Rw3G011350

Selenium-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0016965
Physical Location & Seq
Forward (+)
11022493 .. 11022807
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G011350.1

Sequence Viewer

Length: 315 bp
ATGATAAGCACATCATGGGGTGCCCCCGCTGCTTTCACCAAAGGTTTCAACCTTCAGCATGTCTCTGATGGTCTCTATGGGAGGCATCTTCATGTCTACAGTTGGCCTGAGGGTGAATTGAAACAAACTTTGGATCTTCGCAATGCAGGACTCTTACCCTTGGAGGTGAGTAGTATAAAACTGATCGCAGTCATTAATTTTTACAATATAATGATGGAACAAATTTTCTACACTAAAGTTTCAGTCTTGATTTCAATTGGGTACTTTAGCTTTTGTTCTTTGATTTCTGCTAATTTATGCAATTGGGTTATATAG

Protein Analysis

104

Amino Acids

11.7

Weight (kDa)

6.81

Isoelectric Point (pI)

28.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBP56 PF05694 1 - 57 1.8e-16 56kDa selenium binding protein (SBP56)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AccI GTMKAC 1 cut(s) 96
AciI CCGC 1 cut(s) 27
AclWI GGATC 1 cut(s) 141
AcsI RAATTY 1 cut(s) 222
AcuI CTGAAG 1 cut(s) 38
AfaI GTAC 1 cut(s) 263
AgsI TTSAA 3 cut(s) 49, 121, 255
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AluBI AGCT 1 cut(s) 270
AluI AGCT 1 cut(s) 270
Alw26I GTCTC 2 cut(s) 67, 77
AlwI GGATC 1 cut(s) 141
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 29
ApoI RAATTY 1 cut(s) 222
AseI ATTAAT 1 cut(s) 195
AsuHPI GGTGA 3 cut(s) 28, 125, 178
AxyI CCTNAGG 1 cut(s) 108
BaeGI GKGCMC 1 cut(s) 25
BanI GGYRCC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 16
BccI CCATC 2 cut(s) 62, 208
BcoDI GTCTC 2 cut(s) 67, 77
BfmI CTRYAG 1 cut(s) 97
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
BmiI GGNNCC 1 cut(s) 22
BmsI GCATC 1 cut(s) 94
BsaI GGTCTC 1 cut(s) 77
BsaJI CCNNGG 1 cut(s) 159
Bse21I CCTNAGG 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 148
BseDI CCNNGG 1 cut(s) 159
BseMI GCAATG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 25
BseXI GCAGC 1 cut(s) 16
BshFI GGCC 1 cut(s) 106
BshNI GGYRCC 1 cut(s) 20
BsmAI GTCTC 2 cut(s) 67, 77
BsnI GGCC 1 cut(s) 106
Bso31I GGTCTC 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 25
Bsp143I GATC 2 cut(s) 133, 183
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 22
BspPI GGATC 1 cut(s) 141
BspT107I GGYRCC 1 cut(s) 20
BspTNI GGTCTC 1 cut(s) 77
BsrDI GCAATG 1 cut(s) 148
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 2 cut(s) 133, 183
BssT1I CCWWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 108
BstKTI GATC 2 cut(s) 136, 186
BstMAI GTCTC 2 cut(s) 67, 77
BstMBI GATC 2 cut(s) 133, 183
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 62
BstSFI CTRYAG 1 cut(s) 97
BstSLI GKGCMC 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
Bsu36I CCTNAGG 1 cut(s) 108
BsuRI GGCC 1 cut(s) 106
Csp6I GTAC 1 cut(s) 262
CviAII CATG 3 cut(s) 15, 59, 92
CviJI RGCY 2 cut(s) 106, 270
CviKI_1 RGCY 2 cut(s) 106, 270
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 1 cut(s) 108
DpnI GATC 2 cut(s) 135, 185
DpnII GATC 2 cut(s) 133, 183
Eco130I CCWWGG 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 38
Eco81I CCTNAGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 3 cut(s) 18, 62, 95
FaiI YATR 9 cut(s) 16, 60, 78, 93, 176, 209, 298, 311, 313
FatI CATG 3 cut(s) 14, 58, 91
FauI CCCGC 1 cut(s) 34
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 1 cut(s) 30
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HaeIII GGCC 1 cut(s) 106
Hin1II CATG 3 cut(s) 18, 62, 95
HinfI GANTC 1 cut(s) 150
HphI GGTGA 3 cut(s) 28, 125, 178
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 247
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 62
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4V TGCA 2 cut(s) 146, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 1 cut(s) 108
Hsp92II CATG 3 cut(s) 18, 62, 95
Kzo9I GATC 2 cut(s) 133, 183
LpnPI CCDG 2 cut(s) 120, 132
Lsp1109I GCAGC 1 cut(s) 16
LweI GCATC 1 cut(s) 94
MalI GATC 2 cut(s) 135, 185
MboI GATC 2 cut(s) 133, 183
MboII GAAGA 2 cut(s) 80, 128
MfeI CAATTG 2 cut(s) 255, 301
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 1 cut(s) 25
MluCI AATT 6 cut(s) 116, 196, 222, 255, 292, 301
MlyI GAGTC 1 cut(s) 144
MnlI CCTC 3 cut(s) 75, 103, 157
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 90
MspA1I CMGCKG 1 cut(s) 29
MunI CAATTG 2 cut(s) 255, 301
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 2 cut(s) 133, 183
NlaIII CATG 3 cut(s) 18, 62, 95
NlaIV GGNNCC 1 cut(s) 22
NspI RCATGY 1 cut(s) 62
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
PshBI ATTAAT 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 22
PsuI RGATCY 1 cut(s) 133
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 2 cut(s) 133, 183
SchI GAGTC 1 cut(s) 144
SduI GDGCHC 1 cut(s) 25
SetI ASST 4 cut(s) 46, 54, 168, 272
SfaNI GCATC 1 cut(s) 94
SfcI CTRYAG 1 cut(s) 97
SgeI CNNG 8 cut(s) 27, 38, 71, 104, 119, 159, 172, 259
SmiMI CAYNNNNRTG 1 cut(s) 90
Sse9I AATT 6 cut(s) 116, 196, 222, 255, 292, 301
SsiI CCGC 1 cut(s) 27
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 1 cut(s) 101
TasI AATT 6 cut(s) 116, 196, 222, 255, 292, 301
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 80
VspI ATTAAT 1 cut(s) 195
XapI RAATTY 1 cut(s) 222
XceI RCATGY 1 cut(s) 62
XmiI GTMKAC 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.