Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0013570

Physical Location & Seq

Genomic Coordinates Forward (+)

10129442 .. 10133710

Gene Structure 4269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG128400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2004 bp

ATGGAGTCTTCTGCAACCACCATGGCTTTGAGAGCCACCTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTCATCCTCCTCCTCCTTCTTCTCCTCCATTCCCCCAACCCAAAAGCCCCAGTCTTTGCCTTTCAAGCTCCAACCTTTTCGCTTTAAGAGGCACCAATCCCTAAAATGCATCCAATCCCCACCGTCCGATCCCAACCCCAAAAACCCTACCTTCTCCTGCTCCGCCGCCACCCTCTCCCCCTCTCCCACCGCCGACCTCGCTCCCTCCAAGCTCCACCGCCTCGTCTCCGAGTTCCAGTCCCTCACGCAGCCGATCGACCGTGTCAAGCGGCTGCTGCACTACGCCAGCCTCCTCCCGCCGCTCCCCGATTCGGGTCGGGTCGACGCCAACCGGGTCATGGGCTGCACGGCCCAGGTCTGGCTGGAGGCGAAGATGGACCAGGACGGCAAGATGAGGTTCGCGGCGGACAGCGATTCCGAGATCACCAGAGGGTTCTGCTCGTGTTTGGTGTCCGTTCTCGACGGGGCAGCGCCGGAGGAGGTCTTGGCCGTCAAGACGGACGACCTGGCGGCGCTCAATGTTGTTGGGTTGCCCGGTGCGCAGAGGTCTAGGGTTAATACGTGGCATAATGTGTTGGTCAGTATGCACAAAAAGACTAAAGCTTTAATGGCTGAGCTACAGGGGAAGCCGCCGTTCGAGCGCTTCCCGTCTCTGGTCATCACCGCCGATGGGATTCAGGCCAAGGGTAGCTACGCCGAAGCCCAGGCAAGGTATTTGTTTCCGGATGCGGCTAAGGTTGAGGAACTTGTTAATGTGTTGAAAGAGAAGAAGATTGGGGTGGTTGCTCATTTTTACATGGATCCTGAGGTTCAGGGTATTTTGACTGCAGCAAAGAAGCATTGGCCTCACATTCACATTTCGGATTCATTGGTCATGGCAGATTCGGCTGTGAAGATGGCGAAAGATGGATGCGAGTTTATTACAGTTTTGGGTGTTGATTTTATGTCTGAAAATGTCAGGGCGATCCTTGATCAGGCTGGCTTTCAAAAGGTCGGTGTTTACAGGATGTCAAATGAACGAATTGGTTGTTCTTTGGCAGATGCTGCATCTTCCCCTTCTTATATGAGTTATCTCGAGAATGCTTCAAGGTCACCTCAGTCATTGCATGTTGTCTACATTAATACATCACTGGAAACAAAAGCTTATGCACATGAGCTTGTGCCAACAATTACCTGCACTTCTTCAAATGTTGTCCAAACCATTCTGCAGGCTTTTTCTCAAGTGCCAGATTTAAACGTATGGTACGGTCCTGACTCTTACATGGGTGCAAATATTAGAGTATTACTTGAGCAGATGACAAAGATGACAGATGAAGAAATTGCTGAGATACATCCAGCACACAATAGAGACTCAATCAGATCTCTGCTACCTCGCCTGCATCATTATCAGGATGGGACATGCATAGTGCATCATTTGTTTGGAAATGAGGTTGTGAACAGGATAAATGAAATGTATTGTGATGCATTTCTAACTGCTCATTTCGAGGTCCCTGGAGAAATGTTTGCTCTGGCAATGGAAGCAAAGAGGAGAGGAATGGGAGTTGTGGGGTCTACCCAAAACATTCTAGATTTCATAAAACAGAGGGTTCAAGAGGCTTTAGACAGAAATGTCAATGACCACCTTCAGTTCATATTAGGAACAGAATCTGGAATGGTGACTTCAATTGTTGCACTAGTTCGCAGTTTGTTAGGTTCTGCAAAGTCAGGGGGAGCAAAGATCAATGTTGAAATTGTATTTCCAGTTTCATCAGACTCAATGACAAGCACATCATCCAATTCTTCTTCAGGCCTTAACCCTATTAAGGTGGGTGATGTCATACTACCTGTTATACCTGGAGTGGCTAGTGGGGAGGGGTGTTCAATTCATGGTGGGTGTGCATCCTGTCCGTACATGAAGGTTAGCATTTCCTTTCCAGAAGTTTTATTCTTTTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006091 GO:0006139 GO:0006520 GO:0006531 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008047 GO:0008150 GO:0008152 GO:0008987 GO:0009058 GO:0009060 GO:0009066 GO:0009108 GO:0009117 GO:0009165 GO:0009435 GO:0009507 GO:0009536 GO:0009893 GO:0009987 GO:0015980 GO:0016043 GO:0016053 GO:0016226 GO:0017144 GO:0018130 GO:0019222 GO:0019355 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019637 GO:0019674 GO:0019752 GO:0019805 GO:0022607 GO:0030234 GO:0031163 GO:0031323 GO:0031325 GO:0034627 GO:0034628 GO:0034641 GO:0034654 GO:0042762 GO:0042802 GO:0042803 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044085 GO:0044093 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0045333 GO:0046394 GO:0046483 GO:0046496 GO:0046874 GO:0046983 GO:0048037 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0051176 GO:0051186 GO:0051188 GO:0051536 GO:0051539 GO:0051540 GO:0055086 GO:0055114 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0072524 GO:0072525 GO:0090407 GO:0098772 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

NadA SufE

Protein Analysis

667

Amino Acids

72.51

Weight (kDa)

6.47

Isoelectric Point (pI)

61.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufE	PF02657	99 - 220	5.8e-30	Fe-S metabolism associated domain
NadA	PF02445	272 - 578	7.7e-31	Quinolinate synthetase A protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0013570)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50210
fragaria_vesca	FvH4_5g06430 FvH4_5g06430 FvH4_5g06430 FvH4_5g06430
malus_domestica	MD06G1164800.v1.1 MD14G1170100.v1.1
prunus_persica	Prupe.5G164300_v2.0.a1
pyrus_communis	pycom06g14740
rosa_chinensis	RchiOBHm_Chr7g0192351
rosa_laevigata	RLG00000004377
rosa_multiflora	Rmu_sc0003108.1_g000001
rosa_roxburghii	Rroxscaffold_3G00263110
rosa_rugosa	Rorug07G0000600
rosa_samantha	Rh7BG126800 Rh7CG128400 Rh7DG128400
rosa_wichuraiana	Rw7G010710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1676
Acc16I	TGCGCA	1 cut(s)	609
Acc36I	ACCTGC	1 cut(s)	1250
AccB1I	GGYRCC	1 cut(s)	159
AccBSI	CCGCTC	1 cut(s)	370
AccI	GTMKAC	3 cut(s)	390, 1182, 1619
AccII	CGCG	1 cut(s)	470
AccIII	TCCGGA	1 cut(s)	790
AclWI	GGATC	4 cut(s)	191, 863, 876, 1027
AcoI	YGGCCR	1 cut(s)	555
AcuI	CTGAAG	2 cut(s)	1676, 1836
AcyI	GRCGYC	1 cut(s)	393
AfaI	GTAC	2 cut(s)	1313, 1958
AfeI	AGCGCT	1 cut(s)	710
AfiI	CCNNNNNNNGG	9 cut(s)	379, 380, 406, 426, 721, 738, 777, 1042, 1870
AgsI	TTSAA	9 cut(s)	133, 829, 1055, 1155, 1254, 1658, 1731, 1796, 1929
AhlI	ACTAGT	1 cut(s)	1741
AjnI	CCWGG	6 cut(s)	420, 447, 573, 771, 1558, 1900
AluBI	AGCT	7 cut(s)	136, 280, 671, 685, 759, 1211, 1225
AluI	AGCT	7 cut(s)	136, 280, 671, 685, 759, 1211, 1225
Alw26I	GTCTC	3 cut(s)	298, 723, 1410
AlwI	GGATC	4 cut(s)	191, 863, 876, 1027
AlwNI	CAGNNNCTG	2 cut(s)	1112, 1715
Ama87I	CYCGRG	1 cut(s)	1142
Aor13HI	TCCGGA	1 cut(s)	790
Aor51HI	AGCGCT	1 cut(s)	710
AoxI	GGCC	5 cut(s)	417, 555, 747, 911, 1855
ApeKI	GCWGC	7 cut(s)	316, 340, 343, 411, 536, 896, 1112
AseI	ATTAAT	1 cut(s)	1188
AspLEI	GCGC	4 cut(s)	541, 583, 610, 711
AspS9I	GGNCC	4 cut(s)	418, 445, 1316, 1555
AsuC2I	CCSGG	2 cut(s)	401, 603
AsuHPI	GGTGA	5 cut(s)	484, 721, 1152, 1735, 1889
AvaI	CYCGRG	1 cut(s)	1142
AvaII	GGWCC	3 cut(s)	445, 1316, 1555
AxyI	CCTNAGG	1 cut(s)	873
BamHI	GGATCC	1 cut(s)	868
BanI	GGYRCC	1 cut(s)	159
BauI	CACGAG	1 cut(s)	508
BbvI	GCAGC	7 cut(s)	327, 328, 330, 398, 548, 908, 1099
BccI	CCATC	5 cut(s)	436, 731, 958, 968, 1454
BceAI	ACGGC	4 cut(s)	432, 469, 542, 685
BciT130I	CCWGG	6 cut(s)	422, 449, 575, 773, 1560, 1902
BclI	TGATCA	1 cut(s)	1039
BcnI	CCSGG	2 cut(s)	401, 603
BcoDI	GTCTC	3 cut(s)	298, 723, 1410
BcuI	ACTAGT	1 cut(s)	1741
BfaI	CTAG	4 cut(s)	618, 1634, 1742, 1911
BfmI	CTRYAG	3 cut(s)	686, 894, 1274
BfoI	RGCGCY	3 cut(s)	542, 584, 712
BfuAI	ACCTGC	1 cut(s)	1250
BglII	AGATCT	1 cut(s)	1427
BlpI	GCTNAGC	1 cut(s)	681
Bme1390I	CCNGG	8 cut(s)	401, 422, 449, 575, 603, 773, 1560, 1902
Bme18I	GGWCC	3 cut(s)	445, 1316, 1555
BmeT110I	CYCGRG	1 cut(s)	1142
BmgT120I	GGNCC	4 cut(s)	418, 445, 1316, 1555
BmiI	GGNNCC	3 cut(s)	161, 870, 1557
BmrFI	CCNGG	8 cut(s)	401, 422, 449, 575, 603, 773, 1560, 1902
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	9 cut(s)	186, 784, 968, 1099, 1124, 1456, 1486, 1519, 1955
BmuI	ACTGGG	1 cut(s)	112
BpmI	CTGGAG	3 cut(s)	452, 1581, 1923
Bpu10I	CCTNAGC	1 cut(s)	801
Bpu1102I	GCTNAGC	1 cut(s)	681
BpuEI	CTTGAG	2 cut(s)	1272, 1376
BpuMI	CCSGG	2 cut(s)	401, 603
BsaAI	YACGTR	1 cut(s)	630
BsaHI	GRCGYC	1 cut(s)	393
BsaJI	CCNNGG	5 cut(s)	21, 420, 750, 771, 1558
BsaWI	WCCGGW	1 cut(s)	790
Bsc4I	CCNNNNNNNGG	9 cut(s)	379, 380, 406, 426, 721, 738, 777, 1042, 1870
Bse1I	ACTGG	4 cut(s)	118, 304, 1203, 1808
Bse21I	CCTNAGG	1 cut(s)	873
Bse3DI	GCAATG	2 cut(s)	1169, 1587
BseAI	TCCGGA	1 cut(s)	790
BseBI	CCWGG	6 cut(s)	422, 449, 575, 773, 1560, 1902
BseDI	CCNNGG	5 cut(s)	21, 420, 750, 771, 1558
BseGI	GGATG	9 cut(s)	71, 177, 799, 983, 1080, 1399, 1465, 1838, 1946
BseLI	CCNNNNNNNGG	9 cut(s)	379, 380, 406, 426, 721, 738, 777, 1042, 1870
BseMI	GCAATG	2 cut(s)	1169, 1587
BseMII	CTCAG	4 cut(s)	672, 864, 1178, 1383
BseNI	ACTGG	4 cut(s)	118, 304, 1203, 1808
BseRI	GAGGAG	6 cut(s)	67, 70, 82, 350, 560, 1609
BseXI	GCAGC	7 cut(s)	327, 328, 330, 398, 548, 908, 1099
BsgI	GTGCAG	3 cut(s)	329, 397, 1228
Bsh1236I	CGCG	1 cut(s)	470
Bsh1285I	CGRYCG	2 cut(s)	324, 328
BshFI	GGCC	5 cut(s)	419, 557, 749, 913, 1857
BshNI	GGYRCC	1 cut(s)	159
BsiEI	CGRYCG	2 cut(s)	324, 328
BsiHKCI	CYCGRG	1 cut(s)	1142
BsiSI	CCGG	4 cut(s)	400, 542, 603, 791
BslFI	GGGAC	3 cut(s)	292, 1477, 1541
BslI	CCNNNNNNNGG	9 cut(s)	379, 380, 406, 426, 721, 738, 777, 1042, 1870
BsmAI	GTCTC	3 cut(s)	298, 723, 1410
BsmBI	CGTCTC	2 cut(s)	298, 723
BsmFI	GGGAC	3 cut(s)	292, 1477, 1541
BsmI	GAATGC	1 cut(s)	1153
BsnI	GGCC	5 cut(s)	419, 557, 749, 913, 1857
BsoBI	CYCGRG	1 cut(s)	1142
Bsp13I	TCCGGA	1 cut(s)	790
Bsp143I	GATC	8 cut(s)	196, 321, 489, 868, 1032, 1039, 1427, 1785
Bsp1720I	GCTNAGC	1 cut(s)	681
Bsp19I	CCATGG	1 cut(s)	21
BspANI	GGCC	5 cut(s)	419, 557, 749, 913, 1857
BspCNI	CTCAG	4 cut(s)	673, 865, 1177, 1384
BspEI	TCCGGA	1 cut(s)	790
BspFNI	CGCG	1 cut(s)	470
BspLI	GGNNCC	3 cut(s)	161, 870, 1557
BspMAI	CTGCAG	2 cut(s)	898, 1278
BspMI	ACCTGC	1 cut(s)	1250
BspPI	GGATC	4 cut(s)	191, 863, 876, 1027
BspT107I	GGYRCC	1 cut(s)	159
BsrBI	CCGCTC	1 cut(s)	370
BsrDI	GCAATG	2 cut(s)	1169, 1587
BsrI	ACTGG	4 cut(s)	118, 304, 1203, 1808
BssECI	CCNNGG	5 cut(s)	21, 420, 750, 771, 1558
BssMI	GATC	8 cut(s)	196, 321, 489, 868, 1032, 1039, 1427, 1785
BssNI	GRCGYC	1 cut(s)	393
BssSI	CACGAG	1 cut(s)	508
BssT1I	CCWWGG	2 cut(s)	21, 750
Bst2BI	CACGAG	1 cut(s)	508
Bst2UI	CCWGG	6 cut(s)	422, 449, 575, 773, 1560, 1902
Bst4CI	ACNGT	4 cut(s)	192, 329, 994, 1316
Bst6I	CTCTTC	2 cut(s)	46, 73
BstACI	GRCGYC	1 cut(s)	393
BstAPI	GCANNNNNTGC	1 cut(s)	1112
BstBAI	YACGTR	1 cut(s)	630
BstC8I	GCNNGC	4 cut(s)	355, 1048, 1278, 1445
BstDEI	CTNAG	5 cut(s)	681, 801, 873, 1164, 1392
BstDSI	CCRYGG	1 cut(s)	21
BstEII	GGTNACC	1 cut(s)	1158
BstENI	CCTNNNNNAGG	1 cut(s)	1040
BstF5I	GGATG	9 cut(s)	71, 177, 799, 983, 1080, 1399, 1465, 1838, 1946
BstFNI	CGCG	1 cut(s)	470
BstH2I	RGCGCY	3 cut(s)	542, 584, 712
BstHHI	GCGC	4 cut(s)	541, 583, 610, 711
BstKTI	GATC	8 cut(s)	199, 324, 492, 871, 1035, 1042, 1430, 1788
BstMAI	GTCTC	3 cut(s)	298, 723, 1410
BstMBI	GATC	8 cut(s)	196, 321, 489, 868, 1032, 1039, 1427, 1785
BstMCI	CGRYCG	2 cut(s)	324, 328
BstNI	CCWGG	6 cut(s)	422, 449, 575, 773, 1560, 1902
BstNSI	RCATGY	2 cut(s)	1178, 1470
BstPI	GGTNACC	1 cut(s)	1158
BstSCI	CCNGG	8 cut(s)	399, 420, 447, 573, 601, 771, 1558, 1900
BstSFI	CTRYAG	3 cut(s)	686, 894, 1274
BstUI	CGCG	1 cut(s)	470
BstV1I	GCAGC	7 cut(s)	327, 328, 330, 398, 548, 908, 1099
BstX2I	RGATCY	2 cut(s)	868, 1427
BstYI	RGATCY	2 cut(s)	868, 1427
Bsu36I	CCTNAGG	1 cut(s)	873
BsuRI	GGCC	5 cut(s)	419, 557, 749, 913, 1857
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	9 cut(s)	71, 177, 799, 983, 1080, 1399, 1465, 1838, 1946
BtsIMutI	CAGTG	1 cut(s)	1196
BveI	ACCTGC	1 cut(s)	1250
Cac8I	GCNNGC	4 cut(s)	355, 1048, 1278, 1445
CaiI	CAGNNNCTG	2 cut(s)	1112, 1715
CfoI	GCGC	4 cut(s)	541, 583, 610, 711
Cfr13I	GGNCC	4 cut(s)	418, 445, 1316, 1555
CseI	GACGC	1 cut(s)	401
Csp6I	GTAC	2 cut(s)	1312, 1957
CviQI	GTAC	2 cut(s)	1312, 1957
DdeI	CTNAG	5 cut(s)	681, 801, 873, 1164, 1392
DpnI	GATC	8 cut(s)	198, 323, 491, 870, 1034, 1041, 1429, 1787
DpnII	GATC	8 cut(s)	196, 321, 489, 868, 1032, 1039, 1427, 1785
DraI	TTTAAA	1 cut(s)	1302
DrdI	GACNNNNNNGTC	1 cut(s)	1676
DseDI	GACNNNNNNGTC	1 cut(s)	1676
EaeI	YGGCCR	1 cut(s)	555
Eam1104I	CTCTTC	2 cut(s)	46, 73
EarI	CTCTTC	2 cut(s)	46, 73
EciI	GGCGGA	2 cut(s)	220, 488
Eco130I	CCWWGG	2 cut(s)	21, 750
Eco147I	AGGCCT	1 cut(s)	1857
Eco47I	GGWCC	3 cut(s)	445, 1316, 1555
Eco47III	AGCGCT	1 cut(s)	710
Eco57I	CTGAAG	2 cut(s)	1676, 1836
Eco81I	CCTNAGG	1 cut(s)	873
Eco88I	CYCGRG	1 cut(s)	1142
Eco91I	GGTNACC	1 cut(s)	1158
EcoNI	CCTNNNNNAGG	1 cut(s)	1040
EcoO109I	RGGNCCY	1 cut(s)	1555
EcoO65I	GGTNACC	1 cut(s)	1158
EcoRII	CCWGG	6 cut(s)	420, 447, 573, 771, 1558, 1900
EcoT14I	CCWWGG	2 cut(s)	21, 750
EcoT22I	ATGCAT	3 cut(s)	179, 1472, 1534
ErhI	CCWWGG	2 cut(s)	21, 750
Esp3I	CGTCTC	2 cut(s)	298, 723
FaqI	GGGAC	3 cut(s)	292, 1477, 1541
FauI	CCCGC	1 cut(s)	372
FbaI	TGATCA	1 cut(s)	1039
FblI	GTMKAC	3 cut(s)	390, 1182, 1619
FokI	GGATG	9 cut(s)	58, 164, 806, 990, 1087, 1386, 1472, 1825, 1933
FspBI	CTAG	4 cut(s)	618, 1634, 1742, 1911
FspI	TGCGCA	1 cut(s)	609
GlaI	GCGC	4 cut(s)	540, 582, 609, 710
GsuI	CTGGAG	3 cut(s)	452, 1581, 1923
HaeII	RGCGCY	3 cut(s)	542, 584, 712
HaeIII	GGCC	5 cut(s)	419, 557, 749, 913, 1857
HapII	CCGG	4 cut(s)	400, 542, 603, 791
HgaI	GACGC	1 cut(s)	401
HhaI	GCGC	4 cut(s)	541, 583, 610, 711
Hin1I	GRCGYC	1 cut(s)	393
Hin6I	GCGC	4 cut(s)	539, 581, 608, 709
HinP1I	GCGC	4 cut(s)	539, 581, 608, 709
HincII	GTYRAC	1 cut(s)	391
HindII	GTYRAC	1 cut(s)	391
HindIII	AAGCTT	2 cut(s)	669, 1209
HpaII	CCGG	4 cut(s)	400, 542, 603, 791
HphI	GGTGA	5 cut(s)	484, 721, 1152, 1735, 1889
Hpy166II	GTNNAC	5 cut(s)	391, 1069, 1183, 1504, 1620
Hpy188I	TCNGA	7 cut(s)	196, 298, 487, 931, 1018, 1427, 1819
Hpy8I	GTNNAC	5 cut(s)	391, 1069, 1183, 1504, 1620
Hpy99I	CGWCG	2 cut(s)	395, 533
HpyAV	CCTTC	5 cut(s)	94, 229, 1134, 1700, 1957
HpyCH4III	ACNGT	4 cut(s)	192, 329, 994, 1316
HpyCH4IV	ACGT	2 cut(s)	629, 1305
HpyF3I	CTNAG	5 cut(s)	681, 801, 873, 1164, 1392
HpySE526I	ACGT	2 cut(s)	629, 1305
Hsp92I	GRCGYC	1 cut(s)	393
HspAI	GCGC	4 cut(s)	539, 581, 608, 709
Kpn2I	TCCGGA	1 cut(s)	790
Ksp22I	TGATCA	1 cut(s)	1039
Kzo9I	GATC	8 cut(s)	196, 321, 489, 868, 1032, 1039, 1427, 1785
LmnI	GCTCC	6 cut(s)	141, 233, 274, 285, 375, 1778
Lsp1109I	GCAGC	7 cut(s)	327, 328, 330, 398, 548, 908, 1099
LweI	GCATC	9 cut(s)	186, 784, 968, 1099, 1124, 1456, 1486, 1519, 1955
MaeI	CTAG	4 cut(s)	618, 1634, 1742, 1911
MaeII	ACGT	2 cut(s)	629, 1305
MaeIII	GTNAC	2 cut(s)	1158, 1723
MalI	GATC	8 cut(s)	198, 323, 491, 870, 1034, 1041, 1429, 1787
MbiI	CCGCTC	1 cut(s)	370
MboI	GATC	8 cut(s)	196, 321, 489, 868, 1032, 1039, 1427, 1785
MfeI	CAATTG	1 cut(s)	1731
MflI	RGATCY	2 cut(s)	868, 1427
MluCI	AATT	7 cut(s)	1089, 1236, 1386, 1731, 1797, 1843, 1929
MlyI	GAGTC	4 cut(s)	14, 1316, 1412, 1814
MmeI	TCCRAC	1 cut(s)	163
Mph1103I	ATGCAT	3 cut(s)	179, 1472, 1534
MroI	TCCGGA	1 cut(s)	790
MseI	TTAA	8 cut(s)	153, 624, 674, 819, 1188, 1301, 1860, 1869
MspI	CCGG	4 cut(s)	400, 542, 603, 791
MspR9I	CCNGG	8 cut(s)	401, 422, 449, 575, 603, 773, 1560, 1902
MunI	CAATTG	1 cut(s)	1731
Mva1269I	GAATGC	1 cut(s)	1153
MvaI	CCWGG	6 cut(s)	422, 449, 575, 773, 1560, 1902
MvnI	CGCG	1 cut(s)	470
NciI	CCSGG	2 cut(s)	401, 603
NcoI	CCATGG	1 cut(s)	21
NdeII	GATC	8 cut(s)	196, 321, 489, 868, 1032, 1039, 1427, 1785
NlaIV	GGNNCC	3 cut(s)	161, 870, 1557
NmuCI	GTSAC	2 cut(s)	1158, 1723
NsbI	TGCGCA	1 cut(s)	609
NsiI	ATGCAT	3 cut(s)	179, 1472, 1534
NspI	RCATGY	2 cut(s)	1178, 1470
PaeR7I	CTCGAG	1 cut(s)	1142
PceI	AGGCCT	1 cut(s)	1857
PctI	GAATGC	1 cut(s)	1153
PfeI	GAWTC	6 cut(s)	377, 482, 742, 932, 950, 1712
PflFI	GACNNNGTC	1 cut(s)	329
Ple19I	CGATCG	1 cut(s)	324
PleI	GAGTC	4 cut(s)	13, 1316, 1412, 1814
PpsI	GAGTC	4 cut(s)	13, 1316, 1412, 1814
Ppu21I	YACGTR	1 cut(s)	630
PpuMI	RGGWCCY	1 cut(s)	1555
PshBI	ATTAAT	1 cut(s)	1188
Psp5II	RGGWCCY	1 cut(s)	1555
Psp6I	CCWGG	6 cut(s)	420, 447, 573, 771, 1558, 1900
PspEI	GGTNACC	1 cut(s)	1158
PspGI	CCWGG	6 cut(s)	420, 447, 573, 771, 1558, 1900
PspN4I	GGNNCC	3 cut(s)	161, 870, 1557
PspPI	GGNCC	4 cut(s)	418, 445, 1316, 1555
PspPPI	RGGWCCY	1 cut(s)	1555
PstI	CTGCAG	2 cut(s)	898, 1278
PstNI	CAGNNNCTG	2 cut(s)	1112, 1715
PsuI	RGATCY	2 cut(s)	868, 1427
PsyI	GACNNNGTC	1 cut(s)	329
PvuI	CGATCG	1 cut(s)	324
RsaI	GTAC	2 cut(s)	1313, 1958
RsaNI	GTAC	2 cut(s)	1312, 1957
SalI	GTCGAC	1 cut(s)	389
SaqAI	TTAA	8 cut(s)	153, 624, 674, 819, 1188, 1301, 1860, 1869
Sau3AI	GATC	8 cut(s)	196, 321, 489, 868, 1032, 1039, 1427, 1785
Sau96I	GGNCC	4 cut(s)	418, 445, 1316, 1555
SchI	GAGTC	4 cut(s)	14, 1316, 1412, 1814
ScrFI	CCNGG	8 cut(s)	401, 422, 449, 575, 603, 773, 1560, 1902
SfaNI	GCATC	9 cut(s)	186, 784, 968, 1099, 1124, 1456, 1486, 1519, 1955
SfcI	CTRYAG	3 cut(s)	686, 894, 1274
Sfr274I	CTCGAG	1 cut(s)	1142
SinI	GGWCC	3 cut(s)	445, 1316, 1555
SlaI	CTCGAG	1 cut(s)	1142
SmlI	CTYRAG	3 cut(s)	1142, 1287, 1355
SmoI	CTYRAG	3 cut(s)	1142, 1287, 1355
SpeI	ACTAGT	1 cut(s)	1741
Sse9I	AATT	7 cut(s)	1089, 1236, 1386, 1731, 1797, 1843, 1929
SseBI	AGGCCT	1 cut(s)	1857
SspI	AATATT	1 cut(s)	1342
SspMI	CTAG	4 cut(s)	618, 1634, 1742, 1911
StuI	AGGCCT	1 cut(s)	1857
StyD4I	CCNGG	8 cut(s)	399, 420, 447, 573, 601, 771, 1558, 1900
StyI	CCWWGG	2 cut(s)	21, 750
TaaI	ACNGT	4 cut(s)	192, 329, 994, 1316
TaiI	ACGT	2 cut(s)	632, 1308
TaqI	TCGA	6 cut(s)	324, 390, 528, 705, 1143, 1551
TasI	AATT	7 cut(s)	1089, 1236, 1386, 1731, 1797, 1843, 1929
TauI	GCSGC	7 cut(s)	236, 340, 370, 473, 581, 700, 800
TfiI	GAWTC	6 cut(s)	377, 482, 742, 932, 950, 1712
Tru1I	TTAA	8 cut(s)	153, 624, 674, 819, 1188, 1301, 1860, 1869
Tru9I	TTAA	8 cut(s)	153, 624, 674, 819, 1188, 1301, 1860, 1869
TscAI	CASTG	1 cut(s)	1203
TseFI	GTSAC	2 cut(s)	1158, 1723
TseI	GCWGC	7 cut(s)	316, 340, 343, 411, 536, 896, 1112
Tsp45I	GTSAC	2 cut(s)	1158, 1723
TspGWI	ACGGA	3 cut(s)	511, 581, 1944
TspRI	CASTG	1 cut(s)	1203
Tth111I	GACNNNGTC	1 cut(s)	329
VpaK11BI	GGWCC	3 cut(s)	445, 1316, 1555
VspI	ATTAAT	1 cut(s)	1188
XagI	CCTNNNNNAGG	1 cut(s)	1040
XbaI	TCTAGA	1 cut(s)	1633
XceI	RCATGY	2 cut(s)	1178, 1470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	403
XhoI	CTCGAG	1 cut(s)	1142
XmiI	GTMKAC	3 cut(s)	390, 1182, 1619
XspI	CTAG	4 cut(s)	618, 1634, 1742, 1911
Zsp2I	ATGCAT	3 cut(s)	179, 1472, 1534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.