, 304, 726, 2012
BsmBI	CGTCTC	2 cut(s)	304, 726
BsmFI	GGGAC	4 cut(s)	298, 470, 1480, 1544
BsmI	GAATGC	1 cut(s)	1156
BsnI	GGCC	7 cut(s)	425, 587, 752, 916, 1049, 1860, 2135
BsoBI	CYCGRG	1 cut(s)	1145
Bsp13I	TCCGGA	1 cut(s)	793
Bsp1720I	GCTNAGC	1 cut(s)	684
Bsp19I	CCATGG	1 cut(s)	21
BspANI	GGCC	7 cut(s)	425, 587, 752, 916, 1049, 1860, 2135
BspCNI	CTCAG	5 cut(s)	676, 868, 1180, 1387, 1992
BspEI	TCCGGA	1 cut(s)	793
BspLI	GGNNCC	5 cut(s)	149, 324, 546, 873, 1560
BspMAI	CTGCAG	2 cut(s)	901, 1281
BspOI	GCTAGC	1 cut(s)	363
BspPI	GGATC	4 cut(s)	179, 866, 879, 1030
BspT107I	GGYRCC	2 cut(s)	147, 544
BsrBI	CCGCTC	2 cut(s)	196, 376
BsrDI	GCAATG	2 cut(s)	1172, 1590
BsrFI	RCCGGY	1 cut(s)	1049
BsrI	ACTGG	4 cut(s)	106, 310, 1206, 1811
BssAI	RCCGGY	1 cut(s)	1049
BssECI	CCNNGG	6 cut(s)	21, 426, 753, 774, 939, 1561
BssNI	GRCGYC	2 cut(s)	399, 545
BssSI	CACGAG	1 cut(s)	514
BssT1I	CCWWGG	3 cut(s)	21, 753, 939
Bst2BI	CACGAG	1 cut(s)	514
Bst2UI	CCWGG	6 cut(s)	428, 581, 776, 1563, 1905, 2132
Bst4CI	ACNGT	4 cut(s)	180, 335, 997, 1319
Bst6I	CTCTTC	3 cut(s)	46, 58, 64
BstACI	GRCGYC	2 cut(s)	399, 545
BstAPI	GCANNNNNTGC	1 cut(s)	1115
BstC8I	GCNNGC	4 cut(s)	361, 1051, 1281, 1448
BstDEI	CTNAG	6 cut(s)	684, 804, 876, 1167, 1395, 1979
BstDSI	CCRYGG	1 cut(s)	21
BstEII	GGTNACC	1 cut(s)	1161
BstENI	CCTNNNNNAGG	2 cut(s)	1043, 1991
BstH2I	RGCGCY	2 cut(s)	548, 715
BstHHI	GCGC	3 cut(s)	547, 613, 714
BstMAI	GTCTC	4 cut(s)	12, 304, 726, 2012
BstMCI	CGRYCG	2 cut(s)	330, 334
BstNI	CCWGG	6 cut(s)	428, 581, 776, 1563, 1905, 2132
BstNSI	RCATGY	2 cut(s)	1181, 1473
BstPI	GGTNACC	1 cut(s)	1161
BstSCI	CCNGG	9 cut(s)	405, 426, 453, 579, 604, 774, 1561, 1903, 2130
BstSFI	CTRYAG	3 cut(s)	689, 897, 1277
BstV1I	GCAGC	6 cut(s)	333, 336, 404, 911, 1102, 2035
BstX2I	RGATCY	3 cut(s)	871, 1430, 2169
BstYI	RGATCY	3 cut(s)	871, 1430, 2169
Bsu36I	CCTNAGG	1 cut(s)	876
BsuRI	GGCC	7 cut(s)	425, 587, 752, 916, 1049, 1860, 2135
BtgI	CCRYGG	1 cut(s)	21
BtsIMutI	CAGTG	1 cut(s)	1199
Cac8I	GCNNGC	4 cut(s)	361, 1051, 1281, 1448
CaiI	CAGNNNCTG	2 cut(s)	1115, 1718
CfoI	GCGC	3 cut(s)	547, 613, 714
Cfr10I	RCCGGY	1 cut(s)	1049
Cfr13I	GGNCC	5 cut(s)	424, 451, 586, 1319, 1558
CseI	GACGC	1 cut(s)	407
Csp6I	GTAC	3 cut(s)	1248, 1315, 1960
CviQI	GTAC	3 cut(s)	1248, 1315, 1960
DdeI	CTNAG	6 cut(s)	684, 804, 876, 1167, 1395, 1979
DinI	GGCGCC	1 cut(s)	546
DraI	TTTAAA	1 cut(s)	1305
DrdI	GACNNNNNNGTC	1 cut(s)	1679
DseDI	GACNNNNNNGTC	1 cut(s)	1679
Eam1104I	CTCTTC	3 cut(s)	46, 58, 64
EarI	CTCTTC	3 cut(s)	46, 58, 64
EciI	GGCGGA	3 cut(s)	226, 494, 965
Eco130I	CCWWGG	3 cut(s)	21, 753, 939
Eco147I	AGGCCT	2 cut(s)	1860, 2135
Eco47I	GGWCC	3 cut(s)	451, 1319, 1558
Eco47III	AGCGCT	1 cut(s)	713
Eco57I	CTGAAG	3 cut(s)	1679, 1839, 2012
Eco81I	CCTNAGG	1 cut(s)	876
Eco88I	CYCGRG	1 cut(s)	1145
Eco91I	GGTNACC	1 cut(s)	1161
EcoNI	CCTNNNNNAGG	2 cut(s)	1043, 1991
EcoO109I	RGGNCCY	1 cut(s)	1558
EcoO65I	GGTNACC	1 cut(s)	1161
EcoRI	GAATTC	1 cut(s)	1972
EcoRII	CCWGG	6 cut(s)	426, 579, 774, 1561, 1903, 2130
EcoT14I	CCWWGG	3 cut(s)	21, 753, 939
EcoT22I	ATGCAT	3 cut(s)	167, 1475, 1537
EgeI	GGCGCC	1 cut(s)	546
EheI	GGCGCC	1 cut(s)	546
ErhI	CCWWGG	3 cut(s)	21, 753, 939
Esp3I	CGTCTC	2 cut(s)	304, 726
FaqI	GGGAC	4 cut(s)	298, 470, 1480, 1544
FauI	CCCGC	2 cut(s)	201, 378
FauNDI	CATATG	1 cut(s)	2041
FbaI	TGATCA	1 cut(s)	1042
FblI	GTMKAC	3 cut(s)	396, 1185, 1622
FspBI	CTAG	6 cut(s)	360, 621, 1637, 1745, 1914, 2052
FspI	TGCGCA	1 cut(s)	612
GlaI	GCGC	3 cut(s)	546, 612, 713
GsuI	CTGGAG	3 cut(s)	458, 1584, 1926
HaeII	RGCGCY	2 cut(s)	548, 715
HaeIII	GGCC	7 cut(s)	425, 587, 752, 916, 1049, 1860, 2135
HapII	CCGG	7 cut(s)	406, 454, 548, 606, 794, 1050, 2184
HgaI	GACGC	1 cut(s)	407
HhaI	GCGC	3 cut(s)	547, 613, 714
Hin1I	GRCGYC	2 cut(s)	399, 545
Hin6I	GCGC	3 cut(s)	545, 611, 712
HinP1I	GCGC	3 cut(s)	545, 611, 712
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	3 cut(s)	672, 1212, 2156
HpaII	CCGG	7 cut(s)	406, 454, 548, 606, 794, 1050, 2184
HphI	GGTGA	5 cut(s)	490, 724, 1155, 1738, 1892
Hpy166II	GTNNAC	6 cut(s)	397, 1072, 1186, 1507, 1623, 2105
Hpy188I	TCNGA	7 cut(s)	184, 304, 493, 934, 1021, 1430, 1822
Hpy8I	GTNNAC	6 cut(s)	397, 1072, 1186, 1507, 1623, 2105
Hpy99I	CGWCG	3 cut(s)	401, 539, 578
HpyAV	CCTTC	5 cut(s)	85, 235, 901, 1703, 1987
HpyCH4III	ACNGT	4 cut(s)	180, 335, 997, 1319
HpyCH4IV	ACGT	1 cut(s)	1308
HpyF3I	CTNAG	6 cut(s)	684, 804, 876, 1167, 1395, 1979
HpySE526I	ACGT	1 cut(s)	1308
Hsp92I	GRCGYC	2 cut(s)	399, 545
HspAI	GCGC	3 cut(s)	545, 611, 712
KasI	GGCGCC	1 cut(s)	544
Kpn2I	TCCGGA	1 cut(s)	793
KroI	GCCGGC	1 cut(s)	1049
KroNI	GCCGGC	1 cut(s)	1051
Ksp22I	TGATCA	1 cut(s)	1042
LmnI	GCTCC	8 cut(s)	129, 239, 280, 291, 322, 381, 1781, 1988
Lsp1109I	GCAGC	6 cut(s)	333, 336, 404, 911, 1102, 2035
LweI	GCATC	8 cut(s)	174, 971, 1102, 1127, 1459, 1489, 1522, 1958
MaeI	CTAG	6 cut(s)	360, 621, 1637, 1745, 1914, 2052
MaeII	ACGT	1 cut(s)	1308
MaeIII	GTNAC	2 cut(s)	1161, 1726
MbiI	CCGCTC	2 cut(s)	196, 376
MfeI	CAATTG	1 cut(s)	1734
MflI	RGATCY	3 cut(s)	871, 1430, 2169
MluCI	AATT	9 cut(s)	1092, 1239, 1389, 1734, 1800, 1846, 1932, 1972, 2109
Mly113I	GGCGCC	1 cut(s)	545
MlyI	GAGTC	3 cut(s)	14, 1319, 1817
Mph1103I	ATGCAT	3 cut(s)	167, 1475, 1537
MroI	TCCGGA	1 cut(s)	793
MroNI	GCCGGC	1 cut(s)	1049
MroXI	GAANNNNTTC	1 cut(s)	2109
MseI	TTAA	8 cut(s)	141, 627, 677, 822, 963, 1191, 1304, 1863
MslI	CAYNNNNRTG	1 cut(s)	1967
MspI	CCGG	7 cut(s)	406, 454, 548, 606, 794, 1050, 2184
MspR9I	CCNGG	9 cut(s)	407, 428, 455, 581, 606, 776, 1563, 1905, 2132
MunI	CAATTG	1 cut(s)	1734
Mva1269I	GAATGC	1 cut(s)	1156
MvaI	CCWGG	6 cut(s)	428, 581, 776, 1563, 1905, 2132
NaeI	GCCGGC	1 cut(s)	1051
NarI	GGCGCC	1 cut(s)	545
NciI	CCSGG	3 cut(s)	407, 455, 606
NcoI	CCATGG	1 cut(s)	21
NdeI	CATATG	1 cut(s)	2041
NgoMIV	GCCGGC	1 cut(s)	1049
NheI	GCTAGC	1 cut(s)	359
NlaIV	GGNNCC	5 cut(s)	149, 324, 546, 873, 1560
NmuCI	GTSAC	2 cut(s)	1161, 1726
NsbI	TGCGCA	1 cut(s)	612
NsiI	ATGCAT	3 cut(s)	167, 1475, 1537
NspI	RCATGY	2 cut(s)	1181, 1473
PaeR7I	CTCGAG	1 cut(s)	1145
PceI	AGGCCT	2 cut(s)	1860, 2135
PctI	GAATGC	1 cut(s)	1156
PdiI	GCCGGC	1 cut(s)	1051
PdmI	GAANNNNTTC	1 cut(s)	2109
PfeI	GAWTC	8 cut(s)	383, 488, 745, 935, 953, 1421, 1715, 2055
PflFI	GACNNNGTC	1 cut(s)	335
Ple19I	CGATCG	1 cut(s)	330
PleI	GAGTC	3 cut(s)	13, 1319, 1817
PluTI	GGCGCC	1 cut(s)	548
PpsI	GAGTC	3 cut(s)	13, 1319, 1817
PpuMI	RGGWCCY	1 cut(s)	1558
PshBI	ATTAAT	1 cut(s)	1191
Psp5II	RGGWCCY	1 cut(s)	1558
Psp6I	CCWGG	6 cut(s)	426, 579, 774, 1561, 1903, 2130
PspEI	GGTNACC	1 cut(s)	1161
PspGI	CCWGG	6 cut(s)	426, 579, 774, 1561, 1903, 2130
PspN4I	GGNNCC	5 cut(s)	149, 324, 546, 873, 1560
PspPI	GGNCC	5 cut(s)	424, 451, 586, 1319, 1558
PspPPI	RGGWCCY	1 cut(s)	1558
PstI	CTGCAG	2 cut(s)	901, 1281
PstNI	CAGNNNCTG	2 cut(s)	1115, 1718
PsuI	RGATCY	3 cut(s)	871, 1430, 2169
PsyI	GACNNNGTC	1 cut(s)	335
PvuI	CGATCG	1 cut(s)	330
RsaI	GTAC	3 cut(s)	1249, 1316, 1961
RsaNI	GTAC	3 cut(s)	1248, 1315, 1960
RseI	CAYNNNNRTG	1 cut(s)	1967
SalI	GTCGAC	1 cut(s)	395
SaqAI	TTAA	8 cut(s)	141, 627, 677, 822, 963, 1191, 1304, 1863
Sau96I	GGNCC	5 cut(s)	424, 451, 586, 1319, 1558
SchI	GAGTC	3 cut(s)	14, 1319, 1817
ScrFI	CCNGG	9 cut(s)	407, 428, 455, 581, 606, 776, 1563, 1905, 2132
SfaNI	GCATC	8 cut(s)	174, 971, 1102, 1127, 1459, 1489, 1522, 1958
SfcI	CTRYAG	3 cut(s)	689, 897, 1277
SfoI	GGCGCC	1 cut(s)	546
Sfr274I	CTCGAG	1 cut(s)	1145
SinI	GGWCC	3 cut(s)	451, 1319, 1558
SlaI	CTCGAG	1 cut(s)	1145
SmiMI	CAYNNNNRTG	1 cut(s)	1967
SmlI	CTYRAG	3 cut(s)	1145, 1290, 1358
SmoI	CTYRAG	3 cut(s)	1145, 1290, 1358
SpeI	ACTAGT	1 cut(s)	1744
Sse9I	AATT	9 cut(s)	1092, 1239, 1389, 1734, 1800, 1846, 1932, 1972, 2109
SseBI	AGGCCT	2 cut(s)	1860, 2135
SspDI	GGCGCC	1 cut(s)	544
SspI	AATATT	1 cut(s)	1345
SspMI	CTAG	6 cut(s)	360, 621, 1637, 1745, 1914, 2052
StuI	AGGCCT	2 cut(s)	1860, 2135
StyD4I	CCNGG	9 cut(s)	405, 426, 453, 579, 604, 774, 1561, 1903, 2130
StyI	CCWWGG	3 cut(s)	21, 753, 939
TaaI	ACNGT	4 cut(s)	180, 335, 997, 1319
TaiI	ACGT	1 cut(s)	1311
TaqI	TCGA	7 cut(s)	330, 396, 474, 534, 708, 1146, 1554
TaqII	GACCGA	1 cut(s)	587
TasI	AATT	9 cut(s)	1092, 1239, 1389, 1734, 1800, 1846, 1932, 1972, 2109
TatI	WGTACW	1 cut(s)	1247
TauI	GCSGC	6 cut(s)	242, 346, 376, 545, 587, 703
TfiI	GAWTC	8 cut(s)	383, 488, 745, 935, 953, 1421, 1715, 2055
Tru1I	TTAA	8 cut(s)	141, 627, 677, 822, 963, 1191, 1304, 1863
Tru9I	TTAA	8 cut(s)	141, 627, 677, 822, 963, 1191, 1304, 1863
TscAI	CASTG	1 cut(s)	1206
TseFI	GTSAC	2 cut(s)	1161, 1726
TseI	GCWGC	6 cut(s)	346, 349, 417, 899, 1115, 2048
Tsp45I	GTSAC	2 cut(s)	1161, 1726
TspGWI	ACGGA	4 cut(s)	335, 517, 1947, 2169
TspRI	CASTG	1 cut(s)	1206
Tth111I	GACNNNGTC	1 cut(s)	335
VpaK11BI	GGWCC	3 cut(s)	451, 1319, 1558
VspI	ATTAAT	1 cut(s)	1191
XagI	CCTNNNNNAGG	2 cut(s)	1043, 1991
XapI	RAATTY	1 cut(s)	1972
XbaI	TCTAGA	1 cut(s)	1636
XceI	RCATGY	2 cut(s)	1181, 1473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XhoI	CTCGAG	1 cut(s)	1145
XmiI	GTMKAC	3 cut(s)	396, 1185, 1622
XmnI	GAANNNNTTC	1 cut(s)	2109
XspI	CTAG	6 cut(s)	360, 621, 1637, 1745, 1914, 2052
Zsp2I	ATGCAT	3 cut(s)	167, 1475, 1537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.