RchiOBHm_Chr7g0214141

Selenium-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0016965
Physical Location & Seq
Forward (+)
31378504 .. 31389049
10546 bp
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UTR
Exon/CDS
Intron
PRQ19164

Sequence Viewer

Length: 246 bp
ATGATAAGCACATCATGGGGTGCCCCTGCTGCTTTCACCAAAGGTTTCAACCTTCAGCATGTCTCTGATGGTCTCTATGGGAGGCATCTTCATGTCTACAGTTGGCCTGAGGGTGAATTGAAACAAACTTTGGACCGTGACAATGCAGGGCTCTTACCCTTGGAGGCGATAGAGGCTGATAATGTTATGGGCTCAAGTAGGGTTGATGAATTTGCTGAACCTGTTTTACAATTTGGACACAGGTAG

Protein Analysis

81

Amino Acids

8.98

Weight (kDa)

5.11

Isoelectric Point (pI)

35.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP56 PF05694 1 - 56 2.8e-15 56kDa selenium binding protein (SBP56)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AccI GTMKAC 1 cut(s) 96
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 1 cut(s) 38
AgsI TTSAA 2 cut(s) 49, 121
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
Alw26I GTCTC 2 cut(s) 67, 77
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 133
AsuHPI GGTGA 2 cut(s) 28, 125
AvaII GGWCC 1 cut(s) 133
AxyI CCTNAGG 1 cut(s) 108
BaeGI GKGCMC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 20
BanII GRGCYC 2 cut(s) 153, 194
BbvI GCAGC 1 cut(s) 16
BccI CCATC 1 cut(s) 62
BcoDI GTCTC 2 cut(s) 67, 77
BfmI CTRYAG 1 cut(s) 97
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 22
BmsI GCATC 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 159
Bse21I CCTNAGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 159
BseMII CTCAG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 25
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 106
BshNI GGYRCC 1 cut(s) 20
BsmAI GTCTC 2 cut(s) 67, 77
BsnI GGCC 1 cut(s) 106
Bso31I GGTCTC 1 cut(s) 77
Bsp1286I GDGCHC 3 cut(s) 25, 153, 194
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 22
BspT107I GGYRCC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 77
BssECI CCNNGG 1 cut(s) 159
BssT1I CCWWGG 1 cut(s) 159
Bst4CI ACNGT 2 cut(s) 101, 137
BstDEI CTNAG 1 cut(s) 108
BstMAI GTCTC 2 cut(s) 67, 77
BstMWI GCNNNNNNNGC 2 cut(s) 29, 173
BstNSI RCATGY 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 16
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 133
CviAII CATG 3 cut(s) 15, 59, 92
CviJI RGCY 4 cut(s) 106, 151, 176, 192
CviKI_1 RGCY 4 cut(s) 106, 151, 176, 192
DdeI CTNAG 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 159
Eco24I GRGCYC 2 cut(s) 153, 194
Eco31I GGTCTC 1 cut(s) 77
Eco47I GGWCC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 38
Eco81I CCTNAGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 159
EcoT38I GRGCYC 2 cut(s) 153, 194
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 3 cut(s) 18, 62, 95
FaiI YATR 5 cut(s) 16, 60, 78, 93, 188
FatI CATG 3 cut(s) 14, 58, 91
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 30
FriOI GRGCYC 2 cut(s) 153, 194
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 106
Hin1II CATG 3 cut(s) 18, 62, 95
HphI GGTGA 2 cut(s) 28, 125
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 2 cut(s) 101, 137
HpyCH4V TGCA 1 cut(s) 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 173
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 3 cut(s) 18, 62, 95
LpnPI CCDG 5 cut(s) 39, 120, 132, 226, 234
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 94
MaeIII GTNAC 1 cut(s) 137
MboII GAAGA 1 cut(s) 80
MhlI GDGCHC 3 cut(s) 25, 153, 194
MluCI AATT 3 cut(s) 116, 209, 230
MnlI CCTC 4 cut(s) 75, 103, 157, 166
MslI CAYNNNNRTG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 29, 173
NlaIII CATG 3 cut(s) 18, 62, 95
NlaIV GGNNCC 1 cut(s) 22
NmuCI GTSAC 1 cut(s) 137
NspI RCATGY 1 cut(s) 62
PkrI GCNGC 1 cut(s) 31
PspN4I GGNNCC 1 cut(s) 22
PspPI GGNCC 1 cut(s) 133
PsrI GAACNNNNNNTAC 2 cut(s) 210, 242
RseI CAYNNNNRTG 1 cut(s) 90
SatI GCNGC 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 133
SduI GDGCHC 3 cut(s) 25, 153, 194
SetI ASST 4 cut(s) 46, 54, 223, 245
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 97
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 1 cut(s) 90
SmlI CTYRAG 1 cut(s) 193
SmoI CTYRAG 1 cut(s) 193
Sse9I AATT 3 cut(s) 116, 209, 230
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 2 cut(s) 101, 137
TasI AATT 3 cut(s) 116, 209, 230
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 2 cut(s) 80, 222
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 1 cut(s) 209
XceI RCATGY 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.