Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0016965

Physical Location & Seq

Genomic Coordinates Forward (+)

4194428 .. 4195275

Gene Structure 848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0054400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAAGGAGCTATCGGAGCTTTATTTAGATGAGACTGCAATTAAGGAAGTTCCCACATCAATTGAAAATCTTAAGGGACTTGTTAATTTGAACCTGAAAGGTTGCAGATATCTTGAGAATCTTCCAAGCAGCATTTGTCAACTCAAGTCCCTTAGATATGTTACTCTTTCTGGCTGTTCGAAGTTTGAGCTGTTTCCAGCAATTGTAGAAGATATGGGAGGATTAAGAGAGCTACATTTGGATGGAACATCTATCAAAGAGCTTTCCCCAACAATGAATCAACTTCATCATTTGACAGTTCTCAAATTGGAAGGGTGCAAGAGACTGAAATCAATTCCAGAGCTTTCATCAAGTATAAATTTCATAGATGCGCATAATTGTACATCTTTGGAAACAGTTTCGTCACCAAAGCCACCTTATACGAATCTTTGCTTCATATTTTCTAATTGCCTCCAGCTGGTAAATAATCCATTTAGAGATGTGGTGGAAACTCATTTAAATTATCAGGGCAATTATATGCGACCTCTTTCCTTTTCTATGTCTCTTCCTGGAAGTGAAATTCCAGAGTGGTTCAATCATCAGTCTATAGGGTCTTCAATAACTGTGAAACTACCACTAAATTTGTTTGATAATAAGTTTTTGGGCTTTGGTATATGCGGTATTACTAGTTTCAAGGGTTCTCATTATGCATCTAGACTATCAGCTCAATGTTTTTGCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000103 GO:0000302 GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006790 GO:0006950 GO:0006979 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009553 GO:0009559 GO:0009561 GO:0009636 GO:0009987 GO:0010035 GO:0010038 GO:0010197 GO:0010269 GO:0016043 GO:0030054 GO:0030154 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046686 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050896 GO:0051716 GO:0055044 GO:0070887 GO:0071241 GO:0071248 GO:0071291 GO:0071840 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SBP56

Protein Analysis

240

Amino Acids

26.86

Weight (kDa)

6.65

Isoelectric Point (pI)

38.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_13	PF23286	6 - 62	3.5e-08	Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14	PF23598	7 - 79	2e-09	Leucine-rich repeat region
C-JID	PF20160	182 - 228	2.4e-15	C-JID domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0016965)

Species	Orthologous Gene IDs
pyrus_communis	pycom12401g00260
rosa_chinensis	RchiOBHm_Chr6g0281301 RchiOBHm_Chr7g0214141
rosa_multiflora	Rmu_sc0000650.1_g000021 Rmu_sc0001397.1_g000001 Rmu_ssc0000420.1_g000007
rosa_rugosa	Rorug03G0054400
rosa_samantha	Rh1CG223200 Rh4BG158500 Rh6BG016200 Rh6DG246900
rosa_wichuraiana	Rw0G023330 Rw3G011350 Rw7G041310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	372
AciI	CCGC	1 cut(s)	657
AcsI	RAATTY	3 cut(s)	358, 558, 619
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	457
AflII	CTTAAG	1 cut(s)	71
AgsI	TTSAA	5 cut(s)	65, 91, 574, 597, 673
AhlI	ACTAGT	1 cut(s)	665
AjnI	CCWGG	1 cut(s)	547
AluBI	AGCT	8 cut(s)	10, 19, 190, 232, 262, 343, 457, 704
AluI	AGCT	8 cut(s)	10, 19, 190, 232, 262, 343, 457, 704
Alw26I	GTCTC	3 cut(s)	26, 316, 546
ApeKI	GCWGC	1 cut(s)	129
ApoI	RAATTY	3 cut(s)	358, 558, 619
AspLEI	GCGC	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	396
AsuII	TTCGAA	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	1 cut(s)	236
BciT130I	CCWGG	1 cut(s)	549
BcoDI	GTCTC	3 cut(s)	26, 316, 546
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	2 cut(s)	666, 693
BfmI	CTRYAG	1 cut(s)	585
BfrI	CTTAAG	1 cut(s)	71
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	549
BmrFI	CCNGG	1 cut(s)	549
BmsI	GCATC	2 cut(s)	358, 698
BpiI	GAAGAC	1 cut(s)	585
BpmI	CTGGAG	1 cut(s)	437
Bpu14I	TTCGAA	1 cut(s)	179
BpuEI	CTTGAG	2 cut(s)	128, 134
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
BseBI	CCWGG	1 cut(s)	549
BseGI	GGATG	1 cut(s)	247
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseXI	GCAGC	1 cut(s)	141
BslFI	GGGAC	2 cut(s)	90, 133
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	3 cut(s)	26, 316, 546
BsmFI	GGGAC	2 cut(s)	90, 133
Bsp119I	TTCGAA	1 cut(s)	179
Bsp1407I	TGTACA	1 cut(s)	380
BspACI	CCGC	1 cut(s)	657
BspT104I	TTCGAA	1 cut(s)	179
BspTI	CTTAAG	1 cut(s)	71
BsrGI	TGTACA	1 cut(s)	380
Bst2UI	CCWGG	1 cut(s)	549
Bst4CI	ACNGT	3 cut(s)	298, 397, 604
Bst6I	CTCTTC	1 cut(s)	549
BstAFI	CTTAAG	1 cut(s)	71
BstAUI	TGTACA	1 cut(s)	380
BstBI	TTCGAA	1 cut(s)	179
BstDEI	CTNAG	1 cut(s)	152
BstF5I	GGATG	1 cut(s)	247
BstHHI	GCGC	1 cut(s)	373
BstMAI	GTCTC	3 cut(s)	26, 316, 546
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNI	CCWGG	1 cut(s)	549
BstSCI	CCNGG	1 cut(s)	547
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	247
CfoI	GCGC	1 cut(s)	373
Csp6I	GTAC	1 cut(s)	381
CspCI	CAANNNNNGTGG	4 cut(s)	43, 78, 603, 638
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	1 cut(s)	152
DraI	TTTAAA	1 cut(s)	498
Eam1104I	CTCTTC	1 cut(s)	549
EarI	CTCTTC	1 cut(s)	549
Eco32I	GATATC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	547
EcoRV	GATATC	1 cut(s)	110
EcoT22I	ATGCAT	1 cut(s)	691
FaqI	GGGAC	2 cut(s)	90, 133
Fnu4HI	GCNGC	1 cut(s)	130
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	1 cut(s)	130
FspAI	RTGCGCAY	1 cut(s)	372
FspBI	CTAG	2 cut(s)	666, 693
FspI	TGCGCA	1 cut(s)	372
GlaI	GCGC	1 cut(s)	372
GluI	GCNGC	1 cut(s)	130
GsuI	CTGGAG	1 cut(s)	437
HhaI	GCGC	1 cut(s)	373
Hin6I	GCGC	1 cut(s)	371
HinP1I	GCGC	1 cut(s)	371
HincII	GTYRAC	1 cut(s)	140
HindII	GTYRAC	1 cut(s)	140
HinfI	GANTC	3 cut(s)	118, 277, 424
HphI	GGTGA	1 cut(s)	396
Hpy166II	GTNNAC	1 cut(s)	140
Hpy188I	TCNGA	2 cut(s)	16, 722
Hpy188III	TCNNGA	4 cut(s)	113, 338, 563, 693
Hpy8I	GTNNAC	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	3 cut(s)	298, 397, 604
HpyCH4V	TGCA	5 cut(s)	38, 105, 318, 689, 717
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	152
HspAI	GCGC	1 cut(s)	371
LmnI	GCTCC	2 cut(s)	7, 16
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	2 cut(s)	358, 698
MaeI	CTAG	2 cut(s)	666, 693
MaeIII	GTNAC	2 cut(s)	160, 402
MboII	GAAGA	4 cut(s)	113, 221, 536, 585
MfeI	CAATTG	2 cut(s)	60, 201
MnlI	CCTC	3 cut(s)	212, 461, 534
Mph1103I	ATGCAT	1 cut(s)	691
MseI	TTAA	5 cut(s)	42, 72, 84, 224, 497
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	457
MspCI	CTTAAG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	549
MunI	CAATTG	2 cut(s)	60, 201
MvaI	CCWGG	1 cut(s)	549
MwoI	GCNNNNNNNGC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	402
NsbI	TGCGCA	1 cut(s)	372
NsiI	ATGCAT	1 cut(s)	691
NspV	TTCGAA	1 cut(s)	179
PfeI	GAWTC	3 cut(s)	118, 277, 424
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	1 cut(s)	131
Psp6I	CCWGG	1 cut(s)	547
PspGI	CCWGG	1 cut(s)	547
PvuII	CAGCTG	1 cut(s)	457
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	5 cut(s)	42, 72, 84, 224, 497
SatI	GCNGC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	549
SfaNI	GCATC	2 cut(s)	358, 698
SfcI	CTRYAG	1 cut(s)	585
SfuI	TTCGAA	1 cut(s)	179
SmiI	ATTTAAAT	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	3 cut(s)	71, 113, 143
SmoI	CTYRAG	3 cut(s)	71, 113, 143
SpeI	ACTAGT	1 cut(s)	665
SsiI	CCGC	1 cut(s)	657
SspMI	CTAG	2 cut(s)	666, 693
StyD4I	CCNGG	1 cut(s)	547
SwaI	ATTTAAAT	1 cut(s)	498
TaaI	ACNGT	3 cut(s)	298, 397, 604
TaqI	TCGA	1 cut(s)	179
TatI	WGTACW	1 cut(s)	380
TfiI	GAWTC	3 cut(s)	118, 277, 424
Tru1I	TTAA	5 cut(s)	42, 72, 84, 224, 497
Tru9I	TTAA	5 cut(s)	42, 72, 84, 224, 497
TseFI	GTSAC	1 cut(s)	402
TseI	GCWGC	1 cut(s)	129
Tsp45I	GTSAC	1 cut(s)	402
TspDTI	ATGAA	6 cut(s)	17, 275, 290, 336, 352, 424
Vha464I	CTTAAG	1 cut(s)	71
XapI	RAATTY	3 cut(s)	358, 558, 619
XbaI	TCTAGA	1 cut(s)	692
XspI	CTAG	2 cut(s)	666, 693
Zsp2I	ATGCAT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.