Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0016965

Physical Location & Seq

Genomic Coordinates Reverse (-)

43358692 .. 43359722

Gene Structure 1031 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG246900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGAAGAATCAGTTTGCTGATGCATTGGCCACACTAGTTTCCATGATCAGTAGACGCGGAGGCACCGTCTCTAGGGTTGGACAGTATCTCAAATCTCAAAACCTTGATTGTAAGGTGATAGAGCCTGATAATGTTATGGGCTCAAGTAGGGTTGATGAAGATGCTGAACCCATTTTACAATATGGACACAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003983 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006011 GO:0006082 GO:0006139 GO:0006629 GO:0006725 GO:0006790 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009225 GO:0009226 GO:0009507 GO:0009536 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0034641 GO:0034654 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046505 GO:0046506 GO:0051748 GO:0055086 GO:0070569 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UDPGP

Protein Analysis

64

Amino Acids

7.1

Weight (kDa)

6.53

Isoelectric Point (pI)

42.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016965)

Species	Orthologous Gene IDs
pyrus_communis	pycom12401g00260
rosa_chinensis	RchiOBHm_Chr6g0281301 RchiOBHm_Chr7g0214141
rosa_multiflora	Rmu_sc0000650.1_g000021 Rmu_sc0001397.1_g000001 Rmu_ssc0000420.1_g000007
rosa_rugosa	Rorug03G0054400
rosa_samantha	Rh1CG223200 Rh4BG158500 Rh6BG016200 Rh6DG246900
rosa_wichuraiana	Rw0G023330 Rw3G011350 Rw7G041310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	52
AccII	CGCG	1 cut(s)	57
AciI	CCGC	1 cut(s)	57
AcoI	YGGCCR	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	72
AhlI	ACTAGT	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	73
AoxI	GGCC	1 cut(s)	27
AsuHPI	GGTGA	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	29
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	1 cut(s)	143
BclI	TGATCA	1 cut(s)	45
BcoDI	GTCTC	1 cut(s)	73
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	2 cut(s)	35, 72
BmiI	GGNNCC	1 cut(s)	64
BmsI	GCATC	2 cut(s)	10, 151
BpuEI	CTTGAG	1 cut(s)	127
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
BseLI	CCNNNNNNNGG	1 cut(s)	72
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	73
BsmBI	CGTCTC	1 cut(s)	73
BsnI	GGCC	1 cut(s)	29
Bsp1286I	GDGCHC	1 cut(s)	143
Bsp143I	GATC	1 cut(s)	45
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	57
BspLI	GGNNCC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	62
BssMI	GATC	1 cut(s)	45
Bst4CI	ACNGT	2 cut(s)	67, 84
BstFNI	CGCG	1 cut(s)	57
BstKTI	GATC	1 cut(s)	48
BstMAI	GTCTC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	45
BstUI	CGCG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	29
CseI	GACGC	1 cut(s)	63
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	3 cut(s)	29, 124, 141
CviKI_1	RGCY	3 cut(s)	29, 124, 141
DpnI	GATC	1 cut(s)	47
DpnII	GATC	1 cut(s)	45
EaeI	YGGCCR	1 cut(s)	27
Eco24I	GRGCYC	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	25
EcoT38I	GRGCYC	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	73
FaeI	CATG	1 cut(s)	46
FaiI	YATR	3 cut(s)	44, 137, 183
FatI	CATG	1 cut(s)	42
FbaI	TGATCA	1 cut(s)	45
FblI	GTMKAC	1 cut(s)	52
FriOI	GRGCYC	1 cut(s)	143
FspBI	CTAG	2 cut(s)	35, 72
HaeIII	GGCC	1 cut(s)	29
HgaI	GACGC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	1 cut(s)	7
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	53
HpyCH4III	ACNGT	2 cut(s)	67, 84
HpyCH4V	TGCA	1 cut(s)	23
Hsp92II	CATG	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	45
LpnPI	CCDG	2 cut(s)	138, 175
LweI	GCATC	2 cut(s)	10, 151
MaeI	CTAG	2 cut(s)	35, 72
MalI	GATC	1 cut(s)	47
MboI	GATC	1 cut(s)	45
MboII	GAAGA	2 cut(s)	16, 170
MhlI	GDGCHC	1 cut(s)	143
MlsI	TGGCCA	1 cut(s)	29
MluNI	TGGCCA	1 cut(s)	29
MmeI	TCCRAC	1 cut(s)	58
MnlI	CCTC	1 cut(s)	53
Mox20I	TGGCCA	1 cut(s)	29
Mph1103I	ATGCAT	1 cut(s)	25
MscI	TGGCCA	1 cut(s)	29
Msp20I	TGGCCA	1 cut(s)	29
MvnI	CGCG	1 cut(s)	57
NdeII	GATC	1 cut(s)	45
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	1 cut(s)	64
NsiI	ATGCAT	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	7
PspN4I	GGNNCC	1 cut(s)	64
PsrI	GAACNNNNNNTAC	2 cut(s)	159, 191
Sau3AI	GATC	1 cut(s)	45
SduI	GDGCHC	1 cut(s)	143
SetI	ASST	3 cut(s)	105, 117, 194
SfaNI	GCATC	2 cut(s)	10, 151
SgeI	CNNG	7 cut(s)	47, 55, 68, 84, 116, 137, 156
SmlI	CTYRAG	1 cut(s)	142
SmoI	CTYRAG	1 cut(s)	142
SpeI	ACTAGT	1 cut(s)	34
SsiI	CCGC	1 cut(s)	57
SspMI	CTAG	2 cut(s)	35, 72
TaaI	ACNGT	2 cut(s)	67, 84
TfiI	GAWTC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	17, 171
XmiI	GTMKAC	1 cut(s)	52
XspI	CTAG	2 cut(s)	35, 72
Zsp2I	ATGCAT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.