Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0016965

Physical Location & Seq

Genomic Coordinates Forward (+)

64335633 .. 64347437

Gene Structure 11805 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G041310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCTACGGCATATAGATCTGACTGGTTCACGATACTTGATGTCGACTCCAGACTTCACGGAGGTTCCTGATCTTGAAGAGTTAGTGCTTGTCGGTTGCAGCTTGGTGGAGATTCACCCGTCTCTTGGATTTCTGAAGAAACTTGTTATTTTGGATATGTCATCTTGCAACATTGAGACCATTCCACCTTTCATTACCTTGGAATCCCTTCAAATATTGAGGCTTTCAAACTGCTCAGGATTGAAGAAGTTACCAGAAATTGAAGGAAATATGGAAAGCTTGCTGGAGCTTCATTTGGATAGGACCAAGATAGAGGAGTTGCCCCCATCAATTGAACGCTTGACTGGTCTAACAATGTTGAATCTAACAGGTTGTACAAACCTTTTGCATCTCCCCAATACCATTCTGTGCTTGACATCTTTGAAAAGTCTCGATCTATTTGCTTGCTTCAAAATTGATGAGATTCCTGGGAATCTGAATGGCATGAAGAATCTACGGTATCTATACTGCCGAGGATGTGAATGTCTAGTTTCAGAATCATACAAAGCTCTGGCTTCGTTATCGAATTTGATAGAGCTAGACTTGAGTGATTGCAATCTGATGGATGGAGCAATTCTCAATAATTTAAGCAGCCTAATCTCCCTAAGATGGTTATATTTATGTGGTAATGGCTTTGTACTCTTACCTGAAAGCATCTATCAACTCCCAGAGCTCGAGATTCTGGACTTGACTCGCTGCAGACAGCTTCAATTGCTGCCCAAGAAGGATTACCCAAATCAAATCAAATTATTGAATCCAGCGGAGTCAGAAATGATGTTCTATGCATCTCGTTTGGGGGTTCGAGAGGGCGGAGGCACCGTCTCTGGGGTTGGACAGTATCTCAAATCTCAAAACCTTGATTGTAAGGTGATAGAGGCTGATAATGTTATGGGCTCAAGTAGGGTTGATGAAGATGCTGAACCCATTTTACAATATGGACACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

328

Amino Acids

36.66

Weight (kDa)

4.87

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	34 - 193	1.2e-13	Leucine-rich repeat region
LRR_13	PF23286	67 - 255	1.4e-11	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	183 - 254	3.3e-08	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016965)

Species	Orthologous Gene IDs
pyrus_communis	pycom12401g00260
rosa_chinensis	RchiOBHm_Chr6g0281301 RchiOBHm_Chr7g0214141
rosa_multiflora	Rmu_sc0000650.1_g000021 Rmu_sc0001397.1_g000001 Rmu_ssc0000420.1_g000007
rosa_rugosa	Rorug03G0054400
rosa_samantha	Rh1CG223200 Rh4BG158500 Rh6BG016200 Rh6DG246900
rosa_wichuraiana	Rw0G023330 Rw3G011350 Rw7G041310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	854
AccI	GTMKAC	1 cut(s)	44
AciI	CCGC	2 cut(s)	800, 849
AcsI	RAATTY	1 cut(s)	565
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	2 cut(s)	376, 678
AfiI	CCNNNNNNNGG	3 cut(s)	125, 648, 864
AjnI	CCWGG	1 cut(s)	466
AluBI	AGCT	7 cut(s)	102, 279, 289, 548, 577, 712, 745
AluI	AGCT	7 cut(s)	102, 279, 289, 548, 577, 712, 745
Alw21I	GWGCWC	1 cut(s)	714
Alw26I	GTCTC	4 cut(s)	126, 170, 434, 865
Ama87I	CYCGRG	1 cut(s)	713
ApeKI	GCWGC	4 cut(s)	99, 630, 735, 754
ApoI	RAATTY	1 cut(s)	565
Asp700I	GAANNNNTTC	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	303
AsuHPI	GGTGA	2 cut(s)	107, 919
AvaI	CYCGRG	1 cut(s)	713
AvaII	GGWCC	1 cut(s)	303
BanI	GGYRCC	1 cut(s)	854
BanII	GRGCYC	2 cut(s)	714, 935
Bbv12I	GWGCWC	1 cut(s)	714
BbvI	GCAGC	4 cut(s)	111, 642, 722, 741
BccI	CCATC	4 cut(s)	334, 595, 599, 642
BceAI	ACGGC	1 cut(s)	23
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BciT130I	CCWGG	1 cut(s)	468
BcoDI	GTCTC	4 cut(s)	126, 170, 434, 865
BfaI	CTAG	2 cut(s)	527, 578
BfmI	CTRYAG	1 cut(s)	736
BglII	AGATCT	1 cut(s)	16
BisI	GCNGC	4 cut(s)	100, 631, 736, 755
BlsI	GCNGC	4 cut(s)	101, 632, 737, 756
Bme1390I	CCNGG	1 cut(s)	468
Bme18I	GGWCC	1 cut(s)	303
BmeT110I	CYCGRG	1 cut(s)	713
BmgT120I	GGNCC	1 cut(s)	303
BmiI	GGNNCC	2 cut(s)	66, 856
BmrFI	CCNGG	1 cut(s)	468
BmsI	GCATC	4 cut(s)	397, 702, 833, 943
BplI	GAGNNNNNCTC	2 cut(s)	600, 632
BpmI	CTGGAG	2 cut(s)	33, 305
Bpu10I	CCTNAGC	1 cut(s)	235
BpuEI	CTTGAG	2 cut(s)	604, 919
BsaBI	GATNNNNATC	1 cut(s)	594
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	3 cut(s)	198, 467, 511
BsaXI	ACNNNNNCTCC	2 cut(s)	843, 873
Bsc4I	CCNNNNNNNGG	3 cut(s)	125, 648, 864
Bse1I	ACTGG	2 cut(s)	28, 349
Bse8I	GATNNNNATC	1 cut(s)	594
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	3 cut(s)	198, 467, 511
BseGI	GGATG	2 cut(s)	521, 610
BseJI	GATNNNNATC	1 cut(s)	594
BseLI	CCNNNNNNNGG	3 cut(s)	125, 648, 864
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	28, 349
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	4 cut(s)	111, 642, 722, 741
BshNI	GGYRCC	1 cut(s)	854
BsiHKAI	GWGCWC	1 cut(s)	714
BsiHKCI	CYCGRG	1 cut(s)	713
BslI	CCNNNNNNNGG	3 cut(s)	125, 648, 864
BsmAI	GTCTC	4 cut(s)	126, 170, 434, 865
BsmBI	CGTCTC	2 cut(s)	126, 865
Bso31I	GGTCTC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	713
Bsp1286I	GDGCHC	2 cut(s)	714, 935
Bsp1407I	TGTACA	1 cut(s)	374
Bsp143I	GATC	3 cut(s)	16, 70, 433
BspACI	CCGC	2 cut(s)	800, 849
BspCNI	CTCAG	1 cut(s)	248
BspLI	GGNNCC	2 cut(s)	66, 856
BspMAI	CTGCAG	1 cut(s)	740
BspT107I	GGYRCC	1 cut(s)	854
BspTNI	GGTCTC	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	374
BsrI	ACTGG	2 cut(s)	28, 349
BssECI	CCNNGG	3 cut(s)	198, 467, 511
BssMI	GATC	3 cut(s)	16, 70, 433
BssT1I	CCWWGG	1 cut(s)	198
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	3 cut(s)	498, 859, 876
Bst6I	CTCTTC	1 cut(s)	72
BstAUI	TGTACA	1 cut(s)	374
BstC8I	GCNNGC	2 cut(s)	281, 445
BstDEI	CTNAG	2 cut(s)	235, 644
BstF5I	GGATG	2 cut(s)	521, 610
BstKTI	GATC	3 cut(s)	19, 73, 436
BstMAI	GTCTC	4 cut(s)	126, 170, 434, 865
BstMBI	GATC	3 cut(s)	16, 70, 433
BstMWI	GCNNNNNNNGC	1 cut(s)	751
BstNI	CCWGG	1 cut(s)	468
BstSCI	CCNGG	1 cut(s)	466
BstSFI	CTRYAG	1 cut(s)	736
BstV1I	GCAGC	4 cut(s)	111, 642, 722, 741
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	521, 610
Cac8I	GCNNGC	2 cut(s)	281, 445
Cfr13I	GGNCC	1 cut(s)	303
Csp6I	GTAC	2 cut(s)	375, 677
CviAII	CATG	1 cut(s)	484
CviQI	GTAC	2 cut(s)	375, 677
DdeI	CTNAG	2 cut(s)	235, 644
DpnI	GATC	3 cut(s)	18, 72, 435
DpnII	GATC	3 cut(s)	16, 70, 433
Eam1104I	CTCTTC	1 cut(s)	72
EarI	CTCTTC	1 cut(s)	72
EciI	GGCGGA	1 cut(s)	864
Ecl136II	GAGCTC	1 cut(s)	712
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	2 cut(s)	714, 935
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	712
Eco57I	CTGAAG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	713
EcoICRI	GAGCTC	1 cut(s)	712
EcoRII	CCWGG	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	198
EcoT22I	ATGCAT	1 cut(s)	826
EcoT38I	GRGCYC	2 cut(s)	714, 935
ErhI	CCWWGG	1 cut(s)	198
Esp3I	CGTCTC	2 cut(s)	126, 865
FaeI	CATG	1 cut(s)	487
FatI	CATG	1 cut(s)	483
FblI	GTMKAC	1 cut(s)	44
Fnu4HI	GCNGC	4 cut(s)	100, 631, 736, 755
FokI	GGATG	2 cut(s)	528, 617
FriOI	GRGCYC	2 cut(s)	714, 935
Fsp4HI	GCNGC	4 cut(s)	100, 631, 736, 755
FspBI	CTAG	2 cut(s)	527, 578
GluI	GCNGC	4 cut(s)	100, 631, 736, 755
GsuI	CTGGAG	2 cut(s)	33, 305
Hin1II	CATG	1 cut(s)	487
HincII	GTYRAC	1 cut(s)	45
HindII	GTYRAC	1 cut(s)	45
HindIII	AAGCTT	1 cut(s)	277
HphI	GGTGA	2 cut(s)	107, 919
Hpy166II	GTNNAC	2 cut(s)	29, 45
Hpy188I	TCNGA	6 cut(s)	21, 135, 477, 535, 600, 808
Hpy188III	TCNNGA	9 cut(s)	30, 50, 68, 74, 237, 431, 715, 722, 842
Hpy8I	GTNNAC	2 cut(s)	29, 45
HpyAV	CCTTC	3 cut(s)	218, 257, 757
HpyCH4III	ACNGT	3 cut(s)	498, 859, 876
HpyCH4V	TGCA	6 cut(s)	99, 168, 388, 594, 738, 824
HpyF10VI	GCNNNNNNNGC	1 cut(s)	751
HpyF3I	CTNAG	2 cut(s)	235, 644
Hsp92II	CATG	1 cut(s)	487
Kzo9I	GATC	3 cut(s)	16, 70, 433
LmnI	GCTCC	2 cut(s)	286, 608
Lsp1109I	GCAGC	4 cut(s)	111, 642, 722, 741
LweI	GCATC	4 cut(s)	397, 702, 833, 943
MaeI	CTAG	2 cut(s)	527, 578
MaeIII	GTNAC	1 cut(s)	249
MalI	GATC	3 cut(s)	18, 72, 435
MboI	GATC	3 cut(s)	16, 70, 433
MboII	GAAGA	5 cut(s)	89, 148, 256, 499, 962
MfeI	CAATTG	2 cut(s)	330, 749
MflI	RGATCY	1 cut(s)	16
MhlI	GDGCHC	2 cut(s)	714, 935
MluCI	AATT	8 cut(s)	258, 330, 453, 565, 612, 622, 749, 785
MlyI	GAGTC	3 cut(s)	40, 724, 812
MmeI	TCCRAC	1 cut(s)	850
MnlI	CCTC	7 cut(s)	55, 213, 307, 506, 838, 845, 907
Mph1103I	ATGCAT	1 cut(s)	826
MroXI	GAANNNNTTC	1 cut(s)	207
MseI	TTAA	1 cut(s)	626
MspA1I	CMGCKG	1 cut(s)	800
MspR9I	CCNGG	1 cut(s)	468
MunI	CAATTG	2 cut(s)	330, 749
MvaI	CCWGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	1 cut(s)	751
NdeII	GATC	3 cut(s)	16, 70, 433
NlaIII	CATG	1 cut(s)	487
NlaIV	GGNNCC	2 cut(s)	66, 856
NmeAIII	GCCGAG	1 cut(s)	536
NsiI	ATGCAT	1 cut(s)	826
PaeR7I	CTCGAG	1 cut(s)	713
PdmI	GAANNNNTTC	1 cut(s)	207
PfeI	GAWTC	9 cut(s)	112, 203, 361, 463, 472, 490, 536, 718, 793
PkrI	GCNGC	4 cut(s)	101, 632, 737, 756
PleI	GAGTC	3 cut(s)	40, 724, 811
PpsI	GAGTC	3 cut(s)	40, 724, 811
Psp124BI	GAGCTC	1 cut(s)	714
Psp6I	CCWGG	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	2 cut(s)	66, 856
PspPI	GGNCC	1 cut(s)	303
PsrI	GAACNNNNNNTAC	2 cut(s)	951, 983
PstI	CTGCAG	1 cut(s)	740
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	2 cut(s)	376, 678
RsaNI	GTAC	2 cut(s)	375, 677
SacI	GAGCTC	1 cut(s)	714
SalI	GTCGAC	1 cut(s)	43
SaqAI	TTAA	1 cut(s)	626
SatI	GCNGC	4 cut(s)	100, 631, 736, 755
Sau3AI	GATC	3 cut(s)	16, 70, 433
Sau96I	GGNCC	1 cut(s)	303
SchI	GAGTC	3 cut(s)	40, 724, 812
ScrFI	CCNGG	1 cut(s)	468
SduI	GDGCHC	2 cut(s)	714, 935
SfaNI	GCATC	4 cut(s)	397, 702, 833, 943
SfcI	CTRYAG	1 cut(s)	736
Sfr274I	CTCGAG	1 cut(s)	713
SinI	GGWCC	1 cut(s)	303
SlaI	CTCGAG	1 cut(s)	713
SmlI	CTYRAG	3 cut(s)	583, 713, 934
SmoI	CTYRAG	3 cut(s)	583, 713, 934
Sse9I	AATT	8 cut(s)	258, 330, 453, 565, 612, 622, 749, 785
SsiI	CCGC	2 cut(s)	800, 849
SspI	AATATT	1 cut(s)	216
SspMI	CTAG	2 cut(s)	527, 578
SstI	GAGCTC	1 cut(s)	714
StyD4I	CCNGG	1 cut(s)	466
StyI	CCWWGG	1 cut(s)	198
TaaI	ACNGT	3 cut(s)	498, 859, 876
TaqI	TCGA	5 cut(s)	44, 432, 563, 714, 841
TasI	AATT	8 cut(s)	258, 330, 453, 565, 612, 622, 749, 785
TatI	WGTACW	2 cut(s)	374, 676
TfiI	GAWTC	9 cut(s)	112, 203, 361, 463, 472, 490, 536, 718, 793
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TseI	GCWGC	4 cut(s)	99, 630, 735, 754
TspDTI	ATGAA	4 cut(s)	181, 281, 500, 963
TspGWI	ACGGA	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	303
XapI	RAATTY	1 cut(s)	565
XhoI	CTCGAG	1 cut(s)	713
XmiI	GTMKAC	1 cut(s)	44
XmnI	GAANNNNTTC	1 cut(s)	207
XspI	CTAG	2 cut(s)	527, 578
Zsp2I	ATGCAT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.