Rw0G023330

Uncharacterized protein K02A2.6-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01079
OG0016965
Physical Location & Seq
Reverse (-)
200038 .. 200907
870 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G023330.1

Sequence Viewer

Length: 525 bp
ATGGAAGCATCCATGAGTTGTGTCTTTGGTCAGCACGATGAAACGGGTAGGAAGGAAAGAGCCATATACTATCTCAGCAAGAAGTTCATAGATTATGAGACAAGGTATGCGTCTCTCTTTGAAAAGCCAGCCCTCACGGGCCGTACAGCAAGGTGGCAGATGTTACTCTCAGAGTTCGATATTGTTAAGGGGACGAATTCCCCGGACGAAGCTATTCTATTTGCGGTAGGCGAAGAAGAAGACGAAACTCCTCATGATTGGCAAATGTTCTTTTACGGTGCAGCGCTTCGCGCCCTCGACTTGAGAATCAAAGAGATTCATGTATATGGAAATTCGTCACTTATCATCTTTCAGACAACTGGTAATTGGAAAACCAAAGATCAGAAGCTCATTCTCTACCATCACTATCTGGAAGATATCAGCCTAAAGTTAAGACGGATTACCTTCAATTATCTGTCGAGGACGAAGAATCAGTTTGCTGACGCATTGGCCGCACTAGCTTCCATGATCAGTAGACGGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch RVT_1 RVT_3 Retrotrans_gag rve

Protein Analysis

174

Amino Acids

20.34

Weight (kDa)

6.97

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 98 - 166 7.5e-08 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 514
AccII CGCG 1 cut(s) 291
AciI CCGC 2 cut(s) 224, 492
AcoI YGGCCR 1 cut(s) 489
AcsI RAATTY 2 cut(s) 196, 331
AfaI GTAC 1 cut(s) 145
AfeI AGCGCT 1 cut(s) 285
AgsI TTSAA 2 cut(s) 122, 448
AluBI AGCT 3 cut(s) 212, 388, 500
AluI AGCT 3 cut(s) 212, 388, 500
Alw26I GTCTC 2 cut(s) 92, 117
Aor51HI AGCGCT 1 cut(s) 285
AoxI GGCC 2 cut(s) 139, 489
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 2 cut(s) 196, 331
Asp700I GAANNNNTTC 1 cut(s) 213
AspLEI GCGC 2 cut(s) 286, 293
AspS9I GGNCC 1 cut(s) 139
AsuC2I CCSGG 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 246
BbvI GCAGC 1 cut(s) 293
BccI CCATC 1 cut(s) 408
BceAI ACGGC 1 cut(s) 126
BclI TGATCA 1 cut(s) 507
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 2 cut(s) 92, 117
BfaI CTAG 1 cut(s) 497
BfoI RGCGCY 1 cut(s) 287
BisI GCNGC 2 cut(s) 282, 492
BlsI GCNGC 2 cut(s) 283, 493
Bme1390I CCNGG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 17
BpiI GAAGAC 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 322
BpuMI CCSGG 1 cut(s) 203
BsaJI CCNNGG 1 cut(s) 201
Bse1I ACTGG 1 cut(s) 364
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 1 cut(s) 8
BseMII CTCAG 2 cut(s) 88, 183
BseNI ACTGG 1 cut(s) 364
BseRI GAGGAG 1 cut(s) 240
BseXI GCAGC 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 291
BshFI GGCC 2 cut(s) 141, 491
BsiSI CCGG 1 cut(s) 203
BslFI GGGAC 1 cut(s) 205
BsmAI GTCTC 2 cut(s) 92, 117
BsmBI CGTCTC 1 cut(s) 117
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 2 cut(s) 141, 491
Bsp143I GATC 2 cut(s) 379, 507
BspACI CCGC 2 cut(s) 224, 492
BspANI GGCC 2 cut(s) 141, 491
BspCNI CTCAG 2 cut(s) 87, 182
BspFNI CGCG 1 cut(s) 291
BspHI TCATGA 1 cut(s) 253
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 2 cut(s) 379, 507
Bst4CI ACNGT 2 cut(s) 278, 519
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 74, 169
BstF5I GGATG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 291
BstH2I RGCGCY 1 cut(s) 287
BstHHI GCGC 2 cut(s) 286, 293
BstKTI GATC 2 cut(s) 382, 510
BstMAI GTCTC 2 cut(s) 92, 117
BstMBI GATC 2 cut(s) 379, 507
BstMWI GCNNNNNNNGC 3 cut(s) 290, 491, 497
BstSCI CCNGG 1 cut(s) 201
BstUI CGCG 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 293
BstV2I GAAGAC 1 cut(s) 246
BsuRI GGCC 2 cut(s) 141, 491
BtsCI GGATG 1 cut(s) 8
Cac8I GCNNGC 1 cut(s) 129
CciI TCATGA 1 cut(s) 253
CfoI GCGC 2 cut(s) 286, 293
Cfr13I GGNCC 1 cut(s) 139
CseI GACGC 2 cut(s) 99, 491
Csp6I GTAC 1 cut(s) 144
CviAII CATG 4 cut(s) 13, 254, 320, 505
CviJI RGCY 9 cut(s) 62, 127, 131, 141, 212, 388, 423, 491, 500
CviKI_1 RGCY 9 cut(s) 62, 127, 131, 141, 212, 388, 423, 491, 500
CviQI GTAC 1 cut(s) 144
DdeI CTNAG 2 cut(s) 74, 169
DpnI GATC 2 cut(s) 381, 509
DpnII GATC 2 cut(s) 379, 507
EaeI YGGCCR 1 cut(s) 489
Eco32I GATATC 1 cut(s) 418
Eco47III AGCGCT 1 cut(s) 285
EcoRI GAATTC 1 cut(s) 196
EcoRV GATATC 1 cut(s) 418
Esp3I CGTCTC 1 cut(s) 117
FaeI CATG 4 cut(s) 16, 257, 323, 508
FaqI GGGAC 1 cut(s) 205
FatI CATG 4 cut(s) 12, 253, 319, 504
FbaI TGATCA 1 cut(s) 507
FblI GTMKAC 1 cut(s) 514
Fnu4HI GCNGC 2 cut(s) 282, 492
Fsp4HI GCNGC 2 cut(s) 282, 492
FspBI CTAG 1 cut(s) 497
GlaI GCGC 2 cut(s) 285, 292
GluI GCNGC 2 cut(s) 282, 492
HaeII RGCGCY 1 cut(s) 287
HaeIII GGCC 2 cut(s) 141, 491
HapII CCGG 1 cut(s) 203
HgaI GACGC 2 cut(s) 99, 491
HhaI GCGC 2 cut(s) 286, 293
Hin1II CATG 4 cut(s) 16, 257, 323, 508
Hin6I GCGC 2 cut(s) 284, 291
HinP1I GCGC 2 cut(s) 284, 291
HinfI GANTC 3 cut(s) 306, 316, 469
HpaII CCGG 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 515
Hpy188I TCNGA 3 cut(s) 172, 354, 384
Hpy188III TCNNGA 2 cut(s) 254, 410
Hpy8I GTNNAC 1 cut(s) 515
HpyAV CCTTC 2 cut(s) 46, 454
HpyCH4III ACNGT 2 cut(s) 278, 519
HpyCH4V TGCA 1 cut(s) 281
HpyF10VI GCNNNNNNNGC 3 cut(s) 290, 491, 497
HpyF3I CTNAG 2 cut(s) 74, 169
Hsp92II CATG 4 cut(s) 16, 257, 323, 508
HspAI GCGC 2 cut(s) 284, 291
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 2 cut(s) 379, 507
LpnPI CCDG 4 cut(s) 141, 216, 345, 395
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 1 cut(s) 17
MaeI CTAG 1 cut(s) 497
MaeIII GTNAC 2 cut(s) 162, 336
MalI GATC 2 cut(s) 381, 509
MboI GATC 2 cut(s) 379, 507
MboII GAAGA 5 cut(s) 245, 248, 251, 425, 478
MluCI AATT 4 cut(s) 196, 331, 364, 448
MnlI CCTC 4 cut(s) 143, 261, 305, 453
MroXI GAANNNNTTC 1 cut(s) 213
MseI TTAA 2 cut(s) 186, 431
MslI CAYNNNNRTG 1 cut(s) 324
MspI CCGG 1 cut(s) 203
MspR9I CCNGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 290, 491, 497
NciI CCSGG 1 cut(s) 203
NdeII GATC 2 cut(s) 379, 507
NlaIII CATG 4 cut(s) 16, 257, 323, 508
NmuCI GTSAC 1 cut(s) 336
PagI TCATGA 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 213
PfeI GAWTC 3 cut(s) 306, 316, 469
PkrI GCNGC 2 cut(s) 283, 493
PspPI GGNCC 1 cut(s) 139
RsaI GTAC 1 cut(s) 145
RsaNI GTAC 1 cut(s) 144
RseI CAYNNNNRTG 1 cut(s) 324
SaqAI TTAA 2 cut(s) 186, 431
SatI GCNGC 2 cut(s) 282, 492
Sau3AI GATC 2 cut(s) 379, 507
Sau96I GGNCC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 203
SetI ASST 6 cut(s) 107, 155, 214, 390, 446, 502
SfaNI GCATC 1 cut(s) 17
SmiMI CAYNNNNRTG 1 cut(s) 324
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 4 cut(s) 196, 331, 364, 448
SsiI CCGC 2 cut(s) 224, 492
SspMI CTAG 1 cut(s) 497
StyD4I CCNGG 1 cut(s) 201
TaaI ACNGT 2 cut(s) 278, 519
TaqI TCGA 3 cut(s) 177, 297, 458
TasI AATT 4 cut(s) 196, 331, 364, 448
TauI GCSGC 1 cut(s) 494
TfiI GAWTC 3 cut(s) 306, 316, 469
Tru1I TTAA 2 cut(s) 186, 431
Tru9I TTAA 2 cut(s) 186, 431
TseFI GTSAC 1 cut(s) 336
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 336
TspDTI ATGAA 3 cut(s) 54, 76, 308
TspGWI ACGGA 1 cut(s) 451
XapI RAATTY 2 cut(s) 196, 331
XmiI GTMKAC 1 cut(s) 514
XmnI GAANNNNTTC 1 cut(s) 213
XspI CTAG 1 cut(s) 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.